Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.50700 * 109.47176 * 119.99687 * 2 1 3 5 5 N 1.28640 * 124.71630 * 119.99875 * 4 2 1 6 6 C 1.33562 * 115.76672 * 180.02562 * 5 4 2 7 7 C 1.47263 * 123.14509 * 179.97438 * 6 5 4 8 8 O 1.21637 * 119.99906 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99903 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99933 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47216 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88449 * 57.42439 * 11 10 9 13 13 C 1.54909 * 111.00473 * 293.54822 * 11 10 9 14 14 N 1.47429 * 104.83386 * 204.91177 * 13 11 10 15 15 C 1.36935 * 125.64939 * 204.09328 * 14 13 11 16 16 H 1.07998 * 120.00411 * 6.64363 * 15 14 13 17 17 C 1.38820 * 119.99637 * 186.64933 * 15 14 13 18 18 N 1.31616 * 120.00167 * 7.37467 * 17 15 14 19 19 Si 1.86795 * 119.99594 * 187.37489 * 17 15 14 20 20 H 1.48500 * 109.47142 * 84.98874 * 19 17 15 21 21 H 1.48507 * 109.47095 * 204.98970 * 19 17 15 22 22 H 1.48507 * 109.47311 * 324.98671 * 19 17 15 23 23 C 1.47021 * 108.69986 * 24.35900 * 14 13 11 24 24 C 1.54341 * 107.26762 * 358.58344 * 23 14 13 25 25 H 1.08999 * 110.51515 * 96.44938 * 24 23 14 26 26 O 1.42902 * 111.00225 * 219.60453 * 24 23 14 27 27 C 1.35208 * 113.71387 * 0.24976 * 6 5 4 28 28 S 1.70763 * 124.71971 * 300.00466 * 4 2 1 29 29 H 1.08998 * 109.47486 * 300.00160 * 1 2 3 30 30 H 1.09000 * 109.47086 * 60.00218 * 1 2 3 31 31 H 1.08994 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47066 * 240.00148 * 2 1 3 33 33 H 1.08998 * 109.47074 * 59.99587 * 3 2 1 34 34 H 1.08992 * 109.47284 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46911 * 300.00220 * 3 2 1 36 36 H 0.96997 * 120.00259 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.46949 * 60.00089 * 10 9 7 38 38 H 1.08994 * 109.47179 * 300.00194 * 10 9 7 39 39 H 1.09004 * 110.36663 * 86.07861 * 13 11 10 40 40 H 1.08994 * 110.36964 * 323.75711 * 13 11 10 41 41 H 0.97001 * 119.99943 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.88690 * 118.12828 * 23 14 13 43 43 H 1.09001 * 109.88415 * 239.29600 * 23 14 13 44 44 H 0.96700 * 113.99554 * 293.77900 * 26 24 23 45 45 H 1.08006 * 125.58309 * 179.75640 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7750 -1.7606 1.2182 6 6 3.1165 -2.2443 2.4155 7 6 3.9601 -3.4385 2.5907 8 8 4.2357 -3.8298 3.7090 9 7 4.4269 -4.0980 1.5119 10 6 5.2667 -5.2857 1.6862 11 6 5.6580 -5.8394 0.3147 12 1 6.1743 -5.0832 -0.2767 13 6 4.4185 -6.3828 -0.4390 14 7 4.9567 -7.3834 -1.3785 15 6 4.3592 -7.7880 -2.5423 16 1 3.4672 -7.2902 -2.8928 17 6 4.9000 -8.8382 -3.2715 18 7 5.8978 -9.5387 -2.7754 19 14 4.2116 -9.2570 -4.9567 20 1 4.8576 -8.3993 -5.9824 21 1 4.4843 -10.6846 -5.2620 22 1 2.7455 -9.0204 -4.9654 23 6 6.2381 -7.8795 -0.8557 24 6 6.5218 -7.1203 0.4578 25 1 6.1992 -7.7090 1.3166 26 8 7.9069 -6.7864 0.5674 27 6 2.6102 -1.5384 3.4516 28 16 1.6948 -0.2331 2.8350 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.2069 -3.7862 0.6202 37 1 4.7128 -6.0443 2.2393 38 1 6.1661 -5.0167 2.2400 39 1 3.9232 -5.5789 -0.9838 40 1 3.7255 -6.8521 0.2592 41 1 6.2759 -10.2723 -3.2851 42 1 6.1694 -8.9496 -0.6601 43 1 7.0332 -7.6823 -1.5748 44 1 8.4900 -7.5523 0.6591 45 1 2.7616 -1.7614 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958480782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -28.007618 kcal Electronic energy + Delta-G solvation = -26838.650445 eV Core-core repulsion = 22983.279029 eV Total energy + Delta-G solvation = -3855.371416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.65703 -39.03226 -38.09491 -35.86797 -35.16724 -34.62085 -32.20221 -30.41110 -29.73159 -27.66200 -27.63415 -26.34344 -25.23478 -23.86087 -22.58546 -20.99134 -20.44751 -20.09609 -19.62031 -18.49945 -17.03176 -16.92063 -16.42402 -16.05113 -15.69363 -15.48561 -15.06583 -14.65641 -14.64271 -14.18517 -14.00892 -13.69619 -13.45377 -13.35993 -13.00463 -12.66217 -12.61782 -12.44037 -12.27715 -12.10159 -11.96290 -11.65651 -11.53976 -11.38044 -11.20423 -10.97747 -10.82082 -10.57526 -10.25345 -10.09004 -10.04646 -9.92102 -9.81997 -9.73700 -9.23641 -9.20902 -8.87407 -8.65958 -6.88175 -5.74578 -3.10691 0.27356 0.94117 1.34852 1.80473 3.22153 3.31079 3.38915 3.43617 3.45327 3.63941 4.37498 4.44762 4.56331 4.63764 4.73929 4.89883 4.98565 5.04334 5.09996 5.14632 5.24487 5.34940 5.38429 5.42383 5.51981 5.53645 5.66720 5.70529 5.76638 5.78085 5.87326 6.02779 6.05414 6.23337 6.37269 6.46878 6.57684 6.84628 7.15638 7.36284 7.51941 7.62086 7.73632 8.18297 8.20300 8.20796 9.15738 9.76999 10.41842 11.35802 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.002706 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.638169 B =10343.370802 C =12134.759947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 C -0.148 4.148 4 C 0.036 3.964 5 N -0.441 5.441 6 C 0.014 3.986 7 C 0.591 3.409 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.133 3.867 11 C -0.107 4.107 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.148 3.852 24 C 0.084 3.916 25 H 0.058 0.942 26 O -0.567 6.567 27 C -0.229 4.229 28 S 0.204 5.796 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.023 0.977 41 H 0.253 0.747 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.376 0.624 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 21.266 10.389 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 C -0.206 4.206 4 C -0.244 4.244 5 N -0.156 5.156 6 C -0.120 4.120 7 C 0.374 3.626 8 O -0.418 6.418 9 N -0.354 5.354 10 C 0.009 3.991 11 C -0.127 4.127 12 H 0.108 0.892 13 C 0.015 3.985 14 N -0.328 5.328 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.022 3.978 24 C 0.024 3.976 25 H 0.076 0.924 26 O -0.372 6.372 27 C -0.371 4.371 28 S 0.462 5.538 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.223 0.777 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.564 21.938 10.897 25.949 hybrid contribution 0.428 -1.662 -1.131 2.055 sum -8.136 20.276 9.766 23.931 Atomic orbital electron populations 1.21944 0.92989 1.02993 1.02756 1.19871 0.96214 0.95445 0.92849 1.21942 1.01965 0.93960 1.02769 1.27208 1.00549 0.96882 0.99780 1.66944 1.12361 1.10230 1.26029 1.20462 1.04087 1.00168 0.87326 1.17045 0.79213 0.81522 0.84828 1.90809 1.59297 1.67509 1.24204 1.45865 1.51039 1.29017 1.09437 1.21436 0.94149 0.86093 0.97405 1.22597 0.97728 0.97531 0.94865 0.89210 1.21603 0.92827 0.92270 0.91831 1.44307 1.20679 1.45446 1.22323 1.19059 1.08283 1.12133 0.96353 0.90302 1.24822 0.98811 0.97475 0.99305 1.69928 1.27589 1.22100 1.37202 0.86114 0.78305 0.77290 0.83907 1.21498 1.21687 1.20667 1.21871 0.88654 0.97080 0.90171 1.23117 0.80618 0.94831 0.99017 0.92424 1.86423 1.17328 1.36777 1.96640 1.26609 1.03996 1.00500 1.05989 1.82716 1.45536 1.25389 1.00183 0.92257 0.90931 0.91752 0.87621 0.92257 0.91846 0.90937 0.75269 0.91162 0.90969 0.93816 0.95934 0.93685 0.91928 0.94035 0.77730 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.09 37.16 0.34 -0.51 16 2 C -0.02 -0.16 3.34 -91.77 -0.31 -0.46 16 3 C -0.15 -0.80 9.09 37.16 0.34 -0.47 16 4 C 0.04 0.35 6.00 -13.61 -0.08 0.26 16 5 N -0.44 -5.54 10.12 -8.51 -0.09 -5.63 16 6 C 0.01 0.19 6.70 -84.53 -0.57 -0.37 16 7 C 0.59 9.32 7.80 -12.59 -0.10 9.22 16 8 O -0.54 -9.80 16.71 5.24 0.09 -9.71 16 9 N -0.70 -10.73 5.40 -61.43 -0.33 -11.06 16 10 C 0.13 2.13 5.12 -4.04 -0.02 2.11 16 11 C -0.11 -1.94 2.83 -88.47 -0.25 -2.19 16 12 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 13 C 0.14 2.91 6.41 -2.53 -0.02 2.90 16 14 N -0.60 -15.35 3.39 -170.06 -0.58 -15.93 16 15 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 16 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 17 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 18 N -0.92 -26.92 10.48 55.49 0.58 -26.34 16 19 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.15 3.56 5.21 -3.06 -0.02 3.54 16 24 C 0.08 1.61 3.78 -24.89 -0.09 1.51 16 25 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 26 O -0.57 -10.00 13.40 -35.23 -0.47 -10.47 16 27 C -0.23 -2.47 10.62 29.65 0.31 -2.16 16 28 S 0.20 1.59 22.22 -107.50 -2.39 -0.80 16 29 H 0.06 0.28 7.91 -51.93 -0.41 -0.13 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.41 6.00 7.86 -40.82 -0.32 5.68 16 37 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.06 1.66 6.99 -51.93 -0.36 1.30 16 43 H 0.04 1.11 7.83 -51.93 -0.41 0.70 16 44 H 0.38 5.13 9.12 45.56 0.42 5.55 16 45 H 0.19 1.83 8.03 -52.48 -0.42 1.41 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -33.83 385.39 -9.21 -43.04 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.10 Total: 7.53 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.71 Total: 6.50 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.41 Total: -58.95 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.38 Total: -20.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.39 Total: -0.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.83 -9.21 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958480782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.035 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds