Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.50700 * 109.47176 * 119.99687 * 2 1 3 5 5 N 1.28640 * 124.71630 * 119.99875 * 4 2 1 6 6 C 1.33562 * 115.76672 * 180.02562 * 5 4 2 7 7 C 1.47263 * 123.14509 * 179.97438 * 6 5 4 8 8 O 1.21637 * 119.99906 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99903 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99933 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47216 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88449 * 57.42439 * 11 10 9 13 13 C 1.54909 * 111.00473 * 293.54822 * 11 10 9 14 14 N 1.47429 * 104.83386 * 204.91177 * 13 11 10 15 15 C 1.36935 * 125.64939 * 204.09328 * 14 13 11 16 16 H 1.07998 * 120.00411 * 6.64363 * 15 14 13 17 17 C 1.38820 * 119.99637 * 186.64933 * 15 14 13 18 18 N 1.31616 * 120.00167 * 7.37467 * 17 15 14 19 19 Si 1.86795 * 119.99594 * 187.37489 * 17 15 14 20 20 H 1.48500 * 109.47142 * 84.98874 * 19 17 15 21 21 H 1.48507 * 109.47095 * 204.98970 * 19 17 15 22 22 H 1.48507 * 109.47311 * 324.98671 * 19 17 15 23 23 C 1.47021 * 108.69986 * 24.35900 * 14 13 11 24 24 C 1.54341 * 107.26762 * 358.58344 * 23 14 13 25 25 H 1.08999 * 110.51515 * 96.44938 * 24 23 14 26 26 O 1.42902 * 111.00225 * 219.60453 * 24 23 14 27 27 C 1.35208 * 113.71387 * 0.24976 * 6 5 4 28 28 S 1.70763 * 124.71971 * 300.00466 * 4 2 1 29 29 H 1.08998 * 109.47486 * 300.00160 * 1 2 3 30 30 H 1.09000 * 109.47086 * 60.00218 * 1 2 3 31 31 H 1.08994 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47066 * 240.00148 * 2 1 3 33 33 H 1.08998 * 109.47074 * 59.99587 * 3 2 1 34 34 H 1.08992 * 109.47284 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46911 * 300.00220 * 3 2 1 36 36 H 0.96997 * 120.00259 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.46949 * 60.00089 * 10 9 7 38 38 H 1.08994 * 109.47179 * 300.00194 * 10 9 7 39 39 H 1.09004 * 110.36663 * 86.07861 * 13 11 10 40 40 H 1.08994 * 110.36964 * 323.75711 * 13 11 10 41 41 H 0.97001 * 119.99943 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.88690 * 118.12828 * 23 14 13 43 43 H 1.09001 * 109.88415 * 239.29600 * 23 14 13 44 44 H 0.96700 * 113.99554 * 293.77900 * 26 24 23 45 45 H 1.08006 * 125.58309 * 179.75640 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7750 -1.7606 1.2182 6 6 3.1165 -2.2443 2.4155 7 6 3.9601 -3.4385 2.5907 8 8 4.2357 -3.8298 3.7090 9 7 4.4269 -4.0980 1.5119 10 6 5.2667 -5.2857 1.6862 11 6 5.6580 -5.8394 0.3147 12 1 6.1743 -5.0832 -0.2767 13 6 4.4185 -6.3828 -0.4390 14 7 4.9567 -7.3834 -1.3785 15 6 4.3592 -7.7880 -2.5423 16 1 3.4672 -7.2902 -2.8928 17 6 4.9000 -8.8382 -3.2715 18 7 5.8978 -9.5387 -2.7754 19 14 4.2116 -9.2570 -4.9567 20 1 4.8576 -8.3993 -5.9824 21 1 4.4843 -10.6846 -5.2620 22 1 2.7455 -9.0204 -4.9654 23 6 6.2381 -7.8795 -0.8557 24 6 6.5218 -7.1203 0.4578 25 1 6.1992 -7.7090 1.3166 26 8 7.9069 -6.7864 0.5674 27 6 2.6102 -1.5384 3.4516 28 16 1.6948 -0.2331 2.8350 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.2069 -3.7862 0.6202 37 1 4.7128 -6.0443 2.2393 38 1 6.1661 -5.0167 2.2400 39 1 3.9232 -5.5789 -0.9838 40 1 3.7255 -6.8521 0.2592 41 1 6.2759 -10.2723 -3.2851 42 1 6.1694 -8.9496 -0.6601 43 1 7.0332 -7.6823 -1.5748 44 1 8.4900 -7.5523 0.6591 45 1 2.7616 -1.7614 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958480782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -53.784989 kcal Electronic energy + Delta-G solvation = -26839.768236 eV Core-core repulsion = 22983.279029 eV Total energy + Delta-G solvation = -3856.489207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.63705 -40.28227 -39.54267 -36.69178 -36.45059 -36.16486 -34.04649 -31.65346 -31.04140 -29.40650 -28.04874 -27.69994 -26.63832 -25.21098 -23.73920 -22.27263 -21.69145 -21.48119 -20.80283 -19.47352 -18.85137 -18.36846 -17.64457 -17.04615 -16.99081 -16.70251 -16.42212 -15.98195 -15.71879 -15.48520 -15.18507 -14.93201 -14.66954 -14.46401 -14.24712 -14.02821 -13.83270 -13.62254 -13.33883 -13.10334 -13.06786 -13.01967 -12.74962 -12.63096 -12.50789 -12.31306 -12.14361 -11.95720 -11.88871 -11.80989 -11.58372 -11.26883 -10.90027 -10.84034 -10.73584 -10.67849 -10.28742 -9.83503 -8.95617 -7.87675 -5.26627 -0.53646 0.22773 0.57436 0.85717 1.45175 1.47846 1.55627 2.08362 2.23462 2.46624 2.85395 3.21294 3.30458 3.51841 3.60156 3.70425 3.85069 3.99598 4.09884 4.10332 4.16293 4.18997 4.35435 4.40233 4.47863 4.56818 4.66909 4.78037 4.79760 4.84363 4.90609 4.91772 4.95585 5.16307 5.19625 5.30126 5.32681 5.36059 5.37666 5.47138 5.65829 6.14437 6.23042 6.55104 6.86523 7.01592 7.04154 7.70669 8.34840 9.21016 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.002706 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.638169 B =10343.370802 C =12134.759947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.020 3.980 5 N -0.471 5.471 6 C -0.015 4.015 7 C 0.589 3.411 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.146 3.854 11 C -0.090 4.090 12 H 0.085 0.915 13 C 0.141 3.859 14 N -0.622 5.622 15 C -0.247 4.247 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.268 1.268 23 C 0.157 3.843 24 C 0.100 3.900 25 H 0.077 0.923 26 O -0.569 6.569 27 C -0.239 4.239 28 S 0.297 5.703 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.248 0.752 42 H 0.032 0.968 43 H 0.006 0.994 44 H 0.394 0.606 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 23.736 10.893 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.259 4.259 5 N -0.186 5.186 6 C -0.150 4.150 7 C 0.374 3.626 8 O -0.451 6.451 9 N -0.352 5.352 10 C 0.022 3.978 11 C -0.109 4.109 12 H 0.103 0.897 13 C 0.016 3.984 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.102 0.898 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.192 1.192 23 C 0.031 3.969 24 C 0.039 3.961 25 H 0.095 0.905 26 O -0.376 6.376 27 C -0.382 4.382 28 S 0.555 5.445 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.244 0.756 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.195 24.446 11.405 28.838 hybrid contribution 0.880 -2.329 -1.254 2.788 sum -9.316 22.117 10.151 26.057 Atomic orbital electron populations 1.21954 0.91685 1.02592 1.04221 1.20006 0.97178 0.96040 0.91366 1.21948 1.01324 0.92866 1.04214 1.27730 0.99785 0.96357 1.02036 1.66917 1.13876 1.11744 1.26073 1.20200 1.05767 1.00476 0.88594 1.17398 0.78959 0.81995 0.84229 1.90776 1.60622 1.68610 1.25114 1.45808 1.50908 1.28733 1.09725 1.21207 0.94440 0.86440 0.95716 1.22391 0.96114 0.96847 0.95587 0.89710 1.21719 0.93932 0.91445 0.91335 1.44606 1.21292 1.46379 1.22673 1.19464 1.08522 1.12125 0.97426 0.89791 1.25689 0.99474 0.97681 1.02947 1.70140 1.28850 1.22440 1.38313 0.85072 0.78262 0.76522 0.79336 1.21208 1.22022 1.19239 1.21659 0.87342 0.96179 0.91742 1.22859 0.81717 0.94767 0.96728 0.90511 1.86392 1.16767 1.38052 1.96379 1.26922 1.03733 1.01354 1.06145 1.82350 1.42632 1.22211 0.97279 0.90965 0.89349 0.93063 0.88890 0.90997 0.92878 0.89354 0.74910 0.91199 0.90701 0.93031 0.95569 0.94272 0.94983 0.97612 0.75630 0.78694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.09 71.98 0.65 -0.67 16 2 C -0.02 -0.30 3.34 -11.54 -0.04 -0.34 16 3 C -0.15 -1.23 9.09 71.98 0.65 -0.57 16 4 C 0.02 0.36 6.00 88.58 0.53 0.89 16 5 N -0.47 -11.57 10.12 -180.84 -1.83 -13.40 16 6 C -0.02 -0.41 6.70 40.56 0.27 -0.13 16 7 C 0.59 18.55 7.80 86.62 0.68 19.22 16 8 O -0.57 -20.70 16.71 -4.15 -0.07 -20.77 16 9 N -0.70 -21.24 5.40 -466.52 -2.52 -23.76 16 10 C 0.15 4.59 5.12 86.38 0.44 5.03 16 11 C -0.09 -3.20 2.83 -9.40 -0.03 -3.23 16 12 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 13 C 0.14 5.81 6.41 86.85 0.56 6.37 16 14 N -0.62 -32.39 3.39 -691.94 -2.35 -34.74 16 15 C -0.25 -13.95 10.26 84.04 0.86 -13.09 16 16 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 17 C -0.06 -3.70 5.45 84.86 0.46 -3.24 16 18 N -0.95 -57.12 10.48 21.65 0.23 -56.90 16 19 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.16 7.77 5.21 86.74 0.45 8.22 16 24 C 0.10 3.77 3.78 31.79 0.12 3.89 16 25 H 0.08 2.66 8.04 -2.39 -0.02 2.64 16 26 O -0.57 -19.58 13.40 -148.98 -2.00 -21.58 16 27 C -0.24 -4.82 10.62 67.12 0.71 -4.11 16 28 S 0.30 3.80 22.22 -56.49 -1.26 2.55 16 29 H 0.07 0.45 7.91 -2.39 -0.02 0.43 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 0.42 7.91 -2.39 -0.02 0.40 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.48 8.14 -2.38 -0.02 0.47 16 36 H 0.41 12.05 7.86 -92.71 -0.73 11.33 16 37 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.03 1.77 6.99 -2.39 -0.02 1.75 16 43 H 0.01 0.32 7.83 -2.39 -0.02 0.30 16 44 H 0.39 10.41 9.12 -74.06 -0.68 9.73 16 45 H 0.20 3.54 8.03 -2.91 -0.02 3.51 16 Total: -1.00 -74.64 385.39 -1.82 -76.47 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.39 Total: 25.96 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.33 Total: 18.26 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -6.47 Total: -128.80 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.07 Total: -42.35 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.26 Total: 2.55 kcal Total: -74.64 -1.82 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958480782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.682 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds