Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47076 * 2 1 4 4 C 1.52999 * 109.47257 * 239.99460 * 2 1 3 5 5 C 1.50703 * 109.46707 * 119.99602 * 2 1 3 6 6 C 1.34233 * 122.10754 * 75.00264 * 5 2 1 7 7 S 1.71072 * 109.09140 * 179.70649 * 6 5 2 8 8 C 1.76099 * 90.30126 * 0.33765 * 7 6 5 9 9 C 1.47250 * 125.54267 * 179.97438 * 8 7 6 10 10 O 1.21625 * 120.00356 * 179.69218 * 9 8 7 11 11 N 1.34778 * 119.99865 * 359.69674 * 9 8 7 12 12 C 1.46505 * 120.00074 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.91310 * 37.44311 * 12 11 9 14 14 C 1.54914 * 111.00202 * 273.54598 * 12 11 9 15 15 N 1.47426 * 104.82992 * 204.91694 * 14 12 11 16 16 C 1.36936 * 125.64583 * 204.09666 * 15 14 12 17 17 H 1.08004 * 120.00261 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00145 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99550 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47084 * 60.00066 * 20 18 16 22 22 H 1.48498 * 109.46831 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47190 * 299.99852 * 20 18 16 24 24 C 1.47018 * 108.70517 * 24.12623 * 15 14 12 25 25 C 1.54325 * 107.40412 * 358.86539 * 24 15 14 26 26 H 1.09002 * 110.72265 * 219.52294 * 25 24 15 27 27 O 1.42895 * 110.72044 * 96.24103 * 25 24 15 28 28 N 1.30560 * 108.91652 * 359.65806 * 8 7 6 29 29 H 1.08991 * 109.47331 * 300.00371 * 1 2 3 30 30 H 1.09004 * 109.46741 * 60.00655 * 1 2 3 31 31 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47037 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47018 * 299.99698 * 3 2 1 34 34 H 1.09001 * 109.47274 * 59.99773 * 3 2 1 35 35 H 1.08997 * 109.47285 * 300.00347 * 4 2 1 36 36 H 1.09005 * 109.46651 * 60.00878 * 4 2 1 37 37 H 1.09003 * 109.46596 * 179.97438 * 4 2 1 38 38 H 1.07999 * 125.45479 * 359.97438 * 6 5 2 39 39 H 0.96998 * 120.00184 * 359.97438 * 11 9 8 40 40 H 1.08999 * 110.37121 * 86.07429 * 14 12 11 41 41 H 1.09003 * 110.36718 * 323.75334 * 14 12 11 42 42 H 0.97004 * 119.99606 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.88241 * 118.36067 * 24 15 14 44 44 H 1.09000 * 109.88049 * 239.37196 * 24 15 14 45 45 H 0.96706 * 113.99347 * 61.46045 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 1.9927 -2.0469 1.3490 7 16 2.6497 -2.4941 2.8639 8 6 2.9329 -0.7999 3.2517 9 6 3.5293 -0.2956 4.5000 10 8 3.6842 0.9000 4.6604 11 7 3.9035 -1.1590 5.4649 12 6 4.4963 -0.6573 6.7072 13 1 4.0199 0.2725 7.0178 14 6 6.0272 -0.4737 6.5572 15 7 6.5559 -0.5777 7.9295 16 6 7.7355 -0.0419 8.3730 17 1 8.3655 0.5135 7.6940 18 6 8.1215 -0.2126 9.6954 19 7 7.3540 -0.8898 10.5228 20 14 9.7309 0.5178 10.3003 21 1 9.7036 1.9917 10.1219 22 1 9.9108 0.1960 11.7388 23 1 10.8580 -0.0544 9.5209 24 6 5.6075 -1.3527 8.7427 25 6 4.4167 -1.7244 7.8341 26 1 3.4760 -1.6439 8.3789 27 8 4.5811 -3.0386 7.2975 28 7 2.5344 -0.0639 2.2496 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 -1.7490 -1.2491 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7209 -1.2493 38 1 1.6114 -2.7307 0.6051 39 1 3.7797 -2.1125 5.3371 40 1 6.2525 0.5066 6.1372 41 1 6.4441 -1.2611 5.9293 42 1 7.6240 -1.0094 11.4468 43 1 6.0891 -2.2583 9.1116 44 1 5.2596 -0.7499 9.5815 45 1 4.6187 -3.7350 7.9675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083543322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -13.614186 kcal Electronic energy + Delta-G solvation = -27159.486156 eV Core-core repulsion = 23304.738886 eV Total energy + Delta-G solvation = -3854.747270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69845 -39.55656 -37.89842 -36.19676 -34.87574 -34.10328 -31.77704 -30.41462 -28.72685 -27.85406 -27.57894 -27.12201 -25.84152 -24.45498 -22.77735 -20.72671 -20.28446 -20.03519 -19.23748 -18.22025 -17.35030 -16.94157 -16.66369 -15.77694 -15.49150 -15.35625 -14.84870 -14.56114 -14.34269 -14.15728 -14.06476 -13.69328 -13.52930 -13.20350 -12.80570 -12.65652 -12.55462 -12.48720 -12.37714 -12.26763 -11.91994 -11.33781 -11.22755 -11.20841 -11.06732 -10.99523 -10.84696 -10.56451 -10.51815 -10.36361 -10.13273 -9.88984 -9.83373 -9.70240 -9.39150 -9.02560 -8.79637 -8.66596 -6.90008 -5.76541 -3.09507 0.07812 0.98851 1.40341 2.21760 2.84354 3.20795 3.40895 3.44650 3.46143 4.03348 4.40962 4.48789 4.50563 4.68631 4.71189 4.85299 4.95056 5.05959 5.22260 5.27317 5.33106 5.41237 5.45950 5.51416 5.56275 5.62508 5.65198 5.69646 5.76123 5.80909 5.95658 5.99144 6.01535 6.15810 6.23173 6.44522 6.63536 6.85272 7.27701 7.34059 7.41375 7.63829 7.72070 8.01176 8.17062 8.22093 9.16238 9.76107 10.40000 11.35795 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002435 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.740757 B =11494.890276 C =12154.545771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.004 3.996 3 C -0.132 4.132 4 C -0.139 4.139 5 C 0.069 3.931 6 C -0.268 4.268 7 S 0.181 5.819 8 C 0.006 3.994 9 C 0.589 3.411 10 O -0.499 6.499 11 N -0.697 5.697 12 C 0.141 3.859 13 H 0.107 0.893 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.927 5.927 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.065 0.935 27 O -0.569 6.569 28 N -0.392 5.392 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.182 0.818 39 H 0.406 0.594 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 -6.322 -19.236 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 C -0.190 4.190 4 C -0.197 4.197 5 C -0.069 4.069 6 C -0.409 4.409 7 S 0.437 5.563 8 C -0.270 4.270 9 C 0.369 3.631 10 O -0.373 6.373 11 N -0.350 5.350 12 C 0.036 3.964 13 H 0.125 0.875 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.083 0.917 27 O -0.376 6.376 28 N -0.108 5.108 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.199 0.801 39 H 0.242 0.758 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -15.011 -5.493 -18.830 24.700 hybrid contribution 0.469 -0.152 0.054 0.495 sum -14.542 -5.644 -18.776 24.411 Atomic orbital electron populations 1.21889 0.93183 1.02006 1.02434 1.19213 0.95570 0.95707 0.89435 1.21734 1.01538 0.93704 1.01988 1.21934 1.01549 0.99994 0.96240 1.20226 1.00965 0.89646 0.96020 1.26457 1.10410 1.00234 1.03752 1.83960 1.52302 1.10407 1.09648 1.27579 1.07809 0.91952 0.99687 1.16727 0.78772 0.86368 0.81182 1.90872 1.53557 1.14660 1.78209 1.45565 1.62241 1.10060 1.17138 1.22519 0.95863 0.96702 0.81313 0.87476 1.21848 0.89718 0.99116 0.89003 1.44262 1.21578 1.62524 1.04304 1.19051 0.94902 1.27234 0.94084 0.90257 1.24790 0.99026 1.00569 0.96090 1.69893 1.37611 1.45239 1.04791 0.86136 0.82864 0.78827 0.77596 1.21054 1.21593 1.21146 1.21890 0.86776 0.96970 0.91561 1.23568 0.99307 0.82144 0.94149 0.91739 1.86222 1.96676 1.16256 1.38436 1.66461 1.08763 1.36612 0.98940 0.92214 0.91748 0.92547 0.92344 0.92645 0.91460 0.92464 0.91678 0.92235 0.80103 0.75845 0.93398 0.95492 0.93645 0.92775 0.92459 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.42 37.16 0.31 -0.71 16 2 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 3 C -0.13 -1.31 7.89 37.16 0.29 -1.02 16 4 C -0.14 -0.95 8.12 37.16 0.30 -0.65 16 5 C 0.07 0.78 5.38 -84.48 -0.45 0.33 16 6 C -0.27 -2.45 10.10 29.32 0.30 -2.15 16 7 S 0.18 1.81 22.31 -107.50 -2.40 -0.59 16 8 C 0.01 0.09 7.46 -14.43 -0.11 -0.01 16 9 C 0.59 9.95 7.81 -12.60 -0.10 9.85 16 10 O -0.50 -10.32 16.82 5.26 0.09 -10.23 16 11 N -0.70 -10.96 5.18 -52.72 -0.27 -11.24 16 12 C 0.14 2.59 3.20 -65.64 -0.21 2.38 16 13 H 0.11 2.06 7.73 -51.93 -0.40 1.66 16 14 C 0.13 2.86 6.92 -2.53 -0.02 2.84 16 15 N -0.60 -15.28 3.39 -170.07 -0.58 -15.85 16 16 C -0.22 -6.28 10.28 -15.06 -0.15 -6.44 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.53 10.31 55.49 0.57 -25.96 16 20 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.15 3.51 5.13 -3.07 -0.02 3.49 16 25 C 0.07 1.18 4.22 -24.76 -0.10 1.08 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 O -0.57 -8.64 12.15 -35.23 -0.43 -9.07 16 28 N -0.39 -5.70 9.53 -7.69 -0.07 -5.77 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 35 H 0.06 0.32 7.07 -51.93 -0.37 -0.05 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.18 1.10 7.23 -52.49 -0.38 0.72 16 39 H 0.41 5.58 6.71 -40.82 -0.27 5.31 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 44 H 0.06 1.44 7.37 -51.93 -0.38 1.06 16 45 H 0.38 4.47 9.09 45.56 0.41 4.88 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -33.24 380.00 -8.54 -41.78 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.96 Total: 5.58 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.19 Total: 8.54 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.35 Total: -58.83 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.34 Total: -19.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.40 Total: -0.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.24 -8.54 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083543322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.166 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds