Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47288 * 2 1 4 4 C 1.53006 * 109.46995 * 240.00049 * 2 1 3 5 5 C 1.50693 * 109.47268 * 120.00278 * 2 1 3 6 6 N 1.29433 * 124.80774 * 60.01878 * 5 2 1 7 7 C 1.30940 * 117.36213 * 179.68863 * 6 5 2 8 8 C 1.35658 * 114.19670 * 0.52895 * 7 6 5 9 9 C 1.46680 * 126.13310 * 179.78739 * 8 7 6 10 10 O 1.21687 * 119.99885 * 179.68790 * 9 8 7 11 11 N 1.34773 * 120.00136 * 359.68258 * 9 8 7 12 12 C 1.46495 * 120.00228 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.91402 * 37.45355 * 12 11 9 14 14 C 1.54909 * 111.00687 * 273.55146 * 12 11 9 15 15 N 1.47428 * 104.83131 * 204.91337 * 14 12 11 16 16 C 1.36933 * 125.64624 * 204.09001 * 15 14 12 17 17 H 1.07997 * 120.00255 * 356.50750 * 16 15 14 18 18 C 1.38815 * 120.00201 * 176.51219 * 16 15 14 19 19 N 1.31610 * 120.00358 * 211.30819 * 18 16 15 20 20 Si 1.86802 * 119.99642 * 31.02779 * 18 16 15 21 21 H 1.48507 * 109.47290 * 275.58364 * 20 18 16 22 22 H 1.48497 * 109.47428 * 35.58074 * 20 18 16 23 23 H 1.48501 * 109.47294 * 155.58419 * 20 18 16 24 24 C 1.47022 * 108.70380 * 24.36045 * 15 14 12 25 25 C 1.54335 * 107.26290 * 358.58036 * 24 15 14 26 26 H 1.09002 * 110.51563 * 96.45809 * 25 24 15 27 27 O 1.42900 * 110.84894 * 219.67340 * 25 24 15 28 28 S 1.70957 * 124.80469 * 240.00066 * 5 2 1 29 29 H 1.09004 * 109.46986 * 300.00417 * 1 2 3 30 30 H 1.09005 * 109.47281 * 59.99628 * 1 2 3 31 31 H 1.08999 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46967 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46843 * 300.00050 * 3 2 1 34 34 H 1.08996 * 109.47172 * 59.99931 * 3 2 1 35 35 H 1.08999 * 109.47072 * 300.00042 * 4 2 1 36 36 H 1.08995 * 109.46881 * 60.00231 * 4 2 1 37 37 H 1.08997 * 109.46856 * 179.97438 * 4 2 1 38 38 H 1.08000 * 122.90028 * 180.34491 * 7 6 5 39 39 H 0.97006 * 119.99818 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.36731 * 86.07837 * 14 12 11 41 41 H 1.08998 * 110.36861 * 323.75432 * 14 12 11 42 42 H 0.97002 * 120.00248 * 354.68907 * 19 18 16 43 43 H 1.08996 * 109.88664 * 118.13109 * 24 15 14 44 44 H 1.09002 * 109.88022 * 239.29296 * 24 15 14 45 45 H 0.96698 * 114.00350 * 293.69820 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7779 -1.9444 1.5266 7 6 2.2958 -2.4170 2.6325 8 6 3.0335 -1.5171 3.3298 9 6 3.7245 -1.7639 4.5999 10 8 4.3630 -0.8729 5.1284 11 7 3.6522 -2.9774 5.1817 12 6 4.3419 -3.2238 6.4505 13 1 4.2891 -2.3487 7.0983 14 6 5.8120 -3.6488 6.2101 15 7 6.1812 -4.4246 7.4081 16 6 7.4542 -4.6107 7.8773 17 1 8.2957 -4.2175 7.3262 18 6 7.6631 -5.3048 9.0611 19 7 8.6849 -4.9986 9.8320 20 14 6.4893 -6.6682 9.5639 21 1 5.3201 -6.0808 10.2665 22 1 6.0262 -7.3940 8.3540 23 1 7.1882 -7.6136 10.4712 24 6 4.9571 -4.9707 8.0120 25 6 3.7674 -4.4775 7.1614 26 1 3.4784 -5.2353 6.4332 27 8 2.6598 -4.1245 7.9924 28 16 3.0193 -0.0007 2.4323 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 2.1460 -3.4343 2.9626 39 1 3.1435 -3.6878 4.7603 40 1 6.4502 -2.7704 6.1154 41 1 5.8861 -4.2705 5.3178 42 1 9.3352 -4.3420 9.5373 43 1 4.9942 -6.0600 8.0048 44 1 4.8547 -4.6080 9.0348 45 1 2.2643 -4.8731 8.4596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078235249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -42.551992 kcal Electronic energy + Delta-G solvation = -26985.703376 eV Core-core repulsion = 23129.701269 eV Total energy + Delta-G solvation = -3856.002107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52526 -40.75513 -39.57241 -37.64124 -36.85097 -35.77938 -34.12068 -31.83237 -30.08244 -29.27544 -28.35300 -28.17760 -27.07659 -25.79436 -23.38592 -22.82950 -22.27819 -21.69887 -20.50167 -19.67259 -18.90144 -18.49506 -18.16790 -17.65022 -16.68587 -16.36630 -16.17993 -15.97771 -15.74248 -15.51285 -15.47840 -15.17861 -14.66306 -14.63481 -14.51255 -14.45312 -14.25081 -13.50473 -13.44150 -13.21899 -13.09442 -13.04260 -12.67718 -12.61374 -12.42218 -12.36152 -12.16803 -12.00398 -11.96437 -11.67699 -11.62537 -11.34269 -10.95206 -10.68652 -10.64210 -10.57714 -10.34245 -10.00028 -9.22657 -8.76753 -5.44584 -0.86250 0.04529 0.62305 1.31224 1.37257 1.50604 1.68666 1.91417 2.02198 2.52004 2.83808 2.88910 3.01177 3.28011 3.51900 3.66095 3.66933 3.80747 3.92116 3.93230 3.97666 4.09491 4.20633 4.27484 4.34822 4.60483 4.68310 4.71683 4.73355 4.83034 4.85347 4.85559 4.92223 4.96365 4.96936 5.04445 5.21095 5.23667 5.36315 5.37941 5.50419 6.01150 6.26814 6.49997 6.75306 6.81221 6.97072 7.39270 8.03328 8.75824 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.002364 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.202569 B =11839.565474 C =12211.215589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.159 4.159 4 C -0.132 4.132 5 C 0.067 3.933 6 N -0.491 5.491 7 C 0.114 3.886 8 C -0.331 4.331 9 C 0.596 3.404 10 O -0.579 6.579 11 N -0.686 5.686 12 C 0.154 3.846 13 H 0.077 0.923 14 C 0.133 3.867 15 N -0.624 5.624 16 C -0.339 4.339 17 H 0.043 0.957 18 C -0.077 4.077 19 N -0.942 5.942 20 Si 1.110 2.890 21 H -0.264 1.264 22 H -0.260 1.260 23 H -0.305 1.305 24 C 0.068 3.932 25 C 0.111 3.889 26 H 0.117 0.883 27 O -0.564 6.564 28 S 0.223 5.777 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.208 0.792 39 H 0.420 0.580 40 H 0.025 0.975 41 H 0.047 0.953 42 H 0.248 0.752 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.117 6.798 -23.777 33.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 C -0.217 4.217 4 C -0.191 4.191 5 C -0.207 4.207 6 N -0.204 5.204 7 C -0.046 4.046 8 C -0.455 4.455 9 C 0.383 3.617 10 O -0.460 6.460 11 N -0.338 5.338 12 C 0.047 3.953 13 H 0.095 0.905 14 C 0.006 3.994 15 N -0.353 5.353 16 C -0.466 4.466 17 H 0.061 0.939 18 C -0.271 4.271 19 N -0.585 5.585 20 Si 0.935 3.065 21 H -0.190 1.190 22 H -0.186 1.186 23 H -0.234 1.234 24 C -0.057 4.057 25 C 0.051 3.949 26 H 0.134 0.866 27 O -0.372 6.372 28 S 0.484 5.516 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.225 0.775 39 H 0.258 0.742 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -22.666 7.694 -22.615 32.930 hybrid contribution 1.138 -0.508 -0.321 1.287 sum -21.528 7.186 -22.937 32.267 Atomic orbital electron populations 1.21845 0.91017 1.02881 1.03273 1.19552 0.97476 0.94652 0.88263 1.22113 1.01793 0.93251 1.04558 1.21851 1.00976 1.00724 0.95541 1.28272 0.97736 0.93525 1.01147 1.66143 1.24395 1.12279 1.17621 1.22597 0.91905 1.01449 0.88644 1.25550 1.14500 1.01402 1.04027 1.17036 0.79248 0.82462 0.83001 1.90857 1.44231 1.45217 1.65727 1.45304 1.52601 1.12897 1.22999 1.21772 0.90848 0.98113 0.84540 0.90505 1.21895 0.93425 0.94143 0.89972 1.44537 1.01727 1.59745 1.29341 1.19821 0.83211 1.35781 1.07812 0.93897 1.27231 1.03983 1.03823 0.92100 1.71041 1.17701 1.36690 1.33039 0.83363 0.73607 0.73843 0.75707 1.18978 1.18632 1.23363 1.22705 0.87080 0.98208 0.97684 1.22805 0.85296 0.94890 0.91920 0.86579 1.86497 1.46466 1.40141 1.64094 1.84168 1.44052 1.10916 1.12483 0.92747 0.89138 0.92298 0.91935 0.88122 0.91782 0.92301 0.89122 0.92902 0.77511 0.74175 0.95653 0.93552 0.94271 0.92743 0.94434 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.45 71.98 0.61 -0.64 16 2 C 0.00 0.05 0.99 -52.93 -0.05 0.00 16 3 C -0.16 -1.34 7.53 71.98 0.54 -0.80 16 4 C -0.13 -1.31 8.45 71.98 0.61 -0.70 16 5 C 0.07 1.17 5.78 88.46 0.51 1.68 16 6 N -0.49 -9.48 10.49 -190.31 -2.00 -11.48 16 7 C 0.11 2.14 10.93 84.23 0.92 3.06 16 8 C -0.33 -8.00 6.48 23.88 0.15 -7.84 16 9 C 0.60 18.41 7.78 86.45 0.67 19.09 16 10 O -0.58 -23.52 16.71 -4.31 -0.07 -23.59 16 11 N -0.69 -18.27 5.21 -439.93 -2.29 -20.56 16 12 C 0.15 5.34 3.04 46.38 0.14 5.48 16 13 H 0.08 3.21 7.73 -2.39 -0.02 3.19 16 14 C 0.13 5.61 6.93 86.85 0.60 6.21 16 15 N -0.62 -31.13 3.38 -691.97 -2.34 -33.47 16 16 C -0.34 -20.30 10.43 84.03 0.88 -19.42 16 17 H 0.04 2.81 8.06 -2.91 -0.02 2.78 16 18 C -0.08 -4.64 5.45 84.86 0.46 -4.17 16 19 N -0.94 -61.43 13.70 21.65 0.30 -61.14 16 20 Si 1.11 51.89 24.65 68.60 1.69 53.58 16 21 H -0.26 -11.14 6.36 99.48 0.63 -10.51 16 22 H -0.26 -10.71 6.35 99.48 0.63 -10.08 16 23 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 24 C 0.07 2.75 4.61 86.73 0.40 3.15 16 25 C 0.11 3.25 3.94 31.79 0.13 3.37 16 26 H 0.12 2.40 8.00 -2.39 -0.02 2.39 16 27 O -0.56 -14.74 13.39 -148.98 -2.00 -16.74 16 28 S 0.22 4.68 21.39 -56.49 -1.21 3.47 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.58 7.92 -2.39 -0.02 0.56 16 33 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.06 0.57 7.92 -2.39 -0.02 0.55 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.21 2.45 7.15 -2.91 -0.02 2.43 16 39 H 0.42 7.42 7.22 -92.70 -0.67 6.75 16 40 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 43 H 0.06 2.09 4.45 -2.39 -0.01 2.08 16 44 H 0.04 1.67 6.59 -2.39 -0.02 1.66 16 45 H 0.40 6.41 9.12 -74.06 -0.68 5.73 16 Total: -1.00 -83.62 375.70 -1.85 -85.47 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.50 Total: 15.98 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.57 Total: 8.47 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.33 Total: -126.64 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -2.07 Total: -40.33 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.69 Total: 53.58 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.21 Total: 3.47 kcal Total: -83.62 -1.85 -85.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078235249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.915 kcal (2) G-P(sol) polarization free energy of solvation -83.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds