Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46825 * 2 1 4 4 C 1.50695 * 109.47340 * 240.00188 * 2 1 3 5 5 N 1.30946 * 122.90372 * 53.14564 * 4 2 1 6 6 C 1.29440 * 117.36242 * 179.75298 * 5 4 2 7 7 S 1.70955 * 110.38874 * 0.49416 * 6 5 4 8 8 C 1.35665 * 122.90616 * 233.43431 * 4 2 1 9 9 C 1.46683 * 126.12668 * 0.02651 * 8 4 2 10 10 O 1.21687 * 120.00162 * 5.46278 * 9 8 4 11 11 N 1.34772 * 119.99992 * 185.46345 * 9 8 4 12 12 C 1.46496 * 120.00355 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47545 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.51169 * 304.99513 * 13 12 11 15 15 C 1.53301 * 109.51347 * 184.89697 * 13 12 11 16 16 N 1.47153 * 108.38213 * 187.77181 * 15 13 12 17 17 C 1.36943 * 120.97899 * 230.55687 * 16 15 13 18 18 H 1.07997 * 119.99956 * 27.04695 * 17 16 15 19 19 C 1.38809 * 119.99616 * 207.04361 * 17 16 15 20 20 N 1.31624 * 120.00303 * 17.88104 * 19 17 16 21 21 Si 1.86796 * 119.99782 * 197.87734 * 19 17 16 22 22 H 1.48502 * 109.47542 * 94.98595 * 21 19 17 23 23 H 1.48501 * 109.47378 * 214.98254 * 21 19 17 24 24 H 1.48501 * 109.47395 * 334.98428 * 21 19 17 25 25 C 1.47142 * 118.03598 * 50.53436 * 16 15 13 26 26 C 1.53293 * 108.38910 * 309.46264 * 25 16 15 27 27 O 1.42958 * 109.26103 * 52.27839 * 26 25 16 28 28 H 1.09002 * 109.47157 * 60.00562 * 1 2 3 29 29 H 1.08993 * 109.47513 * 299.99826 * 1 2 3 30 30 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47269 * 119.99533 * 2 1 3 32 32 H 1.08999 * 109.47281 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46950 * 300.00171 * 3 2 1 34 34 H 1.09001 * 109.46991 * 59.99488 * 3 2 1 35 35 H 1.07990 * 124.80272 * 180.23244 * 6 5 4 36 36 H 0.97005 * 120.00117 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.47044 * 300.00000 * 12 11 9 38 38 H 1.09005 * 109.47328 * 59.99736 * 12 11 9 39 39 H 1.08995 * 109.68261 * 307.49699 * 15 13 12 40 40 H 1.08998 * 109.67796 * 68.04789 * 15 13 12 41 41 H 0.96996 * 120.00258 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.68102 * 69.19048 * 25 16 15 43 43 H 1.08998 * 109.68322 * 189.69823 * 25 16 15 44 44 H 1.09005 * 109.51511 * 172.22406 * 26 25 16 45 45 H 1.08999 * 109.51316 * 292.33179 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.6478 -0.3937 -2.4414 6 6 2.1518 -1.0719 -3.4221 7 16 3.2259 -2.2637 -2.8320 8 6 2.9178 -1.7369 -1.1789 9 6 3.5117 -2.3066 0.0353 10 8 3.1445 -1.9227 1.1301 11 7 4.4642 -3.2552 -0.0616 12 6 5.0570 -3.8246 1.1510 13 6 6.1039 -4.8710 0.7641 14 1 5.6495 -5.6167 0.1116 15 6 6.6370 -5.5541 2.0288 16 7 7.7679 -6.4157 1.6493 17 6 7.8212 -7.7250 2.0472 18 1 6.9082 -8.2662 2.2468 19 6 9.0486 -8.3563 2.1939 20 7 10.1483 -7.6408 2.3002 21 14 9.1398 -10.2214 2.2406 22 1 9.4365 -10.7368 0.8798 23 1 10.2157 -10.6413 3.1742 24 1 7.8400 -10.7692 2.7048 25 6 8.8396 -5.8290 0.8292 26 6 8.1993 -5.1326 -0.3770 27 8 7.1859 -4.2341 0.0804 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.9226 -0.9106 -4.4650 36 1 4.7567 -3.5615 -0.9343 37 1 5.5323 -3.0324 1.7296 38 1 4.2773 -4.2946 1.7505 39 1 6.9728 -4.7994 2.7398 40 1 5.8497 -6.1587 2.4789 41 1 11.0060 -8.0819 2.4024 42 1 9.3973 -5.1019 1.4196 43 1 9.5114 -6.6156 0.4857 44 1 8.9610 -4.5751 -0.9222 45 1 7.7541 -5.8793 -1.0344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035536461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -16.929227 kcal Electronic energy + Delta-G solvation = -27113.781027 eV Core-core repulsion = 23258.890007 eV Total energy + Delta-G solvation = -3854.891021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75204 -39.38550 -38.42116 -35.27787 -34.78880 -34.33625 -31.80979 -31.05855 -30.19723 -27.64374 -27.26111 -26.34239 -25.26819 -23.26949 -22.70274 -21.99294 -21.38280 -20.05040 -19.37243 -18.10736 -17.26386 -16.81835 -16.15287 -16.11649 -15.46799 -15.26307 -15.02082 -14.59716 -14.49097 -14.39442 -14.33358 -13.94362 -13.77940 -13.29689 -13.14237 -13.04294 -12.79929 -12.60941 -12.45162 -12.26103 -11.64760 -11.31857 -11.28794 -11.18391 -11.08457 -10.89981 -10.78247 -10.47266 -10.30232 -10.23033 -10.04556 -9.84646 -9.79297 -9.67672 -9.23797 -9.13606 -9.05892 -8.59356 -6.80982 -5.89881 -3.33922 -0.02862 0.89860 1.27457 2.20435 2.96570 3.04375 3.30769 3.38334 3.39805 3.83550 4.15083 4.38354 4.55059 4.67471 4.74794 5.04078 5.05418 5.11025 5.26678 5.27917 5.40202 5.44839 5.53450 5.66349 5.71838 5.72260 5.75775 5.81672 5.94386 5.96418 6.07293 6.10315 6.17546 6.28324 6.31000 6.41809 6.44993 6.69249 7.02499 7.24887 7.38490 7.44278 7.66545 7.77751 8.01762 8.27983 9.05694 9.68397 10.25532 11.18434 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002314 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.896541 B =12095.712140 C =12513.541264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.137 4.137 4 C 0.153 3.847 5 N -0.469 5.469 6 C 0.032 3.968 7 S 0.163 5.837 8 C -0.291 4.291 9 C 0.596 3.404 10 O -0.524 6.524 11 N -0.712 5.712 12 C 0.130 3.870 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.593 5.593 17 C -0.258 4.258 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.140 3.860 26 C 0.040 3.960 27 O -0.390 6.390 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.401 0.599 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 13.416 -11.825 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.194 4.194 4 C 0.015 3.985 5 N -0.182 5.182 6 C -0.263 4.263 7 S 0.418 5.582 8 C -0.415 4.415 9 C 0.381 3.619 10 O -0.403 6.403 11 N -0.362 5.362 12 C 0.007 3.993 13 C 0.004 3.996 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.317 5.317 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.309 6.309 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.071 13.407 -11.693 23.315 hybrid contribution 0.151 -1.025 0.031 1.036 sum -14.919 12.383 -11.662 22.626 Atomic orbital electron populations 1.21729 0.93768 1.01788 1.02102 1.20429 0.96408 0.96258 0.94057 1.21737 1.00994 0.94626 1.02077 1.20710 0.92108 0.92375 0.93319 1.66057 1.25592 1.27923 0.98629 1.28733 0.97950 0.96019 1.03605 1.84075 1.42012 1.34192 0.97936 1.25552 1.10957 1.07432 0.97515 1.16653 0.79261 0.79219 0.86799 1.90709 1.61905 1.60729 1.26919 1.45874 1.39316 1.40165 1.10861 1.21515 0.94754 0.96748 0.86281 1.22823 0.87106 0.93164 0.96526 0.92299 1.21436 0.92226 0.94051 0.92787 1.44062 1.20908 1.08362 1.58375 1.19201 0.92224 0.85659 1.41631 0.91309 1.25066 0.96122 0.98377 0.99952 1.70051 0.97977 1.34038 1.52375 0.86232 0.77470 0.85303 0.77522 1.21384 1.21658 1.20281 1.21414 0.90718 0.96994 0.89449 1.23326 0.90028 0.92615 0.97834 1.87790 1.33098 1.34778 1.75251 0.92133 0.92038 0.92988 0.85493 0.92849 0.92380 0.91855 0.77817 0.76442 0.90162 0.89649 0.95120 0.91676 0.93462 0.95259 0.89026 0.89973 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.08 37.16 0.34 -0.99 16 2 C -0.05 -0.58 3.15 -91.77 -0.29 -0.87 16 3 C -0.14 -1.37 9.18 37.16 0.34 -1.03 16 4 C 0.15 1.81 5.40 -83.89 -0.45 1.36 16 5 N -0.47 -5.00 10.26 -11.53 -0.12 -5.11 16 6 C 0.03 0.25 12.22 51.75 0.63 0.89 16 7 S 0.16 1.37 22.37 -107.50 -2.40 -1.03 16 8 C -0.29 -3.47 6.48 -37.09 -0.24 -3.71 16 9 C 0.60 8.28 7.77 -12.85 -0.10 8.18 16 10 O -0.52 -8.46 14.02 5.20 0.07 -8.39 16 11 N -0.71 -9.39 5.50 -61.62 -0.34 -9.73 16 12 C 0.13 1.89 5.34 -4.04 -0.02 1.87 16 13 C 0.06 1.07 2.81 -26.58 -0.07 0.99 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.12 2.47 6.02 -3.53 -0.02 2.45 16 16 N -0.59 -14.48 3.04 -171.83 -0.52 -15.00 16 17 C -0.26 -6.87 9.63 -15.06 -0.15 -7.01 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 19 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 20 N -0.90 -25.55 11.27 55.49 0.63 -24.92 16 21 Si 0.91 21.09 29.59 -169.99 -5.03 16.06 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.14 3.24 5.44 -3.54 -0.02 3.22 16 26 C 0.04 0.73 6.98 37.31 0.26 1.00 16 27 O -0.39 -7.05 10.33 -35.23 -0.36 -7.41 16 28 H 0.06 0.58 8.05 -51.93 -0.42 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.13 1.69 4.96 -51.93 -0.26 1.43 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.40 4.77 7.67 -40.82 -0.31 4.45 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 2.33 6.24 -51.93 -0.32 2.00 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -31.32 378.98 -9.02 -40.33 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.77 Total: 3.14 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 0.12 Total: 6.35 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.36 Total: -54.77 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.29 Total: -15.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.40 Total: -1.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.32 -9.02 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035536461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.406 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds