Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47065 * 2 1 4 4 N 1.29429 * 124.80965 * 89.97090 * 3 2 1 5 5 C 1.30938 * 117.36598 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.90362 * 180.02562 * 5 4 3 7 7 C 1.35659 * 114.19296 * 0.02562 * 5 4 3 8 8 C 1.46682 * 126.13248 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00165 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88452 * 37.42718 * 11 10 8 13 13 C 1.54912 * 111.00199 * 273.54221 * 11 10 8 14 14 N 1.47419 * 104.82985 * 204.91508 * 13 11 10 15 15 C 1.36942 * 125.64839 * 204.08990 * 14 13 11 16 16 H 1.07992 * 119.99706 * 6.65716 * 15 14 13 17 17 C 1.38812 * 119.99928 * 186.65061 * 15 14 13 18 18 N 1.31619 * 119.99814 * 7.38075 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 187.38332 * 17 15 14 20 20 H 1.48500 * 109.46845 * 265.01760 * 19 17 15 21 21 H 1.48500 * 109.46905 * 145.01852 * 19 17 15 22 22 H 1.48502 * 109.47029 * 25.01940 * 19 17 15 23 23 C 1.47026 * 108.70506 * 24.36095 * 14 13 11 24 24 C 1.54336 * 107.26214 * 358.57986 * 23 14 13 25 25 H 1.09004 * 110.51446 * 96.45669 * 24 23 14 26 26 O 1.42898 * 111.00273 * 219.59851 * 24 23 14 27 27 C 1.42890 * 114.00653 * 263.78707 * 26 24 23 28 28 S 1.70960 * 124.80237 * 270.28955 * 3 2 1 29 29 H 1.08997 * 109.47002 * 300.00424 * 1 2 3 30 30 H 1.09000 * 109.46692 * 60.00723 * 1 2 3 31 31 H 1.08998 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47527 * 239.99535 * 2 1 3 33 33 H 1.09005 * 109.47118 * 119.99136 * 2 1 3 34 34 H 1.09006 * 109.46837 * 269.95891 * 6 5 4 35 35 H 1.08996 * 109.47223 * 29.95832 * 6 5 4 36 36 H 1.09004 * 109.47172 * 149.96505 * 6 5 4 37 37 H 0.97004 * 120.00067 * 359.97438 * 10 8 7 38 38 H 1.09002 * 110.36476 * 86.08061 * 13 11 10 39 39 H 1.08993 * 110.36482 * 323.76006 * 13 11 10 40 40 H 0.96999 * 119.99355 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88022 * 118.12904 * 23 14 13 42 42 H 1.08996 * 109.87722 * 239.29473 * 23 14 13 43 43 H 1.09000 * 109.47241 * 300.00534 * 27 26 24 44 44 H 1.09000 * 109.47232 * 59.99781 * 27 26 24 45 45 H 1.08997 * 109.47565 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2781 2.1176 1.0627 5 6 2.7105 3.3418 0.8930 6 6 3.0356 4.2617 2.0416 7 6 2.8405 3.7105 -0.4060 8 6 3.3017 5.0151 -0.8928 9 8 3.6095 5.8860 -0.1007 10 7 3.3846 5.2492 -2.2175 11 6 3.8447 6.5524 -2.7037 12 1 4.6396 6.9451 -2.0696 13 6 2.6678 7.5547 -2.8039 14 7 3.0919 8.5340 -3.8209 15 6 2.6352 9.8205 -3.9294 16 1 1.9837 10.2279 -3.1706 17 6 3.0100 10.6009 -5.0145 18 7 3.6825 10.0638 -6.0103 19 14 2.5599 12.4133 -5.0613 20 1 1.2967 12.5901 -5.8217 21 1 3.6477 13.1764 -5.7242 22 1 2.3776 12.9140 -3.6751 23 6 4.0814 7.8988 -4.7035 24 6 4.3048 6.4632 -4.1827 25 1 3.6879 5.7556 -4.7366 26 8 5.6842 6.0985 -4.2621 27 6 6.0234 5.3593 -5.4370 28 16 2.3509 2.3431 -1.4038 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.1451 4.8263 2.3182 35 1 3.3720 3.6728 2.8948 36 1 3.8248 4.9516 1.7424 37 1 3.1396 4.5548 -2.8490 38 1 2.5074 8.0484 -1.8455 39 1 1.7604 7.0433 -3.1247 40 1 3.9440 10.6090 -6.7687 41 1 3.7025 7.8700 -5.7251 42 1 5.0189 8.4537 -4.6691 43 1 5.4444 4.4362 -5.4652 44 1 5.7974 5.9569 -6.3201 45 1 7.0869 5.1213 -5.4222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082231415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -34.610891 kcal Electronic energy + Delta-G solvation = -27295.315161 eV Core-core repulsion = 23439.657406 eV Total energy + Delta-G solvation = -3855.657755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59706 -40.71937 -39.52091 -37.54443 -35.75513 -35.24297 -33.77643 -31.91578 -30.82530 -29.72338 -28.46154 -27.53254 -26.47770 -26.05697 -23.43470 -22.84823 -22.29460 -21.86170 -20.67778 -19.12181 -19.05241 -18.01788 -17.86689 -17.19390 -16.72222 -16.52229 -16.11425 -15.84238 -15.68272 -15.56786 -15.36629 -15.07174 -14.83157 -14.59510 -14.42439 -14.16487 -13.93433 -13.64054 -13.53494 -13.27206 -12.97798 -12.93564 -12.78329 -12.62509 -12.56828 -12.41737 -12.35236 -12.10624 -12.06805 -11.88700 -11.66806 -11.26341 -10.81460 -10.80577 -10.67505 -10.57059 -10.24063 -9.78301 -8.98222 -7.88726 -5.28630 -0.86347 0.09054 0.47292 1.30396 1.45150 1.47393 1.56848 1.82223 2.00106 2.44890 2.72400 2.91574 3.28912 3.44566 3.59208 3.77179 3.80456 3.86501 3.99080 4.08109 4.23514 4.29323 4.32429 4.39574 4.54769 4.56957 4.63645 4.67032 4.76683 4.79525 4.85830 4.86448 4.89804 5.00132 5.06740 5.20072 5.27814 5.33220 5.36199 5.42300 5.62238 6.12059 6.25631 6.26819 6.54790 6.97303 7.02735 7.67163 8.29980 9.19563 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002763 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.722508 B =10133.161525 C =10751.781979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.072 3.928 4 N -0.499 5.499 5 C 0.146 3.854 6 C -0.088 4.088 7 C -0.330 4.330 8 C 0.597 3.403 9 O -0.554 6.554 10 N -0.698 5.698 11 C 0.153 3.847 12 H 0.082 0.918 13 C 0.132 3.868 14 N -0.619 5.619 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.060 4.060 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.272 1.272 23 C 0.171 3.829 24 C 0.078 3.922 25 H 0.096 0.904 26 O -0.396 6.396 27 C 0.024 3.976 28 S 0.211 5.789 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.409 0.591 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.250 0.750 41 H 0.041 0.959 42 H 0.005 0.995 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -25.447 7.408 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.203 4.203 4 N -0.215 5.215 5 C 0.007 3.993 6 C -0.147 4.147 7 C -0.454 4.454 8 C 0.384 3.616 9 O -0.433 6.433 10 N -0.349 5.349 11 C 0.046 3.954 12 H 0.100 0.900 13 C 0.005 3.995 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.808 3.192 20 H -0.208 1.208 21 H -0.218 1.218 22 H -0.197 1.197 23 C 0.045 3.955 24 C 0.019 3.981 25 H 0.113 0.887 26 O -0.315 6.315 27 C -0.071 4.071 28 S 0.470 5.530 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.245 0.755 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.135 -25.091 7.335 26.328 hybrid contribution -0.047 1.712 -0.031 1.713 sum -3.182 -23.378 7.304 24.699 Atomic orbital electron populations 1.21799 0.92406 1.04099 1.02217 1.20589 0.97396 0.84900 1.06382 1.28189 0.98450 1.02858 0.90786 1.66156 1.17315 1.05663 1.32324 1.20842 0.93581 0.90947 0.93891 1.20627 1.03294 0.96899 0.93901 1.25282 1.20777 1.01007 0.98346 1.16945 0.76888 0.85470 0.82268 1.90788 1.50788 1.46265 1.55508 1.45571 1.67590 1.15439 1.06321 1.21908 0.96166 0.82884 0.94410 0.89954 1.21893 0.94921 0.90235 0.92453 1.44501 1.47615 1.09897 1.32647 1.19415 1.25369 0.87533 1.05335 0.90121 1.25657 1.00938 1.02813 0.95921 1.70120 1.44574 1.35636 1.09059 0.85051 0.77053 0.79386 0.77754 1.20825 1.21819 1.19689 1.21361 0.91452 0.88907 0.93806 1.23464 0.83335 0.96902 0.94416 0.88660 1.87887 1.24977 1.74948 1.43682 1.23023 1.02600 0.94953 0.86554 1.83537 1.57462 1.01922 1.10062 0.93314 0.92153 0.88884 0.86561 0.87645 0.89877 0.89370 0.89842 0.75477 0.94257 0.94524 0.94091 0.94079 0.97626 0.91685 0.94429 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 71.98 0.71 -0.45 16 2 C -0.05 -0.46 6.51 29.85 0.19 -0.27 16 3 C 0.07 1.22 6.64 88.46 0.59 1.81 16 4 N -0.50 -11.44 10.50 -178.29 -1.87 -13.31 16 5 C 0.15 3.80 6.79 42.09 0.29 4.08 16 6 C -0.09 -2.20 9.69 71.24 0.69 -1.51 16 7 C -0.33 -8.62 6.48 23.88 0.15 -8.46 16 8 C 0.60 19.14 7.78 86.45 0.67 19.81 16 9 O -0.55 -21.56 14.01 -4.30 -0.06 -21.62 16 10 N -0.70 -20.91 5.23 -439.91 -2.30 -23.21 16 11 C 0.15 5.78 3.04 46.38 0.14 5.92 16 12 H 0.08 3.58 7.73 -2.39 -0.02 3.56 16 13 C 0.13 5.77 6.93 86.86 0.60 6.37 16 14 N -0.62 -32.79 3.39 -691.98 -2.35 -35.14 16 15 C -0.25 -14.25 10.26 84.03 0.86 -13.39 16 16 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 17 C -0.06 -3.43 5.45 84.86 0.46 -2.97 16 18 N -0.95 -56.61 10.48 21.65 0.23 -56.38 16 19 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.17 8.50 5.21 86.73 0.45 8.95 16 24 C 0.08 2.91 3.05 31.79 0.10 3.00 16 25 H 0.10 2.95 7.68 -2.39 -0.02 2.94 16 26 O -0.40 -14.08 10.44 -148.98 -1.56 -15.64 16 27 C 0.02 0.63 10.85 113.37 1.23 1.86 16 28 S 0.21 3.59 22.31 -56.49 -1.26 2.33 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.11 0.85 8.14 -2.38 -0.02 0.84 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.41 6.01 -2.38 -0.01 2.40 16 37 H 0.41 9.58 7.70 -92.71 -0.71 8.87 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.04 2.23 6.99 -2.39 -0.02 2.22 16 42 H 0.01 0.31 7.83 -2.39 -0.02 0.30 16 43 H 0.06 1.27 8.11 -2.39 -0.02 1.26 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -74.63 383.58 0.30 -74.33 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.29 Total: 15.57 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 7.14 Total: 24.76 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.29 Total: -128.04 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.62 Total: -37.26 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.26 Total: 2.33 kcal Total: -74.63 0.30 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082231415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.720 kcal (2) G-P(sol) polarization free energy of solvation -74.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds