Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 C 1.50704 * 109.46644 * 119.99996 * 2 1 3 5 5 N 1.30936 * 122.90226 * 293.22236 * 4 2 1 6 6 C 1.29436 * 117.36549 * 180.02562 * 5 4 2 7 7 S 1.70948 * 110.38582 * 0.02562 * 6 5 4 8 8 C 1.35658 * 122.90355 * 113.25413 * 4 2 1 9 9 C 1.46681 * 126.13140 * 359.97438 * 8 4 2 10 10 O 1.21688 * 120.00075 * 6.07971 * 9 8 4 11 11 N 1.34784 * 120.00103 * 186.07839 * 9 8 4 12 12 C 1.46499 * 119.99988 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.45940 * 324.97694 * 12 11 9 14 14 C 1.53044 * 109.45950 * 84.93351 * 12 11 9 15 15 C 1.53188 * 109.31043 * 181.38335 * 14 12 11 16 16 N 1.46920 * 108.77849 * 305.36570 * 15 14 12 17 17 C 1.36939 * 120.63005 * 233.63270 * 16 15 14 18 18 H 1.07995 * 120.00263 * 33.65184 * 17 16 15 19 19 C 1.38814 * 119.99943 * 213.65230 * 17 16 15 20 20 N 1.31618 * 119.99795 * 16.86833 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 196.87197 * 19 17 16 22 22 H 1.48502 * 109.46966 * 90.00046 * 21 19 17 23 23 H 1.48498 * 109.46991 * 209.99869 * 21 19 17 24 24 H 1.48494 * 109.47074 * 330.00172 * 21 19 17 25 25 C 1.46927 * 118.73973 * 53.60595 * 16 15 14 26 26 C 1.53041 * 109.45925 * 205.00212 * 12 11 9 27 27 H 1.09001 * 109.49651 * 298.60017 * 26 12 11 28 28 O 1.42899 * 109.49857 * 58.66022 * 26 12 11 29 29 H 1.08997 * 109.47628 * 300.00246 * 1 2 3 30 30 H 1.09006 * 109.46779 * 60.00127 * 1 2 3 31 31 H 1.09002 * 109.47611 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47118 * 239.99627 * 2 1 3 33 33 H 1.09003 * 109.47283 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47331 * 300.00148 * 3 2 1 35 35 H 1.08998 * 109.47353 * 59.99771 * 3 2 1 36 36 H 1.08001 * 124.80830 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99893 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.49854 * 301.33633 * 14 12 11 39 39 H 1.08996 * 109.49642 * 61.43264 * 14 12 11 40 40 H 1.08997 * 109.58424 * 185.57732 * 15 14 12 41 41 H 1.09004 * 109.58538 * 65.15621 * 15 14 12 42 42 H 0.97008 * 120.00048 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58758 * 186.60138 * 25 16 15 44 44 H 1.09003 * 109.69887 * 66.25460 * 25 16 15 45 45 H 0.96700 * 114.00160 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.8605 -0.2430 2.4415 6 6 2.3368 -0.9413 3.4218 7 16 3.0982 -2.3537 2.8322 8 6 2.7018 -1.8892 1.1792 9 6 3.0363 -2.6417 -0.0345 10 8 2.8058 -2.1638 -1.1297 11 7 3.5989 -3.8626 0.0631 12 6 3.9325 -4.6145 -1.1492 13 1 3.1843 -4.4164 -1.9167 14 6 5.3097 -4.1799 -1.6559 15 6 5.6400 -4.9429 -2.9425 16 7 5.5201 -6.3838 -2.6818 17 6 6.5557 -7.2331 -2.9673 18 1 7.5760 -6.8960 -2.8593 19 6 6.2941 -8.5273 -3.3955 20 7 5.0977 -8.8428 -3.8442 21 14 7.6401 -9.8212 -3.3349 22 1 7.6024 -10.5136 -2.0217 23 1 7.4256 -10.8098 -4.4220 24 1 8.9622 -9.1689 -3.5127 25 6 4.2681 -6.8963 -2.1085 26 6 3.9530 -6.1114 -0.8313 27 1 4.7179 -6.3135 -0.0815 28 8 2.6759 -6.5099 -0.3292 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.2641 -0.6697 4.4646 37 1 3.7823 -4.2437 0.9360 38 1 5.3010 -3.1092 -1.8600 39 1 6.0621 -4.4003 -0.8988 40 1 6.6588 -4.7114 -3.2533 41 1 4.9416 -4.6543 -3.7281 42 1 4.9149 -9.7472 -4.1438 43 1 4.3816 -7.9536 -1.8691 44 1 3.4567 -6.7691 -2.8251 45 1 2.6164 -7.4491 -0.1066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090633333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -26.734680 kcal Electronic energy + Delta-G solvation = -27802.523718 eV Core-core repulsion = 23947.207501 eV Total energy + Delta-G solvation = -3855.316217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67559 -39.45475 -37.83706 -35.31829 -35.02008 -34.34094 -32.31269 -30.69619 -29.35059 -28.85924 -27.18188 -26.19629 -25.05097 -22.98438 -22.31736 -21.91864 -21.05727 -19.96555 -19.12557 -18.02415 -17.26900 -16.74820 -16.53038 -16.03725 -15.41183 -15.29937 -14.82237 -14.50372 -14.32776 -14.23940 -13.92942 -13.80625 -13.61255 -13.30700 -12.96592 -12.75356 -12.51921 -12.26421 -12.18817 -12.05913 -11.73549 -11.33011 -11.23781 -11.16269 -10.99549 -10.87353 -10.80932 -10.48248 -10.25324 -10.13847 -10.10408 -9.77343 -9.73458 -9.55882 -9.38479 -9.10188 -8.83706 -8.58153 -6.74657 -5.91429 -3.40363 0.06416 0.97642 1.35204 2.30453 3.13001 3.20670 3.30088 3.37868 3.39113 3.91219 4.37063 4.50436 4.65733 4.75687 4.87617 5.13117 5.18090 5.24940 5.34126 5.35452 5.40432 5.52851 5.61093 5.74935 5.79774 5.85293 5.89274 5.94720 6.00906 6.04276 6.12709 6.18442 6.34279 6.40250 6.46277 6.68052 6.75153 6.87649 7.02024 7.32752 7.37263 7.56415 7.71653 8.02698 8.21722 8.35832 9.07538 9.68980 10.28992 11.16770 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.002732 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.209394 B =10244.659314 C =10676.336159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.136 4.136 4 C 0.150 3.850 5 N -0.468 5.468 6 C 0.030 3.970 7 S 0.157 5.843 8 C -0.284 4.284 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.706 5.706 12 C 0.163 3.837 13 H 0.092 0.908 14 C -0.140 4.140 15 C 0.145 3.855 16 N -0.587 5.587 17 C -0.264 4.264 18 H 0.066 0.934 19 C 0.010 3.990 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.153 3.847 26 C 0.072 3.928 27 H 0.052 0.948 28 O -0.573 6.573 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.204 0.796 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.256 0.744 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 13.893 14.944 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.193 4.193 4 C 0.012 3.988 5 N -0.181 5.181 6 C -0.266 4.266 7 S 0.412 5.588 8 C -0.408 4.408 9 C 0.380 3.620 10 O -0.401 6.401 11 N -0.355 5.355 12 C 0.060 3.940 13 H 0.110 0.890 14 C -0.180 4.180 15 C 0.019 3.981 16 N -0.311 5.311 17 C -0.393 4.393 18 H 0.084 0.916 19 C -0.190 4.190 20 N -0.539 5.539 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.202 1.202 25 C 0.026 3.974 26 C 0.011 3.989 27 H 0.070 0.930 28 O -0.378 6.378 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.221 0.779 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.983 14.319 14.655 21.345 hybrid contribution 0.565 -1.186 0.155 1.323 sum -5.418 13.134 14.810 20.523 Atomic orbital electron populations 1.21732 0.93795 1.01876 1.01991 1.20425 0.96322 0.96259 0.94131 1.21723 1.00841 0.94748 1.02023 1.20698 0.94137 0.90694 0.93265 1.66037 1.20846 1.32581 0.98659 1.28693 0.99466 0.94887 1.03541 1.83982 1.52184 1.24398 0.98229 1.25629 1.14333 1.03401 0.97486 1.16660 0.77509 0.81144 0.86684 1.90706 1.54333 1.68247 1.26810 1.46038 1.61942 1.17013 1.10514 1.21075 0.97890 0.88916 0.86152 0.88983 1.22441 0.95105 1.00104 1.00389 1.20953 0.99479 0.85083 0.92621 1.43932 1.14175 1.01551 1.71408 1.19137 0.86952 0.93314 1.39911 0.91620 1.25226 0.96745 0.99560 0.97481 1.70043 1.21183 1.19241 1.43414 0.86296 0.81636 0.81524 0.77325 1.21323 1.21636 1.20231 1.21310 0.88677 0.97583 0.89871 1.22990 0.84049 0.93467 0.98416 0.92961 1.86421 1.34338 1.30416 1.86580 0.92457 0.91874 0.92864 0.85426 0.92992 0.92061 0.92204 0.77913 0.77158 0.91662 0.91981 0.91989 0.95731 0.93427 0.89920 0.94926 0.77672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.17 37.16 0.34 -1.18 16 2 C -0.05 -0.64 3.15 -91.78 -0.29 -0.93 16 3 C -0.14 -1.47 9.08 37.15 0.34 -1.13 16 4 C 0.15 1.94 5.40 -83.89 -0.45 1.49 16 5 N -0.47 -5.40 10.26 -11.53 -0.12 -5.52 16 6 C 0.03 0.26 12.22 51.75 0.63 0.89 16 7 S 0.16 1.45 22.37 -107.50 -2.41 -0.96 16 8 C -0.28 -3.75 6.47 -37.10 -0.24 -3.99 16 9 C 0.60 9.35 7.73 -12.85 -0.10 9.25 16 10 O -0.52 -9.52 13.69 5.20 0.07 -9.45 16 11 N -0.71 -10.67 4.91 -55.07 -0.27 -10.94 16 12 C 0.16 2.87 2.12 -67.89 -0.14 2.73 16 13 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 14 C -0.14 -2.46 5.65 -26.61 -0.15 -2.61 16 15 C 0.15 3.01 6.52 -3.72 -0.02 2.98 16 16 N -0.59 -14.06 2.96 -172.33 -0.51 -14.57 16 17 C -0.26 -6.93 9.51 -15.06 -0.14 -7.07 16 18 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.01 0.27 4.87 -17.43 -0.08 0.18 16 20 N -0.90 -25.10 11.62 55.49 0.65 -24.45 16 21 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.15 3.43 4.90 -3.71 -0.02 3.41 16 26 C 0.07 1.29 3.14 -26.61 -0.08 1.21 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 O -0.57 -9.45 13.16 -35.23 -0.46 -9.91 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.89 4.96 -51.93 -0.26 1.63 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.39 5.18 7.81 -40.82 -0.32 4.86 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 2.01 6.50 -51.93 -0.34 1.68 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.38 4.89 9.08 45.56 0.41 5.30 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -31.21 377.43 -8.73 -39.94 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.92 Total: 9.18 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.42 Total: 5.22 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.25 Total: -55.48 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.39 Total: -19.36 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.41 Total: -0.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.21 -8.73 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.209 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds