Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 H 1.09006 * 109.52273 * 305.08045 * 3 2 1 5 5 C 1.53190 * 109.49765 * 65.15652 * 3 2 1 6 6 N 1.46920 * 108.77506 * 174.58467 * 5 3 2 7 7 C 1.34781 * 120.63096 * 126.41737 * 6 5 3 8 8 O 1.21637 * 119.99396 * 353.47992 * 7 6 5 9 9 C 1.47113 * 120.00422 * 173.47913 * 7 6 5 10 10 C 1.38038 * 127.75975 * 155.16010 * 9 7 6 11 11 C 1.37562 * 114.24690 * 180.02562 * 10 9 7 12 12 O 1.35976 * 120.82501 * 180.02562 * 11 10 9 13 13 C 1.42897 * 116.99950 * 179.97438 * 12 11 10 14 14 N 1.30357 * 118.35396 * 359.97438 * 11 10 9 15 15 S 1.69681 * 107.63150 * 359.72640 * 14 11 10 16 16 C 1.46921 * 118.74142 * 306.39637 * 6 5 3 17 17 C 1.53189 * 108.77621 * 53.60880 * 16 6 5 18 18 C 1.53035 * 109.49745 * 185.00055 * 3 2 1 19 19 H 1.08997 * 109.44903 * 298.69273 * 18 3 2 20 20 N 1.46497 * 109.46215 * 58.66209 * 18 3 2 21 21 C 1.36941 * 120.00001 * 205.06752 * 20 18 3 22 22 H 1.08003 * 119.99879 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99846 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00410 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99820 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47363 * 59.99670 * 25 23 21 27 27 H 1.48507 * 109.47034 * 299.99691 * 25 23 21 28 28 H 1.48502 * 109.47206 * 180.02562 * 25 23 21 29 29 H 1.09007 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47392 * 299.99831 * 1 2 3 31 31 H 1.08998 * 109.47132 * 60.00103 * 1 2 3 32 32 H 1.09008 * 109.47277 * 239.99800 * 2 1 3 33 33 H 1.08998 * 109.47132 * 119.99897 * 2 1 3 34 34 H 1.09011 * 109.58142 * 54.80291 * 5 3 2 35 35 H 1.08994 * 109.70892 * 294.44978 * 5 3 2 36 36 H 1.08003 * 122.87487 * 0.02562 * 10 9 7 37 37 H 1.08999 * 109.47394 * 300.00406 * 13 12 11 38 38 H 1.08998 * 109.47016 * 60.00519 * 13 12 11 39 39 H 1.09005 * 109.46907 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.58869 * 293.81711 * 16 6 5 41 41 H 1.09007 * 109.58665 * 173.39105 * 16 6 5 42 42 H 1.09005 * 109.50033 * 185.41162 * 17 16 6 43 43 H 1.08998 * 109.52702 * 65.33045 * 17 16 6 44 44 H 0.96993 * 119.99844 * 25.06805 * 20 18 3 45 45 H 0.97003 * 119.99878 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2451 3.4643 1.3506 7 6 1.4858 4.5565 1.5681 8 8 0.2745 4.4554 1.6150 9 6 2.1219 5.8706 1.7486 10 6 1.5722 7.1150 1.5147 11 6 2.4203 8.1657 1.7778 12 8 2.0155 9.4507 1.5940 13 6 2.9624 10.4783 1.8930 14 7 3.6213 7.8990 2.2086 15 16 3.7635 6.2120 2.3228 16 6 3.6952 3.5887 1.1498 17 6 4.0736 2.8881 -0.1588 18 6 3.5652 1.4450 -0.1257 19 1 4.0006 0.9261 0.7282 20 7 3.9541 0.7620 -1.3620 21 6 5.1918 0.1850 -1.4653 22 1 5.8813 0.2339 -0.6354 23 6 5.5605 -0.4617 -2.6368 24 7 4.7205 -0.5208 -3.6483 25 14 7.2485 -1.2493 -2.7774 26 1 7.3972 -2.2916 -1.7302 27 1 8.2955 -0.2120 -2.5955 28 1 7.3951 -1.8699 -4.1186 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9965 1.5376 2.1549 35 1 0.5534 2.2160 1.3610 36 1 0.5628 7.2520 1.1560 37 1 3.2538 10.4100 2.9411 38 1 3.8429 10.3556 1.2624 39 1 2.5126 11.4530 1.7040 40 1 4.2208 3.1189 1.9811 41 1 3.9670 4.6428 1.0918 42 1 5.1578 2.8894 -0.2719 43 1 3.6197 3.4145 -0.9984 44 1 3.3351 0.7184 -2.1074 45 1 3.8438 -0.1121 -3.5752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037842339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -9.917044 kcal Electronic energy + Delta-G solvation = -27571.361789 eV Core-core repulsion = 23716.774839 eV Total energy + Delta-G solvation = -3854.586950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61885 -40.16861 -38.07217 -36.66197 -35.07269 -34.07086 -31.95312 -31.66208 -29.57272 -28.97542 -28.19673 -25.87125 -24.25489 -23.99516 -22.94311 -21.63553 -21.02822 -19.88965 -19.35308 -18.60817 -17.91927 -17.34833 -16.68524 -16.43284 -16.26769 -15.43881 -15.10651 -14.92742 -14.65793 -14.16265 -13.95622 -13.73306 -13.61082 -13.54068 -13.36349 -13.22610 -12.94985 -12.42217 -12.29767 -12.12844 -11.88030 -11.66070 -11.47069 -11.38246 -11.07737 -10.92560 -10.77070 -10.65469 -10.44157 -10.31580 -10.19393 -10.02745 -9.98276 -9.91586 -9.22021 -8.98106 -8.72542 -8.55409 -7.08894 -6.13906 -3.14792 -0.12091 0.83145 1.25565 1.95672 2.45230 2.81062 3.02212 3.48737 3.51503 3.69241 4.10812 4.51863 4.61823 4.79358 4.81348 4.90435 4.94854 5.04465 5.05203 5.15282 5.19597 5.27673 5.37033 5.38826 5.50792 5.52136 5.59374 5.73121 5.80340 5.84422 5.96347 6.00243 6.09285 6.19340 6.20803 6.31397 6.36628 6.50347 6.67031 6.69695 6.77685 6.89471 7.15254 7.75603 7.82263 8.71222 9.17024 10.03577 10.18496 11.34039 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003024 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.118295 B = 9257.868778 C =10696.156623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.071 0.929 5 C 0.121 3.879 6 N -0.594 5.594 7 C 0.592 3.408 8 O -0.521 6.521 9 C -0.180 4.180 10 C -0.131 4.131 11 C 0.306 3.694 12 O -0.297 6.297 13 C 0.037 3.963 14 N -0.527 5.527 15 S 0.310 5.690 16 C 0.094 3.906 17 C -0.148 4.148 18 C 0.189 3.811 19 H 0.051 0.949 20 N -0.730 5.730 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.077 2.923 26 H -0.295 1.295 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.367 0.633 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 15.229 13.639 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.326 5.326 7 C 0.377 3.623 8 O -0.398 6.398 9 C -0.312 4.312 10 C -0.168 4.168 11 C 0.092 3.908 12 O -0.203 6.203 13 C -0.059 4.059 14 N -0.368 5.368 15 S 0.461 5.539 16 C -0.031 4.031 17 C -0.190 4.190 18 C 0.078 3.922 19 H 0.069 0.931 20 N -0.372 5.372 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.241 4.241 24 N -0.587 5.587 25 Si 0.908 3.092 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.211 1.211 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.194 0.806 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.866 14.377 13.465 19.905 hybrid contribution -2.382 1.491 0.244 2.821 sum -5.248 15.868 13.710 21.617 Atomic orbital electron populations 1.21852 0.96580 1.01222 1.01429 1.21436 0.94537 0.95423 1.03465 1.21824 0.97751 0.96427 0.96699 0.91073 1.21867 0.99661 0.80287 0.98259 1.48014 1.08753 1.06625 1.69248 1.16699 0.86148 0.81768 0.77641 1.90834 1.12756 1.85013 1.51241 1.26006 1.00424 0.97652 1.07127 1.20727 1.03154 0.87812 1.05129 1.19860 0.88719 0.87139 0.95032 1.86305 1.40772 1.10778 1.82397 1.22980 0.92759 0.88490 1.01625 1.76376 1.19649 1.11784 1.28942 1.85250 1.09709 0.97252 1.61702 1.22330 0.79159 1.01153 1.00481 1.22671 1.02684 0.99143 0.94456 1.20122 0.90603 0.90319 0.91111 0.93056 1.42404 1.16599 1.65524 1.12654 1.19997 0.92441 1.32158 1.01607 0.91764 1.25721 1.05778 1.00200 0.92387 1.70886 1.08348 1.47426 1.32090 0.83274 0.74213 0.75875 0.75798 1.22278 1.22303 1.21103 0.93013 0.93061 0.92948 0.90124 0.92211 0.90893 0.88619 0.80623 0.92141 0.92034 0.87989 0.90250 0.90524 0.90009 0.92096 0.79917 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.68 37.16 0.36 -1.62 16 2 C -0.11 -1.67 5.31 -26.73 -0.14 -1.81 16 3 C -0.11 -1.64 1.92 -90.50 -0.17 -1.81 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.62 5.33 -3.71 -0.02 1.60 16 6 N -0.59 -7.95 2.97 -174.16 -0.52 -8.47 16 7 C 0.59 8.37 7.65 -12.66 -0.10 8.27 16 8 O -0.52 -8.65 16.45 5.24 0.09 -8.56 16 9 C -0.18 -2.23 6.10 -36.06 -0.22 -2.45 16 10 C -0.13 -1.53 10.18 -39.90 -0.41 -1.93 16 11 C 0.31 3.57 7.36 -18.42 -0.14 3.44 16 12 O -0.30 -3.13 10.51 -19.66 -0.21 -3.34 16 13 C 0.04 0.27 10.43 101.05 1.05 1.33 16 14 N -0.53 -6.32 11.03 29.19 0.32 -6.00 16 15 S 0.31 3.39 20.17 -107.50 -2.17 1.22 16 16 C 0.09 1.18 5.66 -3.71 -0.02 1.16 16 17 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 18 C 0.19 3.38 2.19 -67.89 -0.15 3.23 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.73 -16.76 4.33 -53.39 -0.23 -16.99 16 21 C -0.33 -8.69 9.93 -15.06 -0.15 -8.84 16 22 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 23 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 24 N -0.94 -28.18 13.70 55.49 0.76 -27.42 16 25 Si 1.08 25.05 29.92 -169.99 -5.09 19.97 16 26 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.47 7.22 -51.92 -0.37 1.10 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.10 1.31 5.72 -51.93 -0.30 1.01 16 36 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.89 3.76 -24.80 -0.09 0.80 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.37 8.92 6.35 -40.82 -0.26 8.66 16 45 H 0.26 7.51 6.78 -40.82 -0.28 7.23 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -31.31 373.32 -8.11 -39.42 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.35 Total: 7.80 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.35 Total: -3.26 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.33 Total: -58.88 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.12 Total: -11.89 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.17 Total: 1.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.31 -8.11 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.504 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds