Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99689 * 2 1 4 4 H 1.09001 * 110.92113 * 26.09594 * 3 2 1 5 5 C 1.54914 * 111.00197 * 262.19526 * 3 2 1 6 6 N 1.47420 * 104.83403 * 204.91917 * 5 3 2 7 7 C 1.36940 * 125.64927 * 204.09732 * 6 5 3 8 8 H 1.08003 * 119.99922 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99764 * 0.03605 * 7 6 5 10 10 N 1.31615 * 120.00278 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47111 * 90.00179 * 11 9 7 13 13 H 1.48501 * 109.46923 * 210.00645 * 11 9 7 14 14 H 1.48506 * 109.47109 * 330.00132 * 11 9 7 15 15 C 1.47020 * 108.70320 * 24.12881 * 6 5 3 16 16 C 1.54324 * 107.26947 * 358.94044 * 15 6 5 17 17 H 1.09006 * 110.71822 * 96.17369 * 16 15 6 18 18 N 1.46497 * 110.72079 * 219.26357 * 16 15 6 19 19 C 1.34779 * 120.00563 * 271.16025 * 18 16 15 20 20 O 1.21688 * 119.99394 * 359.97438 * 19 18 16 21 21 C 1.46674 * 120.00572 * 180.02562 * 19 18 16 22 22 S 1.76214 * 126.12930 * 353.98082 * 21 19 18 23 23 C 1.70957 * 90.31460 * 179.97438 * 22 21 19 24 24 N 1.29429 * 110.38723 * 0.34913 * 23 22 21 25 25 C 1.30940 * 117.36896 * 359.72419 * 24 23 22 26 26 C 1.50694 * 122.90742 * 180.02562 * 25 24 23 27 27 C 1.52998 * 109.46876 * 305.46778 * 26 25 24 28 28 C 1.53005 * 109.47142 * 65.46614 * 26 25 24 29 29 H 1.09011 * 109.47056 * 299.99884 * 1 2 3 30 30 H 1.08994 * 109.47493 * 59.99764 * 1 2 3 31 31 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.36555 * 86.08252 * 5 3 2 33 33 H 1.09000 * 110.37073 * 323.76184 * 5 3 2 34 34 H 0.96997 * 119.99811 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.88594 * 239.52517 * 15 6 5 36 36 H 1.09001 * 109.88132 * 118.35613 * 15 6 5 37 37 H 0.97005 * 119.99809 * 91.15698 * 18 16 15 38 38 H 1.07999 * 124.80219 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47672 * 185.46738 * 26 25 24 40 40 H 1.09002 * 109.47324 * 60.00207 * 27 26 25 41 41 H 1.09003 * 109.46961 * 179.97438 * 27 26 25 42 42 H 1.08999 * 109.47138 * 299.99615 * 27 26 25 43 43 H 1.08995 * 109.47090 * 60.00015 * 28 26 25 44 44 H 1.08994 * 109.47131 * 180.02562 * 28 26 25 45 45 H 1.09005 * 109.46882 * 300.00225 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4154 1.7328 -1.4328 6 7 3.4908 2.7229 -1.2415 7 6 3.8429 3.7011 -2.1327 8 1 4.6491 4.3804 -1.8983 9 6 3.1632 3.8198 -3.3373 10 7 2.1802 2.9925 -3.6226 11 14 3.6440 5.1539 -4.5533 12 1 4.6831 4.6311 -5.4763 13 1 2.4498 5.5654 -5.3342 14 1 4.1811 6.3257 -3.8159 15 6 4.1232 2.4855 0.0644 16 6 3.3823 1.3034 0.7241 17 1 3.9119 0.3677 0.5443 18 7 3.2146 1.5338 2.1611 19 6 4.1698 1.1342 3.0238 20 8 5.1715 0.5815 2.6091 21 6 4.0015 1.3645 4.4626 22 16 2.6976 2.2729 5.2239 23 6 3.3709 1.9660 6.7651 24 7 4.4528 1.2645 6.6528 25 6 4.8257 0.9221 5.4453 26 6 6.0629 0.1068 5.1707 27 6 7.2740 0.7854 5.8138 28 6 5.8912 -1.2948 5.7600 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.5685 2.1873 -1.9469 33 1 2.7851 0.8749 -1.9944 34 1 1.7051 3.0757 -4.4641 35 1 4.0315 3.3748 0.6879 36 1 5.1747 2.2336 -0.0734 37 1 2.4159 1.9741 2.4916 38 1 2.9553 2.3131 7.6995 39 1 6.2174 0.0319 4.0944 40 1 7.1196 0.8602 6.8903 41 1 8.1688 0.1954 5.6156 42 1 7.3964 1.7839 5.3940 43 1 5.0284 -1.7783 5.3019 44 1 6.7862 -1.8844 5.5618 45 1 5.7367 -1.2199 6.8364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082214368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -4.723822 kcal Electronic energy + Delta-G solvation = -27701.453958 eV Core-core repulsion = 23847.092204 eV Total energy + Delta-G solvation = -3854.361755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67985 -39.43283 -38.04220 -35.97926 -34.97053 -34.12291 -31.96385 -30.50157 -28.81195 -27.28027 -27.17567 -26.13712 -25.92868 -24.32926 -22.60009 -21.64765 -20.75815 -20.06758 -19.47218 -18.05391 -17.37109 -16.66888 -16.56976 -15.69447 -15.45321 -15.31056 -14.82481 -14.53271 -14.40380 -14.35842 -14.20809 -14.09695 -13.72295 -13.25021 -12.96693 -12.91385 -12.54921 -12.28351 -12.18278 -11.94028 -11.57223 -11.31845 -11.23361 -11.19433 -11.06228 -11.00063 -10.86134 -10.79106 -10.22464 -10.14762 -9.96296 -9.85805 -9.76526 -9.62052 -9.19943 -9.07293 -8.76338 -8.73000 -6.93881 -5.72841 -3.16018 0.05132 0.96401 1.33923 2.29225 3.10168 3.13858 3.37293 3.42412 3.43953 3.90397 4.06673 4.46020 4.62975 4.74791 4.81574 5.12429 5.14266 5.19867 5.34123 5.38349 5.44949 5.55908 5.61525 5.62604 5.63396 5.74952 5.77815 5.80271 5.89518 5.90594 6.01176 6.04634 6.13720 6.18844 6.30355 6.49144 6.62856 6.80082 7.20674 7.34407 7.48768 7.54616 7.68660 7.74977 8.16565 8.24161 9.12637 9.72894 10.34967 11.31018 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.003000 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.551592 B = 9329.564478 C = 9884.105898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.080 0.920 9 C -0.009 4.009 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.107 0.893 18 N -0.707 5.707 19 C 0.597 3.403 20 O -0.517 6.517 21 C -0.286 4.286 22 S 0.156 5.844 23 C 0.032 3.968 24 N -0.468 5.468 25 C 0.152 3.848 26 C -0.052 4.052 27 C -0.136 4.136 28 C -0.136 4.136 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.028 0.972 34 H 0.254 0.746 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.395 0.605 38 H 0.205 0.795 39 H 0.129 0.871 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.000 -4.010 20.566 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.017 3.983 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.031 3.969 17 H 0.124 0.876 18 N -0.357 5.357 19 C 0.382 3.618 20 O -0.395 6.395 21 C -0.410 4.410 22 S 0.411 5.589 23 C -0.264 4.264 24 N -0.181 5.181 25 C 0.014 3.986 26 C -0.072 4.072 27 C -0.194 4.194 28 C -0.194 4.194 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.900 -4.047 20.220 20.708 hybrid contribution 0.161 0.741 -0.402 0.858 sum -1.738 -3.306 19.818 20.167 Atomic orbital electron populations 1.22718 0.81560 1.02014 0.99930 1.87855 1.19245 1.27615 1.95077 1.24047 0.92465 0.83838 1.00128 0.91502 1.22302 0.94691 0.92075 0.89278 1.44299 1.37300 1.35493 1.15699 1.19096 1.13927 1.06147 0.95978 0.90168 1.24802 0.98476 0.99359 0.97856 1.69743 1.24518 1.38710 1.24130 0.86030 0.77342 0.80890 0.80976 1.21484 1.21621 1.20636 1.21604 0.95943 0.93906 0.88209 1.22265 0.97183 1.00533 0.76954 0.87554 1.45921 1.21642 1.60561 1.07541 1.16645 0.83450 0.78625 0.83062 1.90717 1.28449 1.42850 1.77498 1.25587 1.03078 1.12925 0.99404 1.83990 1.25615 1.47990 1.01258 1.28700 0.95317 0.99758 1.02598 1.66039 1.13835 1.13520 1.24721 1.20703 0.96899 0.95871 0.85099 1.20439 0.88819 0.93044 1.04915 1.21726 0.96492 1.00322 1.00832 1.21732 1.01876 0.94924 1.00838 0.94837 0.93450 0.90239 0.86896 0.95411 0.93568 0.95245 0.94620 0.77124 0.77874 0.85388 0.92221 0.92024 0.92902 0.92903 0.91883 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.82 10.51 -35.23 -0.37 -7.19 16 3 C 0.05 1.03 3.17 -24.58 -0.08 0.95 16 4 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 5 C 0.14 3.40 5.62 -2.53 -0.01 3.39 16 6 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -26.20 10.09 55.49 0.56 -25.64 16 11 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.13 2.80 6.99 -3.06 -0.02 2.77 16 16 C 0.13 2.51 3.01 -66.10 -0.20 2.31 16 17 H 0.11 2.15 7.62 -51.93 -0.40 1.76 16 18 N -0.71 -10.84 5.12 -53.34 -0.27 -11.11 16 19 C 0.60 9.42 7.77 -12.85 -0.10 9.32 16 20 O -0.52 -9.53 13.70 5.20 0.07 -9.46 16 21 C -0.29 -3.75 6.48 -37.10 -0.24 -3.99 16 22 S 0.16 1.43 22.37 -107.50 -2.41 -0.97 16 23 C 0.03 0.27 12.22 51.75 0.63 0.90 16 24 N -0.47 -5.37 10.30 -11.53 -0.12 -5.49 16 25 C 0.15 1.96 5.39 -83.90 -0.45 1.51 16 26 C -0.05 -0.65 3.16 -91.77 -0.29 -0.94 16 27 C -0.14 -1.50 9.09 37.16 0.34 -1.16 16 28 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 29 H 0.03 0.40 8.12 -51.92 -0.42 -0.02 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 5.12 7.75 -40.82 -0.32 4.80 16 38 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.90 4.95 -51.93 -0.26 1.64 16 40 H 0.06 0.63 8.07 -51.93 -0.42 0.22 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -31.78 380.63 -8.34 -40.12 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.71 Total: 4.24 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 0.76 Total: 8.86 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.41 Total: -58.00 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.30 Total: -16.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.41 Total: -0.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.78 -8.34 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082214368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.396 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds