Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 C 1.50696 * 109.47345 * 120.00438 * 2 1 3 5 5 N 1.29434 * 124.80120 * 300.04269 * 4 2 1 6 6 C 1.30944 * 117.36541 * 179.69666 * 5 4 2 7 7 C 1.35662 * 114.18788 * 0.48039 * 6 5 4 8 8 C 1.46680 * 126.13249 * 179.82618 * 7 6 5 9 9 O 1.21686 * 120.00194 * 173.27519 * 8 7 6 10 10 N 1.34784 * 119.99788 * 353.27746 * 8 7 6 11 11 C 1.46500 * 119.99797 * 5.08943 * 10 8 7 12 12 C 1.46501 * 119.99760 * 185.09471 * 10 8 7 13 13 H 1.08994 * 110.89118 * 357.57262 * 12 10 8 14 14 C 1.54909 * 111.00049 * 121.45316 * 12 10 8 15 15 N 1.47428 * 104.83130 * 155.08321 * 14 12 10 16 16 C 1.36930 * 125.65081 * 155.83727 * 15 14 12 17 17 H 1.08003 * 120.00395 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99972 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99802 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46987 * 59.99188 * 20 18 16 22 22 H 1.48498 * 109.47181 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46459 * 299.99485 * 20 18 16 24 24 C 1.47023 * 108.70140 * 335.86896 * 15 14 12 25 25 C 1.54328 * 107.27050 * 1.05625 * 24 15 14 26 26 H 1.08997 * 110.72352 * 263.82563 * 25 24 15 27 27 O 1.42900 * 110.71569 * 140.55627 * 25 24 15 28 28 S 1.70947 * 124.80826 * 119.99922 * 4 2 1 29 29 H 1.09007 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47134 * 299.99541 * 1 2 3 32 32 H 1.09006 * 109.47078 * 240.00435 * 2 1 3 33 33 H 1.09004 * 109.47455 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47464 * 300.00418 * 3 2 1 35 35 H 1.09006 * 109.47160 * 59.99849 * 3 2 1 36 36 H 1.07999 * 122.90987 * 180.30446 * 6 5 4 37 37 H 1.09003 * 109.46987 * 66.49994 * 11 10 8 38 38 H 1.09000 * 109.47415 * 306.49974 * 11 10 8 39 39 H 1.09001 * 109.46652 * 186.49777 * 11 10 8 40 40 H 1.09004 * 110.36508 * 273.91783 * 14 12 10 41 41 H 1.08996 * 110.37248 * 36.13416 * 14 12 10 42 42 H 0.97005 * 119.99790 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.88315 * 120.47790 * 24 15 14 44 44 H 1.09001 * 109.88571 * 241.49191 * 24 15 14 45 45 H 0.96700 * 114.00612 * 66.48463 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7769 -0.3507 2.4472 6 6 2.2848 -1.0793 3.4094 7 6 3.0321 -2.1263 2.9786 8 6 3.7221 -3.1037 3.8273 9 8 4.2622 -4.0716 3.3252 10 7 3.7577 -2.9297 5.1634 11 6 3.0145 -1.8273 5.7785 12 6 4.5398 -3.8430 6.0004 13 1 4.9953 -4.6287 5.3977 14 6 5.6120 -3.0727 6.8108 15 7 5.8764 -3.9201 7.9878 16 6 7.0269 -3.9183 8.7303 17 1 7.8381 -3.2554 8.4677 18 6 7.1511 -4.7693 9.8199 19 7 6.1628 -5.5776 10.1397 20 14 8.7204 -4.7663 10.8333 21 1 8.9362 -3.4141 11.4076 22 1 8.6017 -5.7575 11.9327 23 1 9.8707 -5.1248 9.9652 24 6 4.7004 -4.7681 8.2319 25 6 3.6664 -4.4450 7.1327 26 1 2.9399 -3.7149 7.4892 27 8 3.0126 -5.6354 6.6882 28 16 3.0193 -2.1062 1.2166 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.1249 -0.8637 4.4555 37 1 1.9448 -1.9963 5.6543 38 1 3.2922 -0.8891 5.2982 39 1 3.2533 -1.7763 6.8408 40 1 6.5195 -2.9510 6.2194 41 1 5.2282 -2.1005 7.1198 42 1 6.2494 -6.1720 10.9014 43 1 4.9835 -5.8193 8.1772 44 1 4.2818 -4.5477 9.2139 45 1 2.4539 -6.0512 7.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047659163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -12.828407 kcal Electronic energy + Delta-G solvation = -27417.145692 eV Core-core repulsion = 23562.432496 eV Total energy + Delta-G solvation = -3854.713196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75600 -40.61290 -39.38144 -36.82989 -36.66438 -36.17681 -33.94968 -31.68271 -30.01100 -28.98540 -28.47613 -28.02371 -26.90540 -26.17834 -23.57018 -22.79690 -22.28901 -21.06267 -20.27662 -19.14562 -19.02736 -18.36973 -17.53947 -17.41403 -16.77959 -16.57360 -16.26373 -15.78812 -15.65375 -15.49555 -15.37401 -14.97551 -14.54624 -14.49162 -14.33111 -14.08651 -13.78042 -13.76054 -13.19159 -13.16305 -13.07091 -12.94931 -12.74474 -12.70113 -12.62949 -12.22773 -12.13175 -12.11810 -11.91784 -11.89772 -11.60148 -11.42401 -10.96916 -10.77600 -10.61531 -10.56286 -10.00197 -9.83203 -8.98456 -7.89370 -5.27378 -0.83008 0.05517 0.61620 1.34981 1.45743 1.49234 1.55168 1.80995 2.00706 2.47044 2.99383 3.09045 3.31558 3.42591 3.54353 3.75417 3.80094 3.99691 4.03379 4.03745 4.10987 4.14448 4.17351 4.36835 4.43771 4.45876 4.49270 4.68884 4.79072 4.83709 4.84964 4.95549 4.97174 4.99088 5.12052 5.33853 5.36758 5.37911 5.41946 5.42722 5.64505 6.11083 6.15345 6.53146 6.83083 6.89597 7.02503 7.67316 8.29682 9.20060 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.002419 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.570185 B =11572.345606 C =11850.202296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.137 4.137 4 C 0.065 3.935 5 N -0.488 5.488 6 C 0.083 3.917 7 C -0.322 4.322 8 C 0.590 3.410 9 O -0.584 6.584 10 N -0.583 5.583 11 C 0.046 3.954 12 C 0.146 3.854 13 H 0.078 0.922 14 C 0.134 3.866 15 N -0.620 5.620 16 C -0.247 4.247 17 H 0.086 0.914 18 C -0.062 4.062 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.280 1.280 24 C 0.164 3.836 25 C 0.085 3.915 26 H 0.093 0.907 27 O -0.572 6.572 28 S 0.209 5.791 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.230 0.770 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.249 0.751 43 H 0.017 0.983 44 H 0.028 0.972 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 15.126 -18.700 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.210 4.210 5 N -0.202 5.202 6 C -0.075 4.075 7 C -0.446 4.446 8 C 0.379 3.621 9 O -0.465 6.465 10 N -0.313 5.313 11 C -0.095 4.095 12 C 0.041 3.959 13 H 0.096 0.904 14 C 0.008 3.992 15 N -0.348 5.348 16 C -0.376 4.376 17 H 0.103 0.897 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.207 1.207 24 C 0.038 3.962 25 C 0.025 3.975 26 H 0.110 0.890 27 O -0.380 6.380 28 S 0.469 5.531 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.047 0.953 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.669 14.481 -20.079 28.279 hybrid contribution 0.712 -0.760 2.453 2.665 sum -12.957 13.721 -17.626 25.823 Atomic orbital electron populations 1.21806 0.91701 1.02449 1.03626 1.20176 0.97733 0.96594 0.90006 1.21806 1.01017 0.93144 1.03621 1.28276 0.97779 0.96761 0.98155 1.66283 1.24297 1.30811 0.98800 1.24054 0.92039 0.88604 1.02776 1.25413 1.14406 1.06251 0.98529 1.17115 0.79101 0.83923 0.81954 1.90814 1.49032 1.32354 1.74333 1.47420 1.48460 1.30494 1.04951 1.22785 0.96946 0.88780 1.00970 1.21989 0.91471 0.91717 0.90752 0.90367 1.21897 0.95744 0.94042 0.87504 1.44483 1.14946 1.44348 1.31006 1.19417 0.92923 1.18548 1.06670 0.89651 1.25683 1.01361 0.98403 1.00132 1.70133 1.32763 1.27154 1.29697 0.85112 0.78720 0.77474 0.77767 1.19775 1.21959 1.20660 1.21602 0.86056 0.94113 0.94456 1.23349 0.93685 0.87120 0.93370 0.88978 1.86476 1.66183 1.41760 1.43549 1.84113 1.44579 1.24712 0.99697 0.89220 0.92843 0.92338 0.87280 0.92827 0.89233 0.92343 0.75488 0.88889 0.88101 0.88648 0.94079 0.92616 0.94167 0.96480 0.95342 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.17 71.98 0.66 -0.66 16 2 C -0.02 -0.26 3.35 -11.54 -0.04 -0.29 16 3 C -0.14 -1.32 9.17 71.98 0.66 -0.66 16 4 C 0.06 1.16 5.90 88.46 0.52 1.68 16 5 N -0.49 -9.83 10.49 -190.31 -2.00 -11.82 16 6 C 0.08 1.72 9.54 84.23 0.80 2.52 16 7 C -0.32 -8.46 6.42 23.88 0.15 -8.31 16 8 C 0.59 20.03 7.64 86.45 0.66 20.69 16 9 O -0.58 -25.14 16.36 -4.30 -0.07 -25.21 16 10 N -0.58 -17.91 2.91 -819.52 -2.38 -20.29 16 11 C 0.05 0.89 7.29 127.77 0.93 1.82 16 12 C 0.15 5.66 3.14 46.38 0.15 5.81 16 13 H 0.08 3.68 7.02 -2.39 -0.02 3.67 16 14 C 0.13 5.51 6.76 86.85 0.59 6.10 16 15 N -0.62 -31.69 3.39 -691.96 -2.35 -34.04 16 16 C -0.25 -13.75 10.28 84.04 0.86 -12.89 16 17 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 18 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 19 N -0.95 -56.28 10.31 21.65 0.22 -56.05 16 20 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.16 7.96 5.15 86.73 0.45 8.41 16 25 C 0.09 3.20 3.82 31.78 0.12 3.33 16 26 H 0.09 2.85 6.65 -2.39 -0.02 2.83 16 27 O -0.57 -21.22 13.39 -148.98 -1.99 -23.22 16 28 S 0.21 4.60 23.00 -56.49 -1.30 3.30 16 29 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.84 8.12 -2.38 -0.02 0.82 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.23 3.42 3.62 -2.91 -0.01 3.41 16 37 H 0.09 1.39 7.09 -2.39 -0.02 1.37 16 38 H 0.10 1.52 5.82 -2.39 -0.01 1.51 16 39 H 0.09 1.84 6.04 -2.39 -0.01 1.82 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.99 6.66 -2.39 -0.02 1.98 16 42 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 43 H 0.02 0.97 7.29 -2.39 -0.02 0.95 16 44 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 45 H 0.39 10.96 9.12 -74.06 -0.68 10.29 16 Total: -1.00 -77.76 371.92 -0.50 -78.27 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.36 Total: 17.14 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.98 Total: 24.49 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.51 Total: -122.20 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -2.06 Total: -48.43 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.30 Total: 3.30 kcal Total: -77.76 -0.50 -78.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047659163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.440 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds