Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47065 * 2 1 4 4 N 1.29429 * 124.80965 * 89.97090 * 3 2 1 5 5 C 1.30938 * 117.36598 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.90362 * 180.02562 * 5 4 3 7 7 C 1.35659 * 114.19296 * 0.02562 * 5 4 3 8 8 C 1.46682 * 126.13248 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00165 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88452 * 37.42718 * 11 10 8 13 13 C 1.54912 * 111.00199 * 273.54221 * 11 10 8 14 14 N 1.47419 * 104.82985 * 204.91508 * 13 11 10 15 15 C 1.36942 * 125.64839 * 204.08990 * 14 13 11 16 16 H 1.07992 * 119.99706 * 6.65716 * 15 14 13 17 17 C 1.38812 * 119.99928 * 186.65061 * 15 14 13 18 18 N 1.31619 * 119.99814 * 7.38075 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 187.38332 * 17 15 14 20 20 H 1.48500 * 109.46845 * 265.01760 * 19 17 15 21 21 H 1.48500 * 109.46905 * 145.01852 * 19 17 15 22 22 H 1.48502 * 109.47029 * 25.01940 * 19 17 15 23 23 C 1.47026 * 108.70506 * 24.36095 * 14 13 11 24 24 C 1.54336 * 107.26214 * 358.57986 * 23 14 13 25 25 H 1.09004 * 110.51446 * 96.45669 * 24 23 14 26 26 O 1.42898 * 111.00273 * 219.59851 * 24 23 14 27 27 C 1.42890 * 114.00653 * 263.78707 * 26 24 23 28 28 S 1.70960 * 124.80237 * 270.28955 * 3 2 1 29 29 H 1.08997 * 109.47002 * 300.00424 * 1 2 3 30 30 H 1.09000 * 109.46692 * 60.00723 * 1 2 3 31 31 H 1.08998 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47527 * 239.99535 * 2 1 3 33 33 H 1.09005 * 109.47118 * 119.99136 * 2 1 3 34 34 H 1.09006 * 109.46837 * 269.95891 * 6 5 4 35 35 H 1.08996 * 109.47223 * 29.95832 * 6 5 4 36 36 H 1.09004 * 109.47172 * 149.96505 * 6 5 4 37 37 H 0.97004 * 120.00067 * 359.97438 * 10 8 7 38 38 H 1.09002 * 110.36476 * 86.08061 * 13 11 10 39 39 H 1.08993 * 110.36482 * 323.76006 * 13 11 10 40 40 H 0.96999 * 119.99355 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88022 * 118.12904 * 23 14 13 42 42 H 1.08996 * 109.87722 * 239.29473 * 23 14 13 43 43 H 1.09000 * 109.47241 * 300.00534 * 27 26 24 44 44 H 1.09000 * 109.47232 * 59.99781 * 27 26 24 45 45 H 1.08997 * 109.47565 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2781 2.1176 1.0627 5 6 2.7105 3.3418 0.8930 6 6 3.0356 4.2617 2.0416 7 6 2.8405 3.7105 -0.4060 8 6 3.3017 5.0151 -0.8928 9 8 3.6095 5.8860 -0.1007 10 7 3.3846 5.2492 -2.2175 11 6 3.8447 6.5524 -2.7037 12 1 4.6396 6.9451 -2.0696 13 6 2.6678 7.5547 -2.8039 14 7 3.0919 8.5340 -3.8209 15 6 2.6352 9.8205 -3.9294 16 1 1.9837 10.2279 -3.1706 17 6 3.0100 10.6009 -5.0145 18 7 3.6825 10.0638 -6.0103 19 14 2.5599 12.4133 -5.0613 20 1 1.2967 12.5901 -5.8217 21 1 3.6477 13.1764 -5.7242 22 1 2.3776 12.9140 -3.6751 23 6 4.0814 7.8988 -4.7035 24 6 4.3048 6.4632 -4.1827 25 1 3.6879 5.7556 -4.7366 26 8 5.6842 6.0985 -4.2621 27 6 6.0234 5.3593 -5.4370 28 16 2.3509 2.3431 -1.4038 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.1451 4.8263 2.3182 35 1 3.3720 3.6728 2.8948 36 1 3.8248 4.9516 1.7424 37 1 3.1396 4.5548 -2.8490 38 1 2.5074 8.0484 -1.8455 39 1 1.7604 7.0433 -3.1247 40 1 3.9440 10.6090 -6.7687 41 1 3.7025 7.8700 -5.7251 42 1 5.0189 8.4537 -4.6691 43 1 5.4444 4.4362 -5.4652 44 1 5.7974 5.9569 -6.3201 45 1 7.0869 5.1213 -5.4222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082231415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -11.286792 kcal Electronic energy + Delta-G solvation = -27294.303752 eV Core-core repulsion = 23439.657406 eV Total energy + Delta-G solvation = -3854.646347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52947 -39.44528 -38.08705 -35.95465 -34.61514 -34.15659 -31.87742 -31.05566 -29.21256 -28.33965 -26.90425 -26.15378 -25.78095 -24.29937 -22.29335 -22.00617 -20.64886 -20.21184 -19.50309 -18.11984 -17.38533 -16.64057 -16.47201 -15.72777 -15.55005 -15.21899 -14.82129 -14.62134 -14.44502 -14.26574 -14.24462 -13.85840 -13.66668 -13.28541 -13.16995 -12.86359 -12.62453 -12.31836 -12.20877 -12.06470 -11.92116 -11.63812 -11.61302 -11.51331 -11.24643 -11.04711 -10.83185 -10.79234 -10.21500 -10.13403 -9.99573 -9.82999 -9.78062 -9.71115 -9.19033 -8.97058 -8.79158 -8.63094 -6.89895 -5.74896 -3.11473 0.05066 0.93641 1.34879 2.27997 3.11997 3.16879 3.39713 3.45539 3.48164 3.67338 4.07745 4.45745 4.49550 4.69120 4.74309 4.74570 4.93994 5.08908 5.14770 5.33595 5.36372 5.44639 5.47133 5.53746 5.59833 5.60553 5.65401 5.67125 5.74492 5.77739 5.81204 5.87940 5.99563 6.09479 6.24393 6.46567 6.60225 6.78192 7.17604 7.37388 7.48282 7.55301 7.69607 7.77397 8.16694 8.22300 9.14810 9.75604 10.38648 11.35449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002763 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.722508 B =10133.161525 C =10751.781979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.064 3.936 4 N -0.476 5.476 5 C 0.148 3.852 6 C -0.090 4.090 7 C -0.292 4.292 8 C 0.597 3.403 9 O -0.517 6.517 10 N -0.709 5.709 11 C 0.134 3.866 12 H 0.108 0.892 13 C 0.131 3.869 14 N -0.598 5.598 15 C -0.228 4.228 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.161 3.839 24 C 0.057 3.943 25 H 0.064 0.936 26 O -0.378 6.378 27 C 0.034 3.966 28 S 0.154 5.846 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.393 0.607 38 H 0.053 0.947 39 H 0.023 0.977 40 H 0.253 0.747 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.046 0.954 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -22.515 7.627 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.212 4.212 4 N -0.191 5.191 5 C 0.011 3.989 6 C -0.149 4.149 7 C -0.416 4.416 8 C 0.382 3.618 9 O -0.395 6.395 10 N -0.359 5.359 11 C 0.029 3.971 12 H 0.126 0.874 13 C 0.003 3.997 14 N -0.326 5.326 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.035 3.965 24 C -0.002 4.002 25 H 0.082 0.918 26 O -0.296 6.296 27 C -0.063 4.063 28 S 0.412 5.588 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.227 0.773 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.201 -22.099 7.565 23.461 hybrid contribution -0.317 0.937 -0.115 0.996 sum -2.518 -21.162 7.449 22.576 Atomic orbital electron populations 1.21790 0.93105 1.02816 1.02965 1.20312 0.97002 0.87138 1.04619 1.27400 1.00892 1.01749 0.91137 1.66074 1.15826 1.05938 1.31249 1.20681 0.94129 0.90371 0.93754 1.20683 1.03868 0.96983 0.93347 1.25527 1.18286 1.00649 0.97150 1.16621 0.77771 0.84769 0.82690 1.90805 1.49308 1.44658 1.54700 1.45852 1.67638 1.16476 1.05967 1.22458 0.98101 0.81921 0.94622 0.87447 1.21820 0.93370 0.90330 0.94167 1.44253 1.47261 1.09616 1.31472 1.19072 1.25267 0.86039 1.05238 0.90156 1.24820 1.00650 0.98719 0.96144 1.69920 1.43696 1.34484 1.08741 0.86069 0.77426 0.84521 0.77575 1.21617 1.21578 1.20501 1.21614 0.93944 0.86124 0.94773 1.23834 0.81969 0.99633 0.94772 0.91822 1.87902 1.25775 1.74239 1.41733 1.22724 1.00596 0.94440 0.88564 1.83829 1.58804 1.04522 1.11676 0.91785 0.92170 0.91121 0.89305 0.88431 0.90004 0.90864 0.87938 0.77320 0.92884 0.95975 0.93668 0.91555 0.93431 0.94798 0.93524 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.90 37.16 0.37 -0.46 16 2 C -0.05 -0.31 6.51 -27.88 -0.18 -0.49 16 3 C 0.06 0.63 6.64 -13.29 -0.09 0.54 16 4 N -0.48 -5.86 10.50 -7.70 -0.08 -5.94 16 5 C 0.15 1.98 6.79 -83.89 -0.57 1.41 16 6 C -0.09 -1.11 9.69 36.01 0.35 -0.76 16 7 C -0.29 -3.96 6.48 -37.10 -0.24 -4.20 16 8 C 0.60 9.60 7.78 -12.85 -0.10 9.50 16 9 O -0.52 -9.76 14.01 5.20 0.07 -9.68 16 10 N -0.71 -10.96 5.23 -53.03 -0.28 -11.24 16 11 C 0.13 2.52 3.04 -65.78 -0.20 2.32 16 12 H 0.11 2.26 7.73 -51.93 -0.40 1.86 16 13 C 0.13 2.81 6.93 -2.53 -0.02 2.79 16 14 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 15 C -0.23 -6.39 10.26 -15.06 -0.15 -6.55 16 16 H 0.08 2.19 7.84 -52.49 -0.41 1.77 16 17 C -0.01 -0.20 5.45 -17.43 -0.09 -0.29 16 18 N -0.92 -26.77 10.48 55.49 0.58 -26.19 16 19 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.16 3.88 5.21 -3.06 -0.02 3.86 16 24 C 0.06 1.07 3.05 -24.89 -0.08 0.99 16 25 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 26 O -0.38 -6.86 10.44 -35.23 -0.37 -7.22 16 27 C 0.03 0.46 10.85 101.05 1.10 1.56 16 28 S 0.15 1.53 22.31 -107.50 -2.40 -0.87 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.42 6.01 -51.93 -0.31 1.10 16 37 H 0.39 5.07 7.70 -40.82 -0.31 4.76 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.74 6.99 -51.93 -0.36 1.38 16 42 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 43 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -32.90 383.58 -9.03 -41.93 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.81 Total: 2.03 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 0.07 Total: 10.23 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.35 Total: -59.33 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.30 Total: -16.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.40 Total: -0.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.90 -9.03 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082231415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds