Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00389 * 2 1 4 4 H 1.09004 * 110.63980 * 26.85513 * 3 2 1 5 5 C 1.54338 * 111.00183 * 263.78173 * 3 2 1 6 6 N 1.47020 * 107.26214 * 219.60035 * 5 3 2 7 7 C 1.36939 * 125.64331 * 178.84812 * 6 5 3 8 8 H 1.08005 * 119.99396 * 184.88822 * 7 6 5 9 9 C 1.38804 * 120.00446 * 4.89343 * 7 6 5 10 10 N 1.31626 * 119.99758 * 5.33332 * 9 7 6 11 11 Si 1.86800 * 120.00243 * 185.33530 * 9 7 6 12 12 H 1.48500 * 109.47046 * 264.99817 * 11 9 7 13 13 H 1.48501 * 109.47149 * 145.00492 * 11 9 7 14 14 H 1.48491 * 109.47019 * 24.99873 * 11 9 7 15 15 C 1.47425 * 108.70793 * 358.58652 * 6 5 3 16 16 C 1.54915 * 104.82914 * 24.35344 * 15 6 5 17 17 H 1.08999 * 111.00146 * 81.10318 * 16 15 6 18 18 N 1.46497 * 111.00082 * 204.91743 * 16 15 6 19 19 C 1.34776 * 120.00242 * 273.54186 * 18 16 15 20 20 O 1.21633 * 119.99483 * 0.02562 * 19 18 16 21 21 C 1.47261 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.33561 * 123.14000 * 354.20399 * 21 19 18 23 23 C 1.28653 * 115.76754 * 179.82625 * 22 21 19 24 24 S 1.70767 * 110.55651 * 0.43050 * 23 22 21 25 25 C 1.35205 * 123.14294 * 174.50084 * 21 19 18 26 26 C 1.50696 * 125.58667 * 359.92608 * 25 21 19 27 27 C 1.52996 * 109.47199 * 125.33339 * 26 25 21 28 28 C 1.53003 * 109.47114 * 245.33239 * 26 25 21 29 29 H 1.09011 * 109.47023 * 59.99608 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46858 * 300.00446 * 1 2 3 32 32 H 1.09003 * 109.98743 * 100.12745 * 5 3 2 33 33 H 1.09003 * 109.78017 * 338.95631 * 5 3 2 34 34 H 0.97004 * 119.99834 * 180.02562 * 10 9 7 35 35 H 1.08993 * 110.37055 * 143.19248 * 15 6 5 36 36 H 1.08998 * 110.36507 * 265.52301 * 15 6 5 37 37 H 0.96999 * 120.00073 * 93.55326 * 18 16 15 38 38 H 1.08000 * 124.71809 * 180.18915 * 23 22 21 39 39 H 1.09000 * 109.47145 * 5.33134 * 26 25 21 40 40 H 1.09000 * 109.47240 * 59.99853 * 27 26 25 41 41 H 1.09001 * 109.47241 * 180.02562 * 27 26 25 42 42 H 1.09002 * 109.47337 * 300.00160 * 27 26 25 43 43 H 1.08999 * 109.46929 * 60.00213 * 28 26 25 44 44 H 1.09001 * 109.46866 * 179.97438 * 28 26 25 45 45 H 1.09000 * 109.47029 * 299.99966 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4498 -1.3549 7 6 4.3518 2.9801 -2.4156 8 1 5.3315 3.4093 -2.2656 9 6 3.7869 2.9662 -3.6834 10 7 2.5527 2.5399 -3.8493 11 14 4.7782 3.5524 -5.1542 12 1 4.4718 4.9809 -5.4201 13 1 4.4235 2.7401 -6.3457 14 1 6.2271 3.4022 -4.8661 15 6 4.0973 2.4944 0.0545 16 6 3.3817 1.2956 0.7256 17 1 3.9175 0.3653 0.5369 18 7 3.2165 1.5208 2.1637 19 6 4.2042 1.1836 3.0165 20 8 5.2329 0.6927 2.5920 21 6 4.0380 1.4095 4.4622 22 7 2.9862 2.0447 4.9857 23 6 2.9835 2.1602 6.2671 24 16 4.3847 1.4493 6.9360 25 6 4.9386 0.9985 5.3830 26 6 6.2203 0.2626 5.0884 27 6 7.3969 1.0197 5.7076 28 6 6.1490 -1.1447 5.6846 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6129 2.4181 -1.8232 33 1 2.4707 0.8723 -2.0759 34 1 2.1580 2.5298 -4.7353 35 1 5.1787 2.3785 0.1248 36 1 3.7843 3.4304 0.5171 37 1 2.3963 1.9125 2.5022 38 1 2.2055 2.6431 6.8395 39 1 6.3600 0.1935 4.0096 40 1 7.2573 1.0888 6.7864 41 1 8.3240 0.4877 5.4941 42 1 7.4477 2.0223 5.2829 43 1 5.3108 -1.6840 5.2435 44 1 7.0760 -1.6770 5.4712 45 1 6.0094 -1.0756 6.7634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082322274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -32.861878 kcal Electronic energy + Delta-G solvation = -27732.856404 eV Core-core repulsion = 23877.274492 eV Total energy + Delta-G solvation = -3855.581913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77348 -40.39913 -39.24367 -37.56421 -36.79565 -35.56073 -33.70940 -31.10622 -30.45735 -29.00914 -28.09042 -27.57919 -26.88259 -25.87056 -23.83321 -22.47369 -22.29524 -21.92588 -20.90390 -19.15753 -19.01312 -17.95245 -17.79224 -17.16740 -16.75414 -16.48104 -16.30353 -15.88328 -15.81570 -15.35128 -15.20616 -15.11945 -14.97380 -14.68128 -14.47237 -14.10232 -13.99148 -13.65056 -13.29120 -13.11834 -13.05245 -12.98137 -12.78942 -12.64103 -12.44191 -12.36692 -12.22296 -12.19427 -12.09311 -11.88286 -11.68425 -10.82406 -10.79987 -10.77854 -10.59699 -10.39243 -10.24647 -9.87503 -8.99568 -7.89028 -5.28782 -0.46963 0.27689 0.65777 0.93894 1.44831 1.47285 1.56896 2.02331 2.26304 2.44901 2.72192 3.11134 3.29221 3.46587 3.58133 3.76986 3.85820 3.86424 4.01345 4.10872 4.17257 4.29326 4.35784 4.40498 4.55097 4.57974 4.61557 4.71319 4.77716 4.83086 4.83804 4.88908 4.89837 4.96964 5.15550 5.23743 5.30185 5.31527 5.39429 5.51289 5.61237 6.10758 6.24167 6.25762 6.58468 7.01616 7.09036 7.66322 8.29730 9.19964 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002943 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.249940 B = 9513.404421 C =10448.020434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.091 0.909 5 C 0.175 3.825 6 N -0.619 5.619 7 C -0.250 4.250 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.271 1.271 15 C 0.134 3.866 16 C 0.152 3.848 17 H 0.081 0.919 18 N -0.688 5.688 19 C 0.590 3.410 20 O -0.559 6.559 21 C -0.030 4.030 22 N -0.466 5.466 23 C -0.007 4.007 24 S 0.283 5.717 25 C -0.184 4.184 26 C -0.059 4.059 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.010 0.990 34 H 0.250 0.750 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.415 0.585 38 H 0.242 0.758 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 -3.512 27.996 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.109 0.891 5 C 0.049 3.951 6 N -0.347 5.347 7 C -0.379 4.379 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.595 5.595 11 Si 0.810 3.190 12 H -0.208 1.208 13 H -0.218 1.218 14 H -0.195 1.195 15 C 0.007 3.993 16 C 0.045 3.955 17 H 0.099 0.901 18 N -0.339 5.339 19 C 0.376 3.624 20 O -0.439 6.439 21 C -0.164 4.164 22 N -0.181 5.181 23 C -0.306 4.306 24 S 0.540 5.460 25 C -0.309 4.309 26 C -0.080 4.080 27 C -0.196 4.196 28 C -0.194 4.194 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.252 0.748 38 H 0.258 0.742 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.348 -3.862 28.174 28.440 hybrid contribution -0.331 0.603 -2.364 2.462 sum 0.017 -3.259 25.810 26.015 Atomic orbital electron populations 1.23006 0.79225 1.04021 1.00749 1.87876 1.21863 1.26798 1.94938 1.23456 0.93414 0.85234 0.96022 0.89149 1.21312 0.87768 0.94462 0.91570 1.44512 1.22240 1.66052 1.01915 1.19449 0.99172 1.32429 0.86802 0.90029 1.25690 0.97605 1.01789 1.00284 1.70145 1.14104 1.53441 1.21836 0.85007 0.78124 0.77445 0.78398 1.20847 1.21751 1.19545 1.21867 0.97404 0.95297 0.84741 1.21900 0.95981 0.98551 0.79067 0.90122 1.45574 1.19797 1.63003 1.05495 1.17529 0.82885 0.77152 0.84881 1.90672 1.28798 1.46218 1.78200 1.20026 0.94455 1.07211 0.94701 1.66921 1.22831 1.15637 1.12678 1.29009 1.04203 1.04509 0.92857 1.82420 1.13353 1.46696 1.03565 1.25942 1.02358 1.03668 0.98944 1.20278 0.88552 0.94777 1.04356 1.21879 0.97040 0.99750 1.00965 1.21845 1.02585 0.93889 1.01087 0.94356 0.87844 0.92089 0.94589 0.97211 0.94094 0.94254 0.94911 0.74760 0.74182 0.88229 0.90671 0.90603 0.93476 0.93815 0.90637 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.40 -15.11 10.45 -148.98 -1.56 -16.67 16 3 C 0.08 3.13 3.05 31.79 0.10 3.23 16 4 H 0.09 3.16 7.68 -2.38 -0.02 3.14 16 5 C 0.17 9.07 5.19 86.73 0.45 9.52 16 6 N -0.62 -33.99 3.39 -691.96 -2.35 -36.34 16 7 C -0.25 -14.71 10.27 84.03 0.86 -13.85 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 9 C -0.06 -3.53 5.46 84.86 0.46 -3.06 16 10 N -0.95 -57.83 10.41 21.65 0.23 -57.60 16 11 Si 0.98 46.96 29.56 68.60 2.03 48.99 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 15 C 0.13 6.17 6.93 86.86 0.60 6.78 16 16 C 0.15 6.16 3.04 46.38 0.14 6.31 16 17 H 0.08 3.70 7.73 -2.39 -0.02 3.68 16 18 N -0.69 -23.31 5.23 -439.37 -2.30 -25.60 16 19 C 0.59 20.41 7.79 86.62 0.67 21.08 16 20 O -0.56 -22.47 13.61 -4.14 -0.06 -22.53 16 21 C -0.03 -0.82 6.70 40.55 0.27 -0.55 16 22 N -0.47 -10.70 10.14 -193.03 -1.96 -12.65 16 23 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 24 S 0.28 3.41 22.44 -56.49 -1.27 2.14 16 25 C -0.18 -4.05 5.03 24.98 0.13 -3.92 16 26 C -0.06 -1.29 3.12 -11.54 -0.04 -1.33 16 27 C -0.14 -2.32 9.05 71.98 0.65 -1.67 16 28 C -0.14 -2.34 9.16 71.98 0.66 -1.68 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 1.40 8.11 -2.39 -0.02 1.39 16 32 H 0.04 2.03 7.11 -2.39 -0.02 2.01 16 33 H 0.01 0.57 7.71 -2.39 -0.02 0.55 16 34 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 12.24 8.05 -92.71 -0.75 11.50 16 38 H 0.24 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.10 3.00 4.94 -2.39 -0.01 2.99 16 40 H 0.07 0.89 7.84 -2.39 -0.02 0.87 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.46 380.98 0.82 -75.64 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.26 Total: 20.32 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.78 Total: 24.30 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -6.38 Total: -132.20 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.61 Total: -39.20 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.27 Total: 2.14 kcal Total: -76.46 0.82 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082322274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.782 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds