Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53012 * 109.46668 * 2 1 4 4 C 1.50697 * 109.46725 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80709 * 90.02947 * 4 3 2 6 6 C 1.30944 * 117.36362 * 179.68239 * 5 4 3 7 7 C 1.50696 * 122.90264 * 180.34170 * 6 5 4 8 8 C 1.35656 * 114.19036 * 0.52107 * 6 5 4 9 9 C 1.46683 * 126.12888 * 179.78622 * 8 6 5 10 10 O 1.21684 * 120.00315 * 359.71315 * 9 8 6 11 11 N 1.34787 * 120.00016 * 179.71408 * 9 8 6 12 12 C 1.46494 * 120.00004 * 179.97438 * 11 9 8 13 13 H 1.09008 * 110.88436 * 37.42922 * 12 11 9 14 14 C 1.54908 * 111.00587 * 273.54798 * 12 11 9 15 15 N 1.47425 * 104.92961 * 204.82382 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08997 * 110.72163 * 96.18354 * 25 24 15 27 27 O 1.42898 * 110.87178 * 219.38109 * 25 24 15 28 28 S 1.70957 * 124.80290 * 269.99115 * 4 3 2 29 29 H 1.08994 * 109.47499 * 60.00348 * 1 2 3 30 30 H 1.09008 * 109.46410 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47368 * 300.00126 * 1 2 3 32 32 H 1.08990 * 109.47112 * 240.00313 * 2 1 3 33 33 H 1.08997 * 109.47358 * 119.99155 * 2 1 3 34 34 H 1.08993 * 109.46744 * 59.99630 * 3 2 1 35 35 H 1.09006 * 109.46539 * 299.99921 * 3 2 1 36 36 H 1.09000 * 109.47331 * 270.19003 * 7 6 5 37 37 H 1.09001 * 109.47280 * 30.19481 * 7 6 5 38 38 H 1.09000 * 109.47071 * 150.19216 * 7 6 5 39 39 H 0.96999 * 119.99460 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.36632 * 323.71778 * 14 12 11 41 41 H 1.08995 * 110.36781 * 85.93015 * 14 12 11 42 42 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 44 44 H 1.08999 * 109.87327 * 118.35916 * 24 15 14 45 45 H 0.96700 * 114.00884 * 293.61196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 3.5469 1.4427 -0.0006 5 7 4.2853 1.4434 -1.0637 6 6 5.5837 1.4497 -0.8946 7 6 6.5588 1.4589 -2.0435 8 6 5.9752 1.4435 0.4042 9 6 7.3591 1.4439 0.8904 10 8 8.2825 1.4449 0.0979 11 7 7.6081 1.4430 2.2151 12 6 8.9902 1.4428 2.7006 13 1 9.6248 2.0623 2.0668 14 6 9.5439 -0.0006 2.7993 15 7 10.6110 0.0705 3.8140 16 6 11.6720 -0.7890 3.9180 17 1 11.7768 -1.6047 3.2179 18 6 12.6122 -0.6124 4.9238 19 7 12.4842 0.3814 5.7773 20 14 14.0599 -1.7844 5.0651 21 1 14.8592 -1.7370 3.8146 22 1 14.9125 -1.3818 6.2125 23 1 13.5593 -3.1657 5.2807 24 6 10.3438 1.2198 4.6955 25 6 9.0609 1.9054 4.1799 26 1 8.1889 1.5588 4.7345 27 8 9.1762 3.3275 4.2600 28 16 4.5232 1.4427 1.4027 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6765 1.9564 -0.8901 36 1 6.7968 0.4334 -2.3263 37 1 6.1140 1.9762 -2.8935 38 1 7.4710 1.9735 -1.7418 39 1 6.8720 1.4418 2.8468 40 1 8.7600 -0.6865 3.1206 41 1 9.9533 -0.3163 1.8398 42 1 13.1414 0.5050 6.4799 43 1 11.1793 1.9189 4.6558 44 1 10.1944 0.8752 5.7187 45 1 9.2240 3.6680 5.1638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078173024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -49.287129 kcal Electronic energy + Delta-G solvation = -26879.204741 eV Core-core repulsion = 23022.910576 eV Total energy + Delta-G solvation = -3856.294165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59599 -40.66504 -39.32005 -36.70616 -36.23853 -35.69959 -33.72403 -32.78675 -30.63845 -29.50794 -29.10258 -28.37504 -26.35109 -24.35836 -23.37969 -22.35863 -22.24055 -21.88588 -20.66010 -19.16026 -19.04824 -18.25900 -17.93424 -17.31995 -16.67048 -16.57056 -16.02474 -15.93232 -15.83490 -15.49969 -15.16857 -14.85034 -14.70689 -14.49618 -14.34624 -14.17653 -13.81515 -13.62928 -13.33280 -13.17912 -13.17496 -13.00120 -12.80452 -12.71176 -12.57452 -12.42865 -12.14688 -12.09945 -11.89459 -11.64814 -11.58344 -11.31318 -10.98931 -10.79003 -10.76037 -10.63628 -10.30658 -9.78671 -8.99377 -7.90256 -5.27490 -0.87538 0.08129 0.46548 1.29181 1.45247 1.48805 1.54722 1.83262 1.99097 2.46560 2.89361 3.07550 3.30389 3.47299 3.60943 3.73999 3.83532 3.99135 3.99767 4.06883 4.09766 4.14690 4.39355 4.45490 4.49988 4.65391 4.66624 4.70380 4.78736 4.80400 4.85764 4.90044 4.94355 5.21169 5.24794 5.28507 5.33443 5.36353 5.41937 5.45743 5.63884 6.11166 6.26526 6.53904 6.84294 6.97017 7.03043 7.66692 8.29550 9.19592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002405 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.960536 B =11640.223934 C =11766.228919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.047 4.047 4 C 0.072 3.928 5 N -0.498 5.498 6 C 0.146 3.854 7 C -0.088 4.088 8 C -0.330 4.330 9 C 0.596 3.404 10 O -0.555 6.555 11 N -0.697 5.697 12 C 0.155 3.845 13 H 0.077 0.923 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.249 4.249 17 H 0.081 0.919 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.162 3.838 25 C 0.092 3.908 26 H 0.095 0.905 27 O -0.567 6.567 28 S 0.214 5.786 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.410 0.590 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.023 0.977 44 H 0.029 0.971 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.614 3.648 -7.509 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.088 4.088 4 C -0.203 4.203 5 N -0.213 5.213 6 C 0.007 3.993 7 C -0.147 4.147 8 C -0.454 4.454 9 C 0.383 3.617 10 O -0.435 6.435 11 N -0.348 5.348 12 C 0.049 3.951 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.349 5.349 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.200 1.200 24 C 0.036 3.964 25 C 0.031 3.969 26 H 0.112 0.888 27 O -0.375 6.375 28 S 0.473 5.527 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.246 0.754 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -26.299 3.592 -7.933 27.703 hybrid contribution 1.719 -0.534 0.334 1.831 sum -24.579 3.058 -7.599 25.908 Atomic orbital electron populations 1.21742 0.93412 1.02572 1.02863 1.21534 0.97517 0.94106 1.02516 1.20674 0.81886 0.99889 1.06369 1.28097 1.03136 0.98176 0.90849 1.66157 1.03901 1.18962 1.32278 1.20838 0.90538 0.94023 0.93888 1.20621 0.96334 1.03841 0.93903 1.25289 0.98001 1.23734 0.98380 1.16970 0.86723 0.75680 0.82336 1.90788 1.45773 1.51428 1.55528 1.45564 1.08222 1.74774 1.06287 1.21806 0.82307 0.96526 0.94457 0.90466 1.21903 0.90963 0.94301 0.92350 1.44558 1.25872 1.31983 1.32501 1.19387 1.00342 1.06445 1.11555 0.90154 1.25651 1.01678 1.00382 0.97690 1.70104 1.37385 1.32763 1.19322 0.85120 0.78689 0.78353 0.76960 1.20665 1.21628 1.20021 1.21672 0.93178 0.88487 0.93055 1.23127 0.97967 0.81564 0.94218 0.88763 1.86433 1.96859 1.19520 1.34710 1.83543 0.93830 1.65355 1.09958 0.92026 0.92128 0.91300 0.92546 0.91381 0.86630 0.87676 0.89863 0.89334 0.89919 0.75351 0.94273 0.94602 0.94055 0.95852 0.95263 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 71.98 0.71 -0.21 16 2 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 3 C -0.05 -0.46 5.79 29.85 0.17 -0.29 16 4 C 0.07 1.26 6.64 88.46 0.59 1.84 16 5 N -0.50 -11.56 10.50 -178.29 -1.87 -13.43 16 6 C 0.15 3.84 6.79 42.09 0.29 4.13 16 7 C -0.09 -2.22 9.69 71.23 0.69 -1.53 16 8 C -0.33 -8.75 6.48 23.88 0.15 -8.60 16 9 C 0.60 19.42 7.78 86.45 0.67 20.09 16 10 O -0.56 -21.99 14.02 -4.30 -0.06 -22.05 16 11 N -0.70 -21.10 5.23 -439.91 -2.30 -23.40 16 12 C 0.16 5.88 3.04 46.38 0.14 6.02 16 13 H 0.08 3.41 7.73 -2.38 -0.02 3.40 16 14 C 0.13 5.73 6.92 86.85 0.60 6.33 16 15 N -0.62 -32.48 3.40 -691.30 -2.35 -34.83 16 16 C -0.25 -14.19 10.28 84.03 0.86 -13.32 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 19 N -0.95 -55.98 10.34 21.65 0.22 -55.76 16 20 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 C 0.16 7.76 5.16 86.68 0.45 8.20 16 25 C 0.09 3.26 3.95 31.78 0.13 3.38 16 26 H 0.09 2.73 8.00 -2.39 -0.02 2.71 16 27 O -0.57 -18.51 13.40 -148.98 -2.00 -20.50 16 28 S 0.21 3.72 22.31 -56.49 -1.26 2.46 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.43 6.02 -2.39 -0.01 2.41 16 39 H 0.41 9.69 7.70 -92.71 -0.71 8.98 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.02 1.28 7.31 -2.38 -0.02 1.27 16 44 H 0.03 1.50 7.52 -2.39 -0.02 1.49 16 45 H 0.40 9.40 9.12 -74.06 -0.68 8.72 16 Total: -1.00 -74.35 382.98 -1.85 -76.20 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.36 Total: 21.26 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.10 Total: 22.13 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.30 Total: -127.41 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -2.06 Total: -42.55 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.26 Total: 2.46 kcal Total: -74.35 -1.85 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078173024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.914 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds