Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46825 * 2 1 4 4 C 1.50695 * 109.47340 * 240.00188 * 2 1 3 5 5 N 1.30946 * 122.90372 * 53.14564 * 4 2 1 6 6 C 1.29440 * 117.36242 * 179.75298 * 5 4 2 7 7 S 1.70955 * 110.38874 * 0.49416 * 6 5 4 8 8 C 1.35665 * 122.90616 * 233.43431 * 4 2 1 9 9 C 1.46683 * 126.12668 * 0.02651 * 8 4 2 10 10 O 1.21687 * 120.00162 * 5.46278 * 9 8 4 11 11 N 1.34772 * 119.99992 * 185.46345 * 9 8 4 12 12 C 1.46496 * 120.00355 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47545 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.51169 * 304.99513 * 13 12 11 15 15 C 1.53301 * 109.51347 * 184.89697 * 13 12 11 16 16 N 1.47153 * 108.38213 * 187.77181 * 15 13 12 17 17 C 1.36943 * 120.97899 * 230.55687 * 16 15 13 18 18 H 1.07997 * 119.99956 * 27.04695 * 17 16 15 19 19 C 1.38809 * 119.99616 * 207.04361 * 17 16 15 20 20 N 1.31624 * 120.00303 * 17.88104 * 19 17 16 21 21 Si 1.86796 * 119.99782 * 197.87734 * 19 17 16 22 22 H 1.48502 * 109.47542 * 94.98595 * 21 19 17 23 23 H 1.48501 * 109.47378 * 214.98254 * 21 19 17 24 24 H 1.48501 * 109.47395 * 334.98428 * 21 19 17 25 25 C 1.47142 * 118.03598 * 50.53436 * 16 15 13 26 26 C 1.53293 * 108.38910 * 309.46264 * 25 16 15 27 27 O 1.42958 * 109.26103 * 52.27839 * 26 25 16 28 28 H 1.09002 * 109.47157 * 60.00562 * 1 2 3 29 29 H 1.08993 * 109.47513 * 299.99826 * 1 2 3 30 30 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47269 * 119.99533 * 2 1 3 32 32 H 1.08999 * 109.47281 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46950 * 300.00171 * 3 2 1 34 34 H 1.09001 * 109.46991 * 59.99488 * 3 2 1 35 35 H 1.07990 * 124.80272 * 180.23244 * 6 5 4 36 36 H 0.97005 * 120.00117 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.47044 * 300.00000 * 12 11 9 38 38 H 1.09005 * 109.47328 * 59.99736 * 12 11 9 39 39 H 1.08995 * 109.68261 * 307.49699 * 15 13 12 40 40 H 1.08998 * 109.67796 * 68.04789 * 15 13 12 41 41 H 0.96996 * 120.00258 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.68102 * 69.19048 * 25 16 15 43 43 H 1.08998 * 109.68322 * 189.69823 * 25 16 15 44 44 H 1.09005 * 109.51511 * 172.22406 * 26 25 16 45 45 H 1.08999 * 109.51316 * 292.33179 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.6478 -0.3937 -2.4414 6 6 2.1518 -1.0719 -3.4221 7 16 3.2259 -2.2637 -2.8320 8 6 2.9178 -1.7369 -1.1789 9 6 3.5117 -2.3066 0.0353 10 8 3.1445 -1.9227 1.1301 11 7 4.4642 -3.2552 -0.0616 12 6 5.0570 -3.8246 1.1510 13 6 6.1039 -4.8710 0.7641 14 1 5.6495 -5.6167 0.1116 15 6 6.6370 -5.5541 2.0288 16 7 7.7679 -6.4157 1.6493 17 6 7.8212 -7.7250 2.0472 18 1 6.9082 -8.2662 2.2468 19 6 9.0486 -8.3563 2.1939 20 7 10.1483 -7.6408 2.3002 21 14 9.1398 -10.2214 2.2406 22 1 9.4365 -10.7368 0.8798 23 1 10.2157 -10.6413 3.1742 24 1 7.8400 -10.7692 2.7048 25 6 8.8396 -5.8290 0.8292 26 6 8.1993 -5.1326 -0.3770 27 8 7.1859 -4.2341 0.0804 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.9226 -0.9106 -4.4650 36 1 4.7567 -3.5615 -0.9343 37 1 5.5323 -3.0324 1.7296 38 1 4.2773 -4.2946 1.7505 39 1 6.9728 -4.7994 2.7398 40 1 5.8497 -6.1587 2.4789 41 1 11.0060 -8.0819 2.4024 42 1 9.3973 -5.1019 1.4196 43 1 9.5114 -6.6156 0.4857 44 1 8.9610 -4.5751 -0.9222 45 1 7.7541 -5.8793 -1.0344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035536461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -38.332832 kcal Electronic energy + Delta-G solvation = -27114.709157 eV Core-core repulsion = 23258.890007 eV Total energy + Delta-G solvation = -3855.819151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62234 -40.53399 -39.79590 -36.58339 -36.02809 -35.60112 -33.43065 -32.63515 -31.26401 -29.24177 -28.04228 -27.56037 -26.45511 -24.99659 -23.85616 -23.11300 -22.41945 -21.56275 -20.47342 -18.91491 -18.88326 -18.04457 -17.51282 -17.15530 -16.92545 -16.46974 -16.19931 -16.10374 -15.58772 -15.48445 -15.35820 -15.19511 -15.03345 -14.80008 -14.59701 -14.45433 -13.81599 -13.73292 -13.37382 -13.21294 -13.03500 -13.00570 -12.71008 -12.55240 -12.22447 -12.12671 -12.12542 -12.08287 -11.89083 -11.87195 -11.34209 -11.06631 -10.82186 -10.66564 -10.63849 -10.54187 -10.23193 -9.86632 -8.76677 -7.92871 -5.40433 -0.78824 0.18486 0.56513 1.38216 1.46565 1.47717 1.57248 1.92721 2.06044 2.47203 2.74671 3.15827 3.22272 3.46416 3.65595 3.87066 3.95354 4.03065 4.04380 4.21871 4.24104 4.32991 4.45929 4.50000 4.53930 4.58958 4.70661 4.73897 4.79311 4.84957 4.88163 4.94496 5.00626 5.04364 5.14627 5.21695 5.24408 5.31482 5.52848 5.53909 5.60309 6.23664 6.27768 6.31765 6.58756 6.98710 7.04880 7.72773 8.26811 9.13443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002314 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.896541 B =12095.712140 C =12513.541264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.151 3.849 5 N -0.492 5.492 6 C 0.049 3.951 7 S 0.206 5.794 8 C -0.329 4.329 9 C 0.595 3.405 10 O -0.554 6.554 11 N -0.707 5.707 12 C 0.141 3.859 13 C 0.078 3.922 14 H 0.071 0.929 15 C 0.117 3.883 16 N -0.612 5.612 17 C -0.267 4.267 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.143 3.857 26 C 0.054 3.946 27 O -0.390 6.390 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.409 0.591 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.252 0.748 42 H -0.001 1.001 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.887 13.509 -14.184 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.188 4.188 4 C 0.012 3.988 5 N -0.206 5.206 6 C -0.246 4.246 7 S 0.463 5.537 8 C -0.453 4.453 9 C 0.382 3.618 10 O -0.435 6.435 11 N -0.358 5.358 12 C 0.017 3.983 13 C 0.018 3.982 14 H 0.089 0.911 15 C -0.009 4.009 16 N -0.337 5.337 17 C -0.397 4.397 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.018 3.982 26 C -0.023 4.023 27 O -0.310 6.310 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.263 0.737 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.706 13.504 -14.085 25.687 hybrid contribution 0.621 -1.006 0.733 1.391 sum -16.085 12.497 -13.352 24.356 Atomic orbital electron populations 1.21668 0.92675 1.01495 1.02807 1.20409 0.97350 0.96627 0.93445 1.21683 1.00157 0.94098 1.02848 1.20816 0.91830 0.92199 0.93981 1.66109 1.26800 1.29125 0.98572 1.29509 0.95941 0.94280 1.04822 1.83888 1.41403 1.33521 0.94934 1.25411 1.12361 1.08726 0.98767 1.16908 0.78874 0.78785 0.87230 1.90696 1.62839 1.61636 1.28379 1.45734 1.39207 1.40152 1.10673 1.21291 0.94328 0.95833 0.86825 1.22663 0.86996 0.93780 0.94721 0.91140 1.21590 0.91278 0.93581 0.94456 1.44342 1.21951 1.08450 1.58942 1.19548 0.92400 0.86913 1.40792 0.90941 1.25840 0.95848 1.02503 1.00262 1.70203 0.98285 1.35589 1.53977 0.85205 0.77435 0.80230 0.77291 1.20937 1.22345 1.19141 1.21287 0.90520 0.95672 0.90741 1.23162 0.90542 0.92969 0.95670 1.87807 1.33182 1.34829 1.75136 0.91830 0.90857 0.93738 0.87707 0.94032 0.91957 0.90674 0.73723 0.75532 0.91346 0.88678 0.96339 0.90796 0.93922 0.98288 0.91678 0.87278 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.08 71.98 0.65 -1.77 16 2 C -0.06 -1.30 3.15 -11.54 -0.04 -1.33 16 3 C -0.13 -2.55 9.18 71.98 0.66 -1.89 16 4 C 0.15 3.43 5.40 42.09 0.23 3.65 16 5 N -0.49 -9.44 10.26 -190.40 -1.95 -11.40 16 6 C 0.05 0.60 12.22 130.60 1.60 2.20 16 7 S 0.21 2.92 22.37 -56.49 -1.26 1.65 16 8 C -0.33 -7.48 6.48 23.88 0.15 -7.33 16 9 C 0.60 16.30 7.77 86.45 0.67 16.97 16 10 O -0.55 -18.21 14.02 -4.31 -0.06 -18.27 16 11 N -0.71 -17.83 5.50 -467.08 -2.57 -20.40 16 12 C 0.14 3.97 5.34 86.38 0.46 4.43 16 13 C 0.08 2.52 2.81 30.69 0.09 2.60 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.12 4.72 6.02 86.36 0.52 5.24 16 16 N -0.61 -30.12 3.04 -697.56 -2.12 -32.24 16 17 C -0.27 -14.26 9.63 84.03 0.81 -13.45 16 18 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 19 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 20 N -0.94 -54.39 11.27 21.65 0.24 -54.14 16 21 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.14 6.76 5.44 86.35 0.47 7.23 16 26 C 0.05 1.93 6.98 72.08 0.50 2.43 16 27 O -0.39 -13.51 10.33 -148.98 -1.54 -15.05 16 28 H 0.06 1.15 8.05 -2.39 -0.02 1.13 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 2.87 4.96 -2.39 -0.01 2.86 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.25 0.72 8.06 -2.92 -0.02 0.70 16 36 H 0.41 8.91 7.67 -92.70 -0.71 8.20 16 37 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.10 2.51 8.14 -2.38 -0.02 2.50 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 2.79 7.96 -2.39 -0.02 2.78 16 41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.06 3.40 6.24 -2.39 -0.01 3.38 16 44 H 0.11 3.30 8.14 -2.38 -0.02 3.29 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.10 378.98 0.25 -68.84 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.29 Total: 18.66 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 7.20 Total: 16.73 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.40 Total: -118.18 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.60 Total: -33.33 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.26 Total: 1.65 kcal Total: -69.10 0.25 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035536461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds