Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47288 * 2 1 4 4 C 1.53006 * 109.46995 * 240.00049 * 2 1 3 5 5 C 1.50693 * 109.47268 * 120.00278 * 2 1 3 6 6 N 1.29433 * 124.80774 * 60.01878 * 5 2 1 7 7 C 1.30940 * 117.36213 * 179.68863 * 6 5 2 8 8 C 1.35658 * 114.19670 * 0.52895 * 7 6 5 9 9 C 1.46680 * 126.13310 * 179.78739 * 8 7 6 10 10 O 1.21687 * 119.99885 * 179.68790 * 9 8 7 11 11 N 1.34773 * 120.00136 * 359.68258 * 9 8 7 12 12 C 1.46495 * 120.00228 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.91402 * 37.45355 * 12 11 9 14 14 C 1.54909 * 111.00687 * 273.55146 * 12 11 9 15 15 N 1.47428 * 104.83131 * 204.91337 * 14 12 11 16 16 C 1.36933 * 125.64624 * 204.09001 * 15 14 12 17 17 H 1.07997 * 120.00255 * 356.50750 * 16 15 14 18 18 C 1.38815 * 120.00201 * 176.51219 * 16 15 14 19 19 N 1.31610 * 120.00358 * 211.30819 * 18 16 15 20 20 Si 1.86802 * 119.99642 * 31.02779 * 18 16 15 21 21 H 1.48507 * 109.47290 * 275.58364 * 20 18 16 22 22 H 1.48497 * 109.47428 * 35.58074 * 20 18 16 23 23 H 1.48501 * 109.47294 * 155.58419 * 20 18 16 24 24 C 1.47022 * 108.70380 * 24.36045 * 15 14 12 25 25 C 1.54335 * 107.26290 * 358.58036 * 24 15 14 26 26 H 1.09002 * 110.51563 * 96.45809 * 25 24 15 27 27 O 1.42900 * 110.84894 * 219.67340 * 25 24 15 28 28 S 1.70957 * 124.80469 * 240.00066 * 5 2 1 29 29 H 1.09004 * 109.46986 * 300.00417 * 1 2 3 30 30 H 1.09005 * 109.47281 * 59.99628 * 1 2 3 31 31 H 1.08999 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46967 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46843 * 300.00050 * 3 2 1 34 34 H 1.08996 * 109.47172 * 59.99931 * 3 2 1 35 35 H 1.08999 * 109.47072 * 300.00042 * 4 2 1 36 36 H 1.08995 * 109.46881 * 60.00231 * 4 2 1 37 37 H 1.08997 * 109.46856 * 179.97438 * 4 2 1 38 38 H 1.08000 * 122.90028 * 180.34491 * 7 6 5 39 39 H 0.97006 * 119.99818 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.36731 * 86.07837 * 14 12 11 41 41 H 1.08998 * 110.36861 * 323.75432 * 14 12 11 42 42 H 0.97002 * 120.00248 * 354.68907 * 19 18 16 43 43 H 1.08996 * 109.88664 * 118.13109 * 24 15 14 44 44 H 1.09002 * 109.88022 * 239.29296 * 24 15 14 45 45 H 0.96698 * 114.00350 * 293.69820 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7779 -1.9444 1.5266 7 6 2.2958 -2.4170 2.6325 8 6 3.0335 -1.5171 3.3298 9 6 3.7245 -1.7639 4.5999 10 8 4.3630 -0.8729 5.1284 11 7 3.6522 -2.9774 5.1817 12 6 4.3419 -3.2238 6.4505 13 1 4.2891 -2.3487 7.0983 14 6 5.8120 -3.6488 6.2101 15 7 6.1812 -4.4246 7.4081 16 6 7.4542 -4.6107 7.8773 17 1 8.2957 -4.2175 7.3262 18 6 7.6631 -5.3048 9.0611 19 7 8.6849 -4.9986 9.8320 20 14 6.4893 -6.6682 9.5639 21 1 5.3201 -6.0808 10.2665 22 1 6.0262 -7.3940 8.3540 23 1 7.1882 -7.6136 10.4712 24 6 4.9571 -4.9707 8.0120 25 6 3.7674 -4.4775 7.1614 26 1 3.4784 -5.2353 6.4332 27 8 2.6598 -4.1245 7.9924 28 16 3.0193 -0.0007 2.4323 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 2.1460 -3.4343 2.9626 39 1 3.1435 -3.6878 4.7603 40 1 6.4502 -2.7704 6.1154 41 1 5.8861 -4.2705 5.3178 42 1 9.3352 -4.3420 9.5373 43 1 4.9942 -6.0600 8.0048 44 1 4.8547 -4.6080 9.0348 45 1 2.2643 -4.8731 8.4596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078235249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -12.501848 kcal Electronic energy + Delta-G solvation = -26984.400304 eV Core-core repulsion = 23129.701269 eV Total energy + Delta-G solvation = -3854.699035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50585 -39.63389 -38.16957 -37.02054 -35.39431 -34.29924 -32.12722 -30.66712 -28.51981 -27.91851 -27.71287 -27.71023 -26.17133 -23.99879 -22.31717 -21.37743 -21.05260 -20.28920 -19.46553 -18.11424 -17.63607 -17.35698 -16.99545 -16.21067 -15.54346 -15.28943 -14.94521 -14.81672 -14.74095 -14.56592 -14.08649 -13.93138 -13.73975 -13.59308 -12.94815 -12.85556 -12.76991 -12.65123 -12.57459 -12.14668 -12.07330 -11.95765 -11.74299 -11.67804 -11.49757 -11.43974 -11.16777 -10.60022 -10.51374 -10.41165 -9.93436 -9.73885 -9.67957 -9.63190 -9.30601 -9.22284 -9.01463 -8.40281 -7.15645 -6.42280 -3.18303 0.01117 0.89341 1.44571 2.23475 3.10428 3.11242 3.34220 3.42681 3.55620 3.61767 4.21101 4.24700 4.40408 4.46105 4.54708 4.66361 4.77791 4.83171 4.93409 5.08480 5.10286 5.15471 5.18814 5.27283 5.29104 5.38736 5.42220 5.44228 5.46367 5.58468 5.69763 5.77695 5.79631 5.82909 5.87781 6.20906 6.28819 6.47287 6.55363 6.65539 7.31988 7.40218 7.61445 7.74110 8.11496 8.29028 8.99227 9.54471 10.18594 11.09052 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.002364 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.202569 B =11839.565474 C =12211.215589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 C -0.158 4.158 4 C -0.135 4.135 5 C 0.048 3.952 6 N -0.475 5.475 7 C 0.091 3.909 8 C -0.296 4.296 9 C 0.594 3.406 10 O -0.529 6.529 11 N -0.703 5.703 12 C 0.142 3.858 13 H 0.110 0.890 14 C 0.133 3.867 15 N -0.602 5.602 16 C -0.340 4.340 17 H 0.081 0.919 18 C -0.018 4.018 19 N -0.908 5.908 20 Si 1.065 2.935 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.297 1.297 24 C 0.078 3.922 25 C 0.088 3.912 26 H 0.068 0.932 27 O -0.558 6.558 28 S 0.235 5.765 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.179 0.821 39 H 0.398 0.602 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 8.163 -21.455 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.005 3.995 3 C -0.216 4.216 4 C -0.193 4.193 5 C -0.227 4.227 6 N -0.188 5.188 7 C -0.067 4.067 8 C -0.420 4.420 9 C 0.379 3.621 10 O -0.406 6.406 11 N -0.354 5.354 12 C 0.037 3.963 13 H 0.128 0.872 14 C 0.005 3.995 15 N -0.331 5.331 16 C -0.467 4.467 17 H 0.099 0.901 18 C -0.219 4.219 19 N -0.548 5.548 20 Si 0.898 3.102 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.225 1.225 24 C -0.048 4.048 25 C 0.028 3.972 26 H 0.086 0.914 27 O -0.363 6.363 28 S 0.495 5.505 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.196 0.804 39 H 0.233 0.767 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.625 9.065 -20.245 28.964 hybrid contribution -0.109 -1.066 -0.895 1.396 sum -18.734 7.999 -21.140 29.357 Atomic orbital electron populations 1.21848 0.91985 1.03219 1.02260 1.19292 0.96811 0.94027 0.89371 1.22073 1.01937 0.94136 1.03486 1.21850 1.01312 1.01097 0.95081 1.27607 0.99892 0.93880 1.01309 1.66007 1.23621 1.11822 1.17399 1.22135 0.94195 1.00743 0.89640 1.25868 1.12081 0.99825 1.04272 1.16665 0.80072 0.82919 0.82477 1.90881 1.41903 1.43613 1.64176 1.45602 1.53098 1.12434 1.24238 1.22289 0.92307 0.98447 0.83275 0.87238 1.21835 0.91628 0.95561 0.90436 1.44562 1.01957 1.58733 1.27861 1.19959 0.81848 1.36843 1.08028 0.90084 1.25676 1.02619 1.01939 0.91709 1.70899 1.16450 1.35757 1.31692 0.83877 0.74700 0.76975 0.74621 1.21917 1.22146 1.22510 1.22476 0.86851 0.97629 0.97857 1.23018 0.86653 0.95492 0.92057 0.91383 1.86525 1.47544 1.38333 1.63862 1.84103 1.43425 1.10987 1.12012 0.92397 0.91441 0.91323 0.91607 0.90372 0.91625 0.91312 0.91442 0.92361 0.80373 0.76722 0.92277 0.95610 0.92435 0.94125 0.92427 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.45 37.15 0.31 -0.50 16 2 C 0.01 0.06 0.99 -155.66 -0.15 -0.09 16 3 C -0.16 -0.85 7.53 37.16 0.28 -0.57 16 4 C -0.13 -0.84 8.45 37.16 0.31 -0.52 16 5 C 0.05 0.46 5.78 -13.29 -0.08 0.38 16 6 N -0.48 -5.13 10.49 -11.50 -0.12 -5.25 16 7 C 0.09 0.98 10.93 -18.85 -0.21 0.77 16 8 C -0.30 -3.73 6.48 -37.10 -0.24 -3.97 16 9 C 0.59 9.27 7.78 -12.85 -0.10 9.17 16 10 O -0.53 -10.33 16.71 5.20 0.09 -10.24 16 11 N -0.70 -10.02 5.21 -53.04 -0.28 -10.29 16 12 C 0.14 2.54 3.04 -65.79 -0.20 2.34 16 13 H 0.11 2.24 7.73 -51.93 -0.40 1.84 16 14 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 15 N -0.60 -14.96 3.38 -170.07 -0.57 -15.53 16 16 C -0.34 -9.84 10.43 -15.06 -0.16 -10.00 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C -0.02 -0.53 5.45 -17.43 -0.09 -0.62 16 19 N -0.91 -28.44 13.70 55.49 0.76 -27.68 16 20 Si 1.07 26.17 24.65 -169.99 -4.19 21.98 16 21 H -0.29 -6.70 6.36 56.52 0.36 -6.34 16 22 H -0.29 -6.73 6.35 56.52 0.36 -6.37 16 23 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 24 C 0.08 1.66 4.61 -3.06 -0.01 1.64 16 25 C 0.09 1.44 3.94 -24.89 -0.10 1.35 16 26 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 27 O -0.56 -8.40 13.39 -35.23 -0.47 -8.87 16 28 S 0.23 2.52 21.39 -107.50 -2.30 0.23 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.18 1.42 7.15 -52.49 -0.38 1.04 16 39 H 0.40 4.28 7.22 -40.82 -0.29 3.99 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 43 H 0.04 0.87 4.45 -51.93 -0.23 0.64 16 44 H 0.06 1.33 6.59 -51.93 -0.34 0.99 16 45 H 0.38 3.96 9.12 45.56 0.42 4.37 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -35.92 375.70 -7.81 -43.73 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.93 Total: 4.14 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.45 Total: 2.14 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.21 Total: -58.76 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.11 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.19 Total: 21.98 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.30 Total: 0.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.92 -7.81 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078235249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.225 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds