Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47119 * 2 1 4 4 C 1.50703 * 109.47275 * 119.99953 * 2 1 3 5 5 N 1.30940 * 122.90394 * 293.07645 * 4 2 1 6 6 C 1.29427 * 117.36250 * 180.30479 * 5 4 2 7 7 S 1.70952 * 110.39257 * 359.73124 * 6 5 4 8 8 C 1.35668 * 122.90210 * 112.88085 * 4 2 1 9 9 C 1.46679 * 126.13293 * 0.02562 * 8 4 2 10 10 O 1.21689 * 119.99703 * 5.75485 * 9 8 4 11 11 N 1.34771 * 120.00036 * 185.76087 * 9 8 4 12 12 C 1.46500 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.08987 * 109.46488 * 34.96827 * 12 11 9 14 14 C 1.53042 * 109.45562 * 274.99132 * 12 11 9 15 15 C 1.53199 * 109.30940 * 178.62802 * 14 12 11 16 16 N 1.46923 * 108.77317 * 54.63985 * 15 14 12 17 17 C 1.36938 * 120.63157 * 126.36791 * 16 15 14 18 18 H 1.08004 * 119.99611 * 329.79594 * 17 16 15 19 19 C 1.38805 * 120.00227 * 149.52064 * 17 16 15 20 20 N 1.31619 * 120.00164 * 348.32856 * 19 17 16 21 21 Si 1.86801 * 120.00135 * 168.32586 * 19 17 16 22 22 H 1.48501 * 109.47352 * 60.00007 * 21 19 17 23 23 H 1.48506 * 109.47378 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47159 * 299.99960 * 21 19 17 25 25 C 1.46925 * 118.74245 * 306.64140 * 16 15 14 26 26 C 1.52763 * 109.00821 * 53.30916 * 25 16 15 27 27 H 1.08998 * 109.35819 * 65.49880 * 26 25 16 28 28 O 1.42901 * 109.56695 * 185.55912 * 26 25 16 29 29 H 1.08996 * 109.47084 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47359 * 60.00002 * 1 2 3 31 31 H 1.09006 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47185 * 239.99468 * 2 1 3 33 33 H 1.08999 * 109.47197 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47007 * 299.99772 * 3 2 1 35 35 H 1.09001 * 109.47463 * 60.00221 * 3 2 1 36 36 H 1.08004 * 124.80738 * 179.76504 * 6 5 4 37 37 H 0.97001 * 120.00231 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.49802 * 58.68209 * 14 12 11 39 39 H 1.08996 * 109.50180 * 298.57943 * 14 12 11 40 40 H 1.08994 * 109.58530 * 294.85183 * 15 14 12 41 41 H 1.09000 * 109.58353 * 174.42648 * 15 14 12 42 42 H 0.97002 * 120.00577 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.59223 * 173.14478 * 25 16 15 44 44 H 1.09003 * 109.58151 * 293.57392 * 25 16 15 45 45 H 0.96701 * 113.99676 * 299.96619 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8632 -0.2416 2.4413 6 6 2.3441 -0.9373 3.4211 7 16 3.1002 -2.3528 2.8319 8 6 2.6956 -1.8928 1.1796 9 6 3.0232 -2.6493 -0.0336 10 8 2.7872 -2.1745 -1.1289 11 7 3.5855 -3.8701 0.0647 12 6 3.9132 -4.6254 -1.1471 13 1 4.2326 -3.9366 -1.9290 14 6 2.6767 -5.3941 -1.6186 15 6 3.0134 -6.1553 -2.9048 16 7 4.1914 -6.9987 -2.6605 17 6 4.1569 -8.3407 -2.9307 18 1 3.2269 -8.8839 -2.8503 19 6 5.3159 -9.0016 -3.3134 20 7 6.3892 -8.3130 -3.6394 21 14 5.3525 -10.8686 -3.3659 22 1 4.3281 -11.3571 -4.3235 23 1 6.6961 -11.3253 -3.8035 24 1 5.0623 -11.4076 -2.0130 25 6 5.4052 -6.3760 -2.1150 26 6 5.0436 -5.6113 -0.8430 27 1 4.7159 -6.3159 -0.0786 28 8 6.1876 -4.8951 -0.3735 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 2.2769 -0.6627 4.4635 37 1 3.7739 -4.2485 0.9378 38 1 1.8647 -4.6934 -1.8126 39 1 2.3714 -6.1008 -0.8470 40 1 3.2312 -5.4457 -3.7029 41 1 2.1684 -6.7818 -3.1904 42 1 7.1990 -8.7749 -3.9072 43 1 6.1379 -7.1479 -1.8797 44 1 5.8220 -5.6847 -2.8475 45 1 6.9443 -5.4584 -0.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090633331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -25.189386 kcal Electronic energy + Delta-G solvation = -27820.644953 eV Core-core repulsion = 23965.395744 eV Total energy + Delta-G solvation = -3855.249208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67016 -39.44908 -37.83495 -35.30639 -35.01984 -34.34096 -32.31961 -30.68363 -29.30891 -28.86570 -27.18363 -26.19572 -25.06314 -22.96695 -22.29992 -21.91601 -21.04276 -19.95500 -19.10765 -18.02007 -17.27353 -16.73330 -16.53316 -16.02017 -15.36817 -15.32373 -14.82589 -14.52505 -14.36221 -14.18156 -13.91667 -13.78256 -13.59977 -13.30403 -12.96319 -12.74042 -12.50184 -12.25306 -12.18883 -12.04180 -11.72404 -11.28898 -11.23806 -11.13389 -10.99259 -10.86113 -10.81828 -10.46940 -10.24605 -10.13181 -10.06972 -9.77188 -9.74451 -9.54354 -9.36929 -9.10063 -8.83770 -8.57871 -6.77074 -5.89407 -3.37743 0.06944 0.98378 1.36070 2.30882 3.17093 3.18339 3.31755 3.37580 3.38018 3.91670 4.37570 4.52381 4.66298 4.76075 4.88190 5.13179 5.18146 5.28594 5.34738 5.35648 5.41622 5.54351 5.60955 5.74952 5.79696 5.86733 5.89278 5.95323 6.03723 6.06915 6.13777 6.18291 6.34748 6.40804 6.46971 6.66845 6.76003 6.87707 7.10025 7.36322 7.44522 7.57739 7.68714 8.05745 8.22496 8.35309 9.09319 9.70380 10.27553 11.18807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.002749 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.291697 B =10181.313542 C =10700.648404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.136 4.136 4 C 0.150 3.850 5 N -0.468 5.468 6 C 0.029 3.971 7 S 0.158 5.842 8 C -0.285 4.285 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.706 5.706 12 C 0.163 3.837 13 H 0.092 0.908 14 C -0.140 4.140 15 C 0.145 3.855 16 N -0.589 5.589 17 C -0.257 4.257 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.149 3.851 26 C 0.071 3.929 27 H 0.051 0.949 28 O -0.573 6.573 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.204 0.796 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.256 0.744 43 H 0.096 0.904 44 H 0.030 0.970 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 13.543 14.521 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.194 4.194 4 C 0.012 3.988 5 N -0.181 5.181 6 C -0.266 4.266 7 S 0.413 5.587 8 C -0.409 4.409 9 C 0.380 3.620 10 O -0.401 6.401 11 N -0.355 5.355 12 C 0.059 3.941 13 H 0.110 0.890 14 C -0.180 4.180 15 C 0.019 3.981 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.736 3.264 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.022 3.978 26 C 0.010 3.990 27 H 0.069 0.931 28 O -0.378 6.378 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.221 0.779 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.114 0.886 44 H 0.048 0.952 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.864 13.937 14.248 21.080 hybrid contribution 0.322 -1.247 0.096 1.291 sum -6.542 12.690 14.343 20.238 Atomic orbital electron populations 1.21728 0.93797 1.01826 1.01992 1.20424 0.96299 0.96272 0.94140 1.21726 1.00881 0.94749 1.02013 1.20701 0.94235 0.90625 0.93262 1.66037 1.20782 1.32656 0.98665 1.28694 0.99348 0.95054 1.03546 1.84005 1.52102 1.24276 0.98268 1.25636 1.14291 1.03421 0.97534 1.16659 0.77747 0.80923 0.86682 1.90704 1.54076 1.68580 1.26784 1.46042 1.61774 1.17119 1.10545 1.21086 0.94082 0.92625 0.86275 0.89015 1.22439 0.96280 0.98835 1.00489 1.20947 0.91236 0.93205 0.92752 1.43952 1.09389 1.05010 1.72929 1.19160 0.95714 0.83421 1.40401 0.91505 1.25176 0.97385 0.98359 0.98474 1.69959 1.02764 1.34218 1.47850 0.86312 0.76892 0.85173 0.78004 1.20737 1.21542 1.20945 1.21343 0.90593 0.95929 0.89931 1.22921 0.85050 0.92040 0.98950 0.93082 1.86414 1.24950 1.38531 1.87875 0.92466 0.91882 0.92895 0.85425 0.92979 0.92068 0.92191 0.77921 0.77159 0.91671 0.91991 0.95709 0.92034 0.93367 0.88641 0.95194 0.77643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 2 C -0.05 -0.64 3.15 -91.77 -0.29 -0.93 16 3 C -0.14 -1.49 9.08 37.15 0.34 -1.15 16 4 C 0.15 1.94 5.40 -83.89 -0.45 1.49 16 5 N -0.47 -5.42 10.26 -11.53 -0.12 -5.54 16 6 C 0.03 0.25 12.22 51.75 0.63 0.89 16 7 S 0.16 1.48 22.37 -107.50 -2.41 -0.93 16 8 C -0.28 -3.77 6.48 -37.09 -0.24 -4.02 16 9 C 0.60 9.39 7.73 -12.86 -0.10 9.29 16 10 O -0.52 -9.56 13.68 5.20 0.07 -9.49 16 11 N -0.71 -10.75 4.91 -55.07 -0.27 -11.02 16 12 C 0.16 2.89 2.12 -67.88 -0.14 2.74 16 13 H 0.09 1.86 7.57 -51.94 -0.39 1.46 16 14 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 15 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 16 N -0.59 -14.14 2.99 -172.58 -0.52 -14.66 16 17 C -0.26 -6.76 9.58 -15.06 -0.14 -6.91 16 18 H 0.07 1.72 7.86 -52.48 -0.41 1.30 16 19 C 0.00 0.13 5.03 -17.43 -0.09 0.04 16 20 N -0.90 -25.16 11.06 55.49 0.61 -24.55 16 21 Si 0.91 20.85 29.57 -169.99 -5.03 15.83 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 C 0.15 3.37 4.86 -3.93 -0.02 3.35 16 26 C 0.07 1.30 3.13 -26.83 -0.08 1.22 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -9.56 13.16 -35.23 -0.46 -10.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.13 1.89 4.96 -51.93 -0.26 1.63 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.20 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.39 5.24 7.81 -40.82 -0.32 4.92 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.10 2.36 6.09 -51.93 -0.32 2.04 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.38 5.00 9.08 45.56 0.41 5.41 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -31.04 376.61 -8.76 -39.81 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.90 Total: 9.66 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.42 Total: 5.23 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.29 Total: -55.76 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.39 Total: -19.52 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.41 Total: -0.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.04 -8.76 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.618 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds