Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 C 1.50693 * 109.46876 * 119.99512 * 2 1 3 5 5 N 1.30940 * 122.90659 * 306.81344 * 4 2 1 6 6 C 1.29436 * 117.36429 * 179.97438 * 5 4 2 7 7 S 1.70951 * 110.39017 * 359.72453 * 6 5 4 8 8 C 1.35671 * 122.90259 * 126.81257 * 4 2 1 9 9 C 1.46681 * 126.12989 * 0.02562 * 8 4 2 10 10 O 1.21689 * 119.99833 * 6.35675 * 9 8 4 11 11 N 1.34775 * 120.00004 * 186.36250 * 9 8 4 12 12 C 1.46496 * 119.99803 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46725 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.68309 * 300.44675 * 13 12 11 15 15 C 1.53304 * 109.68045 * 179.97438 * 13 12 11 16 16 O 1.42954 * 109.22265 * 187.97537 * 15 13 12 17 17 C 1.42960 * 114.17104 * 62.58126 * 16 15 13 18 18 C 1.53302 * 109.22305 * 297.42257 * 17 16 15 19 19 N 1.47150 * 109.68228 * 60.97334 * 13 12 11 20 20 C 1.36934 * 120.98212 * 350.22688 * 19 13 12 21 21 H 1.08001 * 120.00124 * 50.06976 * 20 19 13 22 22 C 1.38810 * 120.00354 * 230.07278 * 20 19 13 23 23 N 1.31623 * 120.00322 * 188.85930 * 22 20 19 24 24 Si 1.86800 * 120.00033 * 8.85121 * 22 20 19 25 25 H 1.48497 * 109.47023 * 84.34526 * 24 22 20 26 26 H 1.48499 * 109.47108 * 204.34761 * 24 22 20 27 27 H 1.48498 * 109.47135 * 324.35044 * 24 22 20 28 28 H 1.08997 * 109.47860 * 299.99995 * 1 2 3 29 29 H 1.09005 * 109.46984 * 60.00387 * 1 2 3 30 30 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47389 * 239.99908 * 2 1 3 32 32 H 1.08999 * 109.46858 * 300.00099 * 3 2 1 33 33 H 1.09001 * 109.47105 * 59.99734 * 3 2 1 34 34 H 1.09000 * 109.47080 * 179.97438 * 3 2 1 35 35 H 1.08000 * 124.80594 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99923 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47507 * 60.00133 * 12 11 9 38 38 H 1.09000 * 109.47466 * 299.99428 * 12 11 9 39 39 H 1.08998 * 109.50902 * 307.90242 * 15 13 12 40 40 H 1.09002 * 109.50826 * 68.00053 * 15 13 12 41 41 H 1.09003 * 109.50773 * 57.33967 * 17 16 15 42 42 H 1.08997 * 109.52014 * 177.49416 * 17 16 15 43 43 H 1.09000 * 109.68252 * 172.02372 * 18 17 16 44 44 H 1.09003 * 109.67888 * 292.57346 * 18 17 16 45 45 H 0.96994 * 120.00516 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.6482 -0.3931 2.4415 6 6 2.1479 -1.0749 3.4217 7 16 3.2212 -2.2675 2.8317 8 6 2.9214 -1.7337 1.1793 9 6 3.5206 -2.2989 -0.0343 10 8 3.3197 -1.7736 -1.1135 11 7 4.2936 -3.4001 0.0457 12 6 4.8916 -3.9649 -1.1665 13 6 5.7156 -5.2010 -0.8003 14 1 6.5011 -4.9235 -0.0974 15 6 6.3433 -5.7965 -2.0659 16 8 6.9537 -7.0485 -1.7441 17 6 6.0390 -8.0427 -1.2765 18 6 5.3957 -7.5622 0.0295 19 7 4.8419 -6.2166 -0.1918 20 6 3.5516 -5.9189 0.1570 21 1 2.8966 -5.4393 -0.5553 22 6 3.0854 -6.2335 1.4261 23 7 1.8054 -6.1098 1.7065 24 14 4.2747 -6.8326 2.7361 25 1 4.9101 -5.6654 3.3988 26 1 3.5369 -7.6338 3.7454 27 1 5.3227 -7.6746 2.1054 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.9162 -0.9157 4.4645 36 1 4.4539 -3.8186 0.9059 37 1 5.5390 -3.2220 -1.6324 38 1 4.1025 -4.2473 -1.8634 39 1 5.5696 -5.9512 -2.8178 40 1 7.0974 -5.1122 -2.4548 41 1 5.2642 -8.2055 -2.0256 42 1 6.5747 -8.9748 -1.0970 43 1 4.5968 -8.2453 0.3181 44 1 6.1484 -7.5232 0.8169 45 1 1.4797 -6.3292 2.5933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051155856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -4.241714 kcal Electronic energy + Delta-G solvation = -28744.086017 eV Core-core repulsion = 24889.745168 eV Total energy + Delta-G solvation = -3854.340849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17092 -39.12145 -38.26772 -35.49839 -34.56198 -33.59893 -31.91186 -31.21605 -29.87830 -27.57984 -26.89222 -26.15008 -24.96164 -23.39042 -22.54038 -21.87630 -20.83460 -20.08754 -18.94224 -17.59168 -17.01621 -16.36377 -15.92598 -15.88550 -15.40242 -15.12843 -14.73793 -14.52624 -14.41239 -14.10533 -14.03828 -13.88794 -13.68140 -13.36453 -12.95197 -12.70634 -12.63165 -12.18016 -12.09202 -11.93608 -11.90627 -11.61660 -10.98728 -10.92566 -10.91126 -10.85533 -10.77813 -10.57975 -10.29875 -9.93984 -9.68145 -9.62195 -9.32230 -9.22908 -9.08830 -8.66777 -8.59831 -8.30283 -6.76898 -6.14476 -3.79682 0.57635 1.51872 1.90159 2.77317 3.17566 3.30571 3.33716 3.53228 3.79751 4.27792 4.34561 4.36265 4.67404 5.06460 5.10988 5.16791 5.33102 5.40390 5.45444 5.52332 5.57013 5.65251 5.74940 5.80487 5.87255 5.88356 5.90768 6.00587 6.07217 6.09179 6.10348 6.20469 6.23608 6.37959 6.38879 6.49639 6.57366 6.69818 6.73989 7.05220 7.58407 7.84050 7.89984 8.10349 8.26505 8.70195 8.72980 9.46349 9.93954 10.97232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.004555 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.549291 B = 6145.263572 C = 7324.867205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.132 4.132 4 C 0.139 3.861 5 N -0.470 5.470 6 C 0.013 3.987 7 S 0.181 5.819 8 C -0.270 4.270 9 C 0.594 3.406 10 O -0.544 6.544 11 N -0.681 5.681 12 C 0.140 3.860 13 C 0.122 3.878 14 H 0.045 0.955 15 C 0.056 3.944 16 O -0.389 6.389 17 C 0.042 3.958 18 C 0.102 3.898 19 N -0.606 5.606 20 C -0.274 4.274 21 H 0.078 0.922 22 C 0.051 3.949 23 N -0.891 5.891 24 Si 0.838 3.162 25 H -0.281 1.281 26 H -0.297 1.297 27 H -0.235 1.235 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.200 0.800 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 7.056 0.459 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.190 4.190 4 C 0.000 4.000 5 N -0.184 5.184 6 C -0.282 4.282 7 S 0.437 5.563 8 C -0.394 4.394 9 C 0.380 3.620 10 O -0.426 6.426 11 N -0.330 5.330 12 C 0.016 3.984 13 C 0.016 3.984 14 H 0.062 0.938 15 C -0.023 4.023 16 O -0.307 6.307 17 C -0.036 4.036 18 C -0.023 4.023 19 N -0.333 5.333 20 C -0.402 4.402 21 H 0.095 0.905 22 C -0.153 4.153 23 N -0.530 5.530 24 Si 0.666 3.334 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.160 1.160 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.216 0.784 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.825 6.958 0.521 8.484 hybrid contribution -0.242 -0.355 1.003 1.091 sum 4.584 6.603 1.524 8.181 Atomic orbital electron populations 1.21744 0.94200 1.01962 1.01622 1.20297 0.95999 0.95903 0.94292 1.21697 1.00810 0.94936 1.01580 1.20544 0.93053 0.93257 0.93142 1.65990 1.25447 1.28335 0.98621 1.28567 0.99729 0.96515 1.03356 1.84270 1.41323 1.32359 0.98353 1.25540 1.10441 1.05745 0.97695 1.16589 0.78646 0.80462 0.86347 1.90640 1.61778 1.62107 1.28101 1.45773 1.48931 1.26354 1.11969 1.21138 0.96594 0.93310 0.87325 1.21580 0.92851 0.89509 0.94488 0.93786 1.22877 0.97387 0.85763 0.96268 1.87822 1.34934 1.22150 1.85817 1.23151 0.92760 0.90487 0.97168 1.22376 0.97464 0.88091 0.94351 1.44354 1.10761 1.04636 1.73553 1.18652 0.85535 1.40019 0.96041 0.90454 1.25738 0.95497 0.97067 0.96961 1.69780 1.12816 1.48765 1.21652 0.87763 0.82799 0.80323 0.82494 1.20705 1.22359 1.16015 0.92286 0.92433 0.92783 0.85774 0.92294 0.92621 0.93008 0.78363 0.75379 0.91905 0.90895 0.93002 0.89457 0.93323 0.89944 0.90797 0.94039 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.08 37.16 0.34 -1.68 16 2 C -0.04 -0.72 3.10 -91.77 -0.28 -1.00 16 3 C -0.13 -1.81 9.18 37.16 0.34 -1.47 16 4 C 0.14 2.45 5.40 -83.89 -0.45 1.99 16 5 N -0.47 -7.72 10.26 -11.53 -0.12 -7.84 16 6 C 0.01 0.19 12.22 51.75 0.63 0.82 16 7 S 0.18 2.97 22.37 -107.50 -2.41 0.56 16 8 C -0.27 -5.05 6.48 -37.09 -0.24 -5.29 16 9 C 0.59 11.94 7.77 -12.85 -0.10 11.84 16 10 O -0.54 -11.52 14.05 5.20 0.07 -11.45 16 11 N -0.68 -13.32 4.12 -61.62 -0.25 -13.57 16 12 C 0.14 2.52 4.51 -4.04 -0.02 2.50 16 13 C 0.12 2.18 3.20 -67.42 -0.22 1.97 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.06 0.88 6.29 37.31 0.23 1.12 16 16 O -0.39 -6.69 10.74 -35.23 -0.38 -7.07 16 17 C 0.04 0.71 6.99 37.31 0.26 0.97 16 18 C 0.10 1.98 4.27 -3.51 -0.02 1.96 16 19 N -0.61 -12.63 2.45 -164.27 -0.40 -13.03 16 20 C -0.27 -6.64 6.64 -15.06 -0.10 -6.74 16 21 H 0.08 2.16 7.12 -52.49 -0.37 1.78 16 22 C 0.05 1.28 5.35 -17.43 -0.09 1.18 16 23 N -0.89 -24.41 13.97 55.49 0.78 -23.64 16 24 Si 0.84 18.80 26.75 -169.99 -4.55 14.25 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.24 -4.89 3.88 56.52 0.22 -4.67 16 28 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.12 2.26 5.06 -51.93 -0.26 2.00 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.41 8.33 6.52 -40.82 -0.27 8.07 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.44 7.57 -51.93 -0.39 1.05 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.50 6.88 -51.93 -0.36 1.15 16 44 H 0.04 0.82 6.12 -51.93 -0.32 0.50 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -28.89 366.51 -8.23 -37.12 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.78 Total: 10.96 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 0.29 Total: 8.18 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.00 Total: -58.07 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.31 Total: -18.52 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.55 Total: 14.25 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.41 Total: 0.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.89 -8.23 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051155856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.875 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds