Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99689 * 2 1 4 4 H 1.09001 * 110.92113 * 26.09594 * 3 2 1 5 5 C 1.54914 * 111.00197 * 262.19526 * 3 2 1 6 6 N 1.47420 * 104.83403 * 204.91917 * 5 3 2 7 7 C 1.36940 * 125.64927 * 204.09732 * 6 5 3 8 8 H 1.08003 * 119.99922 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99764 * 0.03605 * 7 6 5 10 10 N 1.31615 * 120.00278 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47111 * 90.00179 * 11 9 7 13 13 H 1.48501 * 109.46923 * 210.00645 * 11 9 7 14 14 H 1.48506 * 109.47109 * 330.00132 * 11 9 7 15 15 C 1.47020 * 108.70320 * 24.12881 * 6 5 3 16 16 C 1.54324 * 107.26947 * 358.94044 * 15 6 5 17 17 H 1.09006 * 110.71822 * 96.17369 * 16 15 6 18 18 N 1.46497 * 110.72079 * 219.26357 * 16 15 6 19 19 C 1.34779 * 120.00563 * 271.16025 * 18 16 15 20 20 O 1.21688 * 119.99394 * 359.97438 * 19 18 16 21 21 C 1.46674 * 120.00572 * 180.02562 * 19 18 16 22 22 S 1.76214 * 126.12930 * 353.98082 * 21 19 18 23 23 C 1.70957 * 90.31460 * 179.97438 * 22 21 19 24 24 N 1.29429 * 110.38723 * 0.34913 * 23 22 21 25 25 C 1.30940 * 117.36896 * 359.72419 * 24 23 22 26 26 C 1.50694 * 122.90742 * 180.02562 * 25 24 23 27 27 C 1.52998 * 109.46876 * 305.46778 * 26 25 24 28 28 C 1.53005 * 109.47142 * 65.46614 * 26 25 24 29 29 H 1.09011 * 109.47056 * 299.99884 * 1 2 3 30 30 H 1.08994 * 109.47493 * 59.99764 * 1 2 3 31 31 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.36555 * 86.08252 * 5 3 2 33 33 H 1.09000 * 110.37073 * 323.76184 * 5 3 2 34 34 H 0.96997 * 119.99811 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.88594 * 239.52517 * 15 6 5 36 36 H 1.09001 * 109.88132 * 118.35613 * 15 6 5 37 37 H 0.97005 * 119.99809 * 91.15698 * 18 16 15 38 38 H 1.07999 * 124.80219 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47672 * 185.46738 * 26 25 24 40 40 H 1.09002 * 109.47324 * 60.00207 * 27 26 25 41 41 H 1.09003 * 109.46961 * 179.97438 * 27 26 25 42 42 H 1.08999 * 109.47138 * 299.99615 * 27 26 25 43 43 H 1.08995 * 109.47090 * 60.00015 * 28 26 25 44 44 H 1.08994 * 109.47131 * 180.02562 * 28 26 25 45 45 H 1.09005 * 109.46882 * 300.00225 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4154 1.7328 -1.4328 6 7 3.4908 2.7229 -1.2415 7 6 3.8429 3.7011 -2.1327 8 1 4.6491 4.3804 -1.8983 9 6 3.1632 3.8198 -3.3373 10 7 2.1802 2.9925 -3.6226 11 14 3.6440 5.1539 -4.5533 12 1 4.6831 4.6311 -5.4763 13 1 2.4498 5.5654 -5.3342 14 1 4.1811 6.3257 -3.8159 15 6 4.1232 2.4855 0.0644 16 6 3.3823 1.3034 0.7241 17 1 3.9119 0.3677 0.5443 18 7 3.2146 1.5338 2.1611 19 6 4.1698 1.1342 3.0238 20 8 5.1715 0.5815 2.6091 21 6 4.0015 1.3645 4.4626 22 16 2.6976 2.2729 5.2239 23 6 3.3709 1.9660 6.7651 24 7 4.4528 1.2645 6.6528 25 6 4.8257 0.9221 5.4453 26 6 6.0629 0.1068 5.1707 27 6 7.2740 0.7854 5.8138 28 6 5.8912 -1.2948 5.7600 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.5685 2.1873 -1.9469 33 1 2.7851 0.8749 -1.9944 34 1 1.7051 3.0757 -4.4641 35 1 4.0315 3.3748 0.6879 36 1 5.1747 2.2336 -0.0734 37 1 2.4159 1.9741 2.4916 38 1 2.9553 2.3131 7.6995 39 1 6.2174 0.0319 4.0944 40 1 7.1196 0.8602 6.8903 41 1 8.1688 0.1954 5.6156 42 1 7.3964 1.7839 5.3940 43 1 5.0284 -1.7783 5.3019 44 1 6.7862 -1.8844 5.5618 45 1 5.7367 -1.2199 6.8364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082214368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -27.030494 kcal Electronic energy + Delta-G solvation = -27702.421248 eV Core-core repulsion = 23847.092204 eV Total energy + Delta-G solvation = -3855.329045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69692 -40.70036 -39.46033 -37.55197 -36.00539 -35.54324 -33.79638 -31.64375 -30.45798 -28.88951 -28.04590 -27.53625 -26.93523 -25.98602 -23.67714 -22.76814 -22.38800 -21.70556 -20.60139 -19.11706 -18.95826 -17.99342 -17.90555 -17.15285 -16.83358 -16.42943 -16.19706 -15.84775 -15.75282 -15.49567 -15.30321 -15.20285 -15.05020 -14.72207 -14.54317 -13.97876 -13.81924 -13.75399 -13.36995 -13.19868 -13.07000 -13.00762 -12.74426 -12.58810 -12.38166 -12.15471 -12.13483 -12.04674 -11.91748 -11.87866 -11.61716 -11.08010 -10.81349 -10.73130 -10.66626 -10.54381 -10.20932 -9.87649 -8.98585 -7.81523 -5.28872 -0.79680 0.16808 0.55411 1.37143 1.47578 1.49733 1.58171 1.83895 2.02695 2.44296 2.71395 3.14684 3.29615 3.49699 3.60987 3.79616 3.89975 3.91557 4.01221 4.03615 4.23499 4.30514 4.33607 4.42482 4.52851 4.58573 4.64842 4.78601 4.78798 4.83743 4.86550 4.87158 4.93832 5.01737 5.16720 5.24904 5.30876 5.33315 5.43962 5.52434 5.67149 6.17357 6.25573 6.28836 6.57876 6.97752 7.04020 7.67971 8.30242 9.19964 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.003000 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.551592 B = 9329.564478 C = 9884.105898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.078 3.922 4 H 0.090 0.910 5 C 0.147 3.853 6 N -0.618 5.618 7 C -0.244 4.244 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.946 5.946 11 Si 0.984 3.016 12 H -0.289 1.289 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.086 0.914 18 N -0.698 5.698 19 C 0.597 3.403 20 O -0.553 6.553 21 C -0.329 4.329 22 S 0.210 5.790 23 C 0.052 3.948 24 N -0.491 5.491 25 C 0.154 3.846 26 C -0.060 4.060 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.089 0.911 33 H -0.009 1.009 34 H 0.250 0.750 35 H 0.040 0.960 36 H 0.019 0.981 37 H 0.409 0.591 38 H 0.249 0.751 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 -3.049 23.308 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.108 0.892 5 C 0.021 3.979 6 N -0.346 5.346 7 C -0.373 4.373 8 H 0.100 0.900 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.811 3.189 12 H -0.216 1.216 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.104 0.896 18 N -0.349 5.349 19 C 0.384 3.616 20 O -0.433 6.433 21 C -0.452 4.452 22 S 0.466 5.534 23 C -0.243 4.243 24 N -0.205 5.205 25 C 0.015 3.985 26 C -0.080 4.080 27 C -0.186 4.186 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.245 0.755 38 H 0.265 0.735 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.142 -3.074 23.005 23.421 hybrid contribution 0.498 0.425 -1.170 1.341 sum -2.644 -2.649 21.834 22.153 Atomic orbital electron populations 1.23007 0.79196 1.03998 1.00801 1.87847 1.21839 1.26722 1.94960 1.23617 0.93004 0.84981 0.96617 0.89238 1.22054 0.93323 0.90301 0.92173 1.44536 1.38083 1.35249 1.16694 1.19447 1.14162 1.06781 0.96897 0.89970 1.25637 0.98588 1.01555 0.99493 1.69978 1.25267 1.40036 1.24234 0.85010 0.76772 0.78589 0.78502 1.21622 1.21530 1.19296 1.21657 0.95237 0.95433 0.87135 1.21743 0.96389 0.98295 0.78842 0.89564 1.45660 1.22399 1.60918 1.05885 1.17007 0.82655 0.77631 0.84283 1.90707 1.29786 1.44267 1.78553 1.25333 1.06067 1.16026 0.97824 1.83772 1.23053 1.46133 1.00447 1.29538 0.93683 0.96968 1.04087 1.66102 1.15400 1.15230 1.23767 1.20782 0.96663 0.95328 0.85768 1.20411 0.89835 0.94292 1.03508 1.21667 0.96368 0.99721 1.00882 1.21670 1.01977 0.94040 1.00934 0.92069 0.94394 0.87826 0.89306 0.99140 0.93992 0.94190 0.96247 0.75466 0.73481 0.88079 0.91558 0.90918 0.93990 0.93923 0.90800 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.02 10.51 -148.98 -1.57 -15.58 16 3 C 0.08 2.93 3.17 31.99 0.10 3.03 16 4 H 0.09 2.98 7.70 -2.39 -0.02 2.96 16 5 C 0.15 7.33 5.62 86.86 0.49 7.82 16 6 N -0.62 -32.25 3.39 -691.98 -2.35 -34.60 16 7 C -0.24 -13.71 10.27 84.03 0.86 -12.85 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 10 N -0.95 -55.20 10.09 21.65 0.22 -54.98 16 11 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 15 C 0.13 5.81 6.99 86.73 0.61 6.41 16 16 C 0.15 5.79 3.01 46.18 0.14 5.93 16 17 H 0.09 3.65 7.62 -2.38 -0.02 3.63 16 18 N -0.70 -21.01 5.12 -440.88 -2.26 -23.27 16 19 C 0.60 18.93 7.77 86.45 0.67 19.60 16 20 O -0.55 -21.25 13.70 -4.31 -0.06 -21.31 16 21 C -0.33 -8.27 6.48 23.88 0.15 -8.12 16 22 S 0.21 3.18 22.37 -56.49 -1.26 1.91 16 23 C 0.05 0.68 12.22 130.60 1.60 2.27 16 24 N -0.49 -10.03 10.30 -190.40 -1.96 -11.99 16 25 C 0.15 3.81 5.39 42.09 0.23 4.03 16 26 C -0.06 -1.50 3.16 -11.54 -0.04 -1.54 16 27 C -0.13 -2.77 9.09 71.98 0.65 -2.12 16 28 C -0.13 -2.74 9.18 71.98 0.66 -2.08 16 29 H 0.06 1.27 8.12 -2.38 -0.02 1.25 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 4.86 5.87 -2.39 -0.01 4.84 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.04 1.68 8.03 -2.39 -0.02 1.66 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.41 9.84 7.75 -92.70 -0.72 9.12 16 38 H 0.25 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.10 3.14 4.95 -2.39 -0.01 3.13 16 40 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -72.23 380.63 0.90 -71.33 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.29 Total: 20.01 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.82 Total: 21.42 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -6.35 Total: -124.85 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.63 Total: -36.89 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.26 Total: 1.91 kcal Total: -72.23 0.90 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082214368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.299 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds