Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00389 * 2 1 4 4 H 1.09004 * 110.63980 * 26.85513 * 3 2 1 5 5 C 1.54338 * 111.00183 * 263.78173 * 3 2 1 6 6 N 1.47020 * 107.26214 * 219.60035 * 5 3 2 7 7 C 1.36939 * 125.64331 * 178.84812 * 6 5 3 8 8 H 1.08005 * 119.99396 * 184.88822 * 7 6 5 9 9 C 1.38804 * 120.00446 * 4.89343 * 7 6 5 10 10 N 1.31626 * 119.99758 * 5.33332 * 9 7 6 11 11 Si 1.86800 * 120.00243 * 185.33530 * 9 7 6 12 12 H 1.48500 * 109.47046 * 264.99817 * 11 9 7 13 13 H 1.48501 * 109.47149 * 145.00492 * 11 9 7 14 14 H 1.48491 * 109.47019 * 24.99873 * 11 9 7 15 15 C 1.47425 * 108.70793 * 358.58652 * 6 5 3 16 16 C 1.54915 * 104.82914 * 24.35344 * 15 6 5 17 17 H 1.08999 * 111.00146 * 81.10318 * 16 15 6 18 18 N 1.46497 * 111.00082 * 204.91743 * 16 15 6 19 19 C 1.34776 * 120.00242 * 273.54186 * 18 16 15 20 20 O 1.21633 * 119.99483 * 0.02562 * 19 18 16 21 21 C 1.47261 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.33561 * 123.14000 * 354.20399 * 21 19 18 23 23 C 1.28653 * 115.76754 * 179.82625 * 22 21 19 24 24 S 1.70767 * 110.55651 * 0.43050 * 23 22 21 25 25 C 1.35205 * 123.14294 * 174.50084 * 21 19 18 26 26 C 1.50696 * 125.58667 * 359.92608 * 25 21 19 27 27 C 1.52996 * 109.47199 * 125.33339 * 26 25 21 28 28 C 1.53003 * 109.47114 * 245.33239 * 26 25 21 29 29 H 1.09011 * 109.47023 * 59.99608 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46858 * 300.00446 * 1 2 3 32 32 H 1.09003 * 109.98743 * 100.12745 * 5 3 2 33 33 H 1.09003 * 109.78017 * 338.95631 * 5 3 2 34 34 H 0.97004 * 119.99834 * 180.02562 * 10 9 7 35 35 H 1.08993 * 110.37055 * 143.19248 * 15 6 5 36 36 H 1.08998 * 110.36507 * 265.52301 * 15 6 5 37 37 H 0.96999 * 120.00073 * 93.55326 * 18 16 15 38 38 H 1.08000 * 124.71809 * 180.18915 * 23 22 21 39 39 H 1.09000 * 109.47145 * 5.33134 * 26 25 21 40 40 H 1.09000 * 109.47240 * 59.99853 * 27 26 25 41 41 H 1.09001 * 109.47241 * 180.02562 * 27 26 25 42 42 H 1.09002 * 109.47337 * 300.00160 * 27 26 25 43 43 H 1.08999 * 109.46929 * 60.00213 * 28 26 25 44 44 H 1.09001 * 109.46866 * 179.97438 * 28 26 25 45 45 H 1.09000 * 109.47029 * 299.99966 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4498 -1.3549 7 6 4.3518 2.9801 -2.4156 8 1 5.3315 3.4093 -2.2656 9 6 3.7869 2.9662 -3.6834 10 7 2.5527 2.5399 -3.8493 11 14 4.7782 3.5524 -5.1542 12 1 4.4718 4.9809 -5.4201 13 1 4.4235 2.7401 -6.3457 14 1 6.2271 3.4022 -4.8661 15 6 4.0973 2.4944 0.0545 16 6 3.3817 1.2956 0.7256 17 1 3.9175 0.3653 0.5369 18 7 3.2165 1.5208 2.1637 19 6 4.2042 1.1836 3.0165 20 8 5.2329 0.6927 2.5920 21 6 4.0380 1.4095 4.4622 22 7 2.9862 2.0447 4.9857 23 6 2.9835 2.1602 6.2671 24 16 4.3847 1.4493 6.9360 25 6 4.9386 0.9985 5.3830 26 6 6.2203 0.2626 5.0884 27 6 7.3969 1.0197 5.7076 28 6 6.1490 -1.1447 5.6846 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6129 2.4181 -1.8232 33 1 2.4707 0.8723 -2.0759 34 1 2.1580 2.5298 -4.7353 35 1 5.1787 2.3785 0.1248 36 1 3.7843 3.4304 0.5171 37 1 2.3963 1.9125 2.5022 38 1 2.2055 2.6431 6.8395 39 1 6.3600 0.1935 4.0096 40 1 7.2573 1.0888 6.7864 41 1 8.3240 0.4877 5.4941 42 1 7.4477 2.0223 5.2829 43 1 5.3108 -1.6840 5.2435 44 1 7.0760 -1.6770 5.4712 45 1 6.0094 -1.0756 6.7634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082322274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -9.048023 kcal Electronic energy + Delta-G solvation = -27731.823758 eV Core-core repulsion = 23877.274492 eV Total energy + Delta-G solvation = -3854.549266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69986 -39.00376 -37.88046 -36.09147 -35.73583 -33.97028 -31.76226 -30.05206 -28.77657 -27.37387 -27.33591 -26.10292 -25.75545 -24.21931 -22.63701 -21.64953 -20.51974 -20.29411 -19.60729 -18.17822 -17.27644 -16.51191 -16.46572 -15.75007 -15.48618 -15.34054 -14.77060 -14.51349 -14.33752 -14.23035 -14.02861 -13.97488 -13.70758 -13.25897 -13.20660 -12.79456 -12.45969 -12.28875 -12.20888 -11.85127 -11.69697 -11.57502 -11.44618 -11.27890 -11.17015 -10.99579 -10.79096 -10.72913 -10.14960 -10.04968 -9.93671 -9.77410 -9.66365 -9.57907 -9.20330 -9.04596 -8.72354 -8.56746 -6.85782 -5.71085 -3.06848 0.34959 1.00586 1.42148 1.89941 3.33522 3.40876 3.42294 3.47606 3.50234 3.96726 4.15382 4.45086 4.53899 4.67332 4.83752 4.94379 5.12038 5.19303 5.33813 5.37586 5.43068 5.49775 5.59040 5.61172 5.65571 5.67243 5.69400 5.76046 5.88011 5.88158 5.94299 6.02966 6.07053 6.15337 6.27622 6.59898 6.65834 6.87802 7.17904 7.26144 7.53117 7.72048 7.76190 7.84454 8.21975 8.36370 9.19190 9.79677 10.43214 11.39760 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002943 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.249940 B = 9513.404421 C =10448.020434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.057 3.943 4 H 0.064 0.936 5 C 0.164 3.836 6 N -0.599 5.599 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.106 0.894 18 N -0.695 5.695 19 C 0.595 3.405 20 O -0.528 6.528 21 C -0.002 4.002 22 N -0.437 5.437 23 C -0.008 4.008 24 S 0.192 5.808 25 C -0.166 4.166 26 C -0.054 4.054 27 C -0.143 4.143 28 C -0.141 4.141 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.405 0.595 38 H 0.203 0.797 39 H 0.138 0.862 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -3.913 24.572 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.002 4.002 4 H 0.082 0.918 5 C 0.038 3.962 6 N -0.327 5.327 7 C -0.355 4.355 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.569 5.569 11 Si 0.744 3.256 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.004 3.996 16 C 0.027 3.973 17 H 0.123 0.877 18 N -0.345 5.345 19 C 0.379 3.621 20 O -0.405 6.405 21 C -0.136 4.136 22 N -0.151 5.151 23 C -0.308 4.308 24 S 0.448 5.552 25 C -0.290 4.290 26 C -0.074 4.074 27 C -0.201 4.201 28 C -0.199 4.199 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.240 0.760 38 H 0.220 0.780 39 H 0.156 0.844 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.646 -4.267 24.693 25.067 hybrid contribution -0.420 0.753 -1.452 1.688 sum 0.226 -3.514 23.241 23.507 Atomic orbital electron populations 1.22716 0.81681 1.02028 0.99847 1.87894 1.19152 1.27582 1.95048 1.23833 0.92861 0.84079 0.99429 0.91767 1.21584 0.88881 0.96836 0.88897 1.44256 1.21655 1.66101 1.00695 1.19084 0.98699 1.32146 0.85619 0.90164 1.24814 0.96491 1.01404 0.97653 1.69935 1.12754 1.52630 1.21601 0.86064 0.79230 0.77947 0.82324 1.21651 1.21617 1.20534 1.21819 0.97846 0.93754 0.86217 1.22448 0.96693 1.01008 0.77145 0.87651 1.45777 1.19046 1.62563 1.07065 1.16987 0.83665 0.78143 0.83332 1.90672 1.27701 1.45039 1.77120 1.20410 0.92461 1.04432 0.96321 1.66950 1.22847 1.14419 1.10842 1.28295 1.03063 1.05827 0.93605 1.82761 1.15502 1.49154 1.07779 1.25681 1.02633 1.04175 0.96498 1.20337 0.87635 0.93246 1.06186 1.21900 0.97539 1.00735 0.99909 1.21870 1.02712 0.95266 1.00030 0.93584 0.90262 0.94759 0.92008 0.93153 0.93705 0.92994 0.95922 0.75987 0.78014 0.84439 0.92936 0.91424 0.92200 0.92311 0.91460 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.18 10.45 -35.23 -0.37 -7.54 16 3 C 0.06 1.12 3.05 -24.89 -0.08 1.05 16 4 H 0.06 1.14 7.68 -51.93 -0.40 0.75 16 5 C 0.16 4.05 5.19 -3.06 -0.02 4.03 16 6 N -0.60 -15.76 3.39 -170.06 -0.58 -16.34 16 7 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 9 C -0.01 -0.21 5.46 -17.43 -0.10 -0.31 16 10 N -0.92 -27.18 10.41 55.49 0.58 -26.60 16 11 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.13 2.91 6.93 -2.53 -0.02 2.90 16 16 C 0.13 2.60 3.04 -65.78 -0.20 2.40 16 17 H 0.11 2.28 7.73 -51.93 -0.40 1.88 16 18 N -0.70 -11.60 5.23 -52.85 -0.28 -11.88 16 19 C 0.60 10.01 7.79 -12.59 -0.10 9.91 16 20 O -0.53 -10.02 13.61 5.25 0.07 -9.95 16 21 C 0.00 -0.03 6.70 -84.53 -0.57 -0.60 16 22 N -0.44 -5.42 10.14 -12.36 -0.13 -5.55 16 23 C -0.01 -0.07 12.17 51.43 0.63 0.55 16 24 S 0.19 1.52 22.44 -107.50 -2.41 -0.89 16 25 C -0.17 -1.93 5.03 -35.39 -0.18 -2.11 16 26 C -0.05 -0.60 3.12 -91.77 -0.29 -0.89 16 27 C -0.14 -1.30 9.05 37.16 0.34 -0.97 16 28 C -0.14 -1.30 9.16 37.16 0.34 -0.96 16 29 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 32 H 0.06 1.66 7.11 -51.93 -0.37 1.29 16 33 H 0.05 1.40 7.71 -51.93 -0.40 1.00 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 6.08 8.05 -40.82 -0.33 5.75 16 38 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 1.97 4.94 -51.93 -0.26 1.71 16 40 H 0.05 0.40 7.84 -51.93 -0.41 -0.01 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -33.02 380.98 -8.44 -41.46 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.76 Total: 4.20 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 0.71 Total: 9.97 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.40 Total: -60.36 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.30 Total: -17.49 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.41 Total: -0.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.02 -8.44 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082322274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.412 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds