Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 C 1.50704 * 109.46644 * 119.99996 * 2 1 3 5 5 N 1.30936 * 122.90226 * 293.22236 * 4 2 1 6 6 C 1.29436 * 117.36549 * 180.02562 * 5 4 2 7 7 S 1.70948 * 110.38582 * 0.02562 * 6 5 4 8 8 C 1.35658 * 122.90355 * 113.25413 * 4 2 1 9 9 C 1.46681 * 126.13140 * 359.97438 * 8 4 2 10 10 O 1.21688 * 120.00075 * 6.07971 * 9 8 4 11 11 N 1.34784 * 120.00103 * 186.07839 * 9 8 4 12 12 C 1.46499 * 119.99988 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.45940 * 324.97694 * 12 11 9 14 14 C 1.53044 * 109.45950 * 84.93351 * 12 11 9 15 15 C 1.53188 * 109.31043 * 181.38335 * 14 12 11 16 16 N 1.46920 * 108.77849 * 305.36570 * 15 14 12 17 17 C 1.36939 * 120.63005 * 233.63270 * 16 15 14 18 18 H 1.07995 * 120.00263 * 33.65184 * 17 16 15 19 19 C 1.38814 * 119.99943 * 213.65230 * 17 16 15 20 20 N 1.31618 * 119.99795 * 16.86833 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 196.87197 * 19 17 16 22 22 H 1.48502 * 109.46966 * 90.00046 * 21 19 17 23 23 H 1.48498 * 109.46991 * 209.99869 * 21 19 17 24 24 H 1.48494 * 109.47074 * 330.00172 * 21 19 17 25 25 C 1.46927 * 118.73973 * 53.60595 * 16 15 14 26 26 C 1.53041 * 109.45925 * 205.00212 * 12 11 9 27 27 H 1.09001 * 109.49651 * 298.60017 * 26 12 11 28 28 O 1.42899 * 109.49857 * 58.66022 * 26 12 11 29 29 H 1.08997 * 109.47628 * 300.00246 * 1 2 3 30 30 H 1.09006 * 109.46779 * 60.00127 * 1 2 3 31 31 H 1.09002 * 109.47611 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47118 * 239.99627 * 2 1 3 33 33 H 1.09003 * 109.47283 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47331 * 300.00148 * 3 2 1 35 35 H 1.08998 * 109.47353 * 59.99771 * 3 2 1 36 36 H 1.08001 * 124.80830 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99893 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.49854 * 301.33633 * 14 12 11 39 39 H 1.08996 * 109.49642 * 61.43264 * 14 12 11 40 40 H 1.08997 * 109.58424 * 185.57732 * 15 14 12 41 41 H 1.09004 * 109.58538 * 65.15621 * 15 14 12 42 42 H 0.97008 * 120.00048 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58758 * 186.60138 * 25 16 15 44 44 H 1.09003 * 109.69887 * 66.25460 * 25 16 15 45 45 H 0.96700 * 114.00160 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.8605 -0.2430 2.4415 6 6 2.3368 -0.9413 3.4218 7 16 3.0982 -2.3537 2.8322 8 6 2.7018 -1.8892 1.1792 9 6 3.0363 -2.6417 -0.0345 10 8 2.8058 -2.1638 -1.1297 11 7 3.5989 -3.8626 0.0631 12 6 3.9325 -4.6145 -1.1492 13 1 3.1843 -4.4164 -1.9167 14 6 5.3097 -4.1799 -1.6559 15 6 5.6400 -4.9429 -2.9425 16 7 5.5201 -6.3838 -2.6818 17 6 6.5557 -7.2331 -2.9673 18 1 7.5760 -6.8960 -2.8593 19 6 6.2941 -8.5273 -3.3955 20 7 5.0977 -8.8428 -3.8442 21 14 7.6401 -9.8212 -3.3349 22 1 7.6024 -10.5136 -2.0217 23 1 7.4256 -10.8098 -4.4220 24 1 8.9622 -9.1689 -3.5127 25 6 4.2681 -6.8963 -2.1085 26 6 3.9530 -6.1114 -0.8313 27 1 4.7179 -6.3135 -0.0815 28 8 2.6759 -6.5099 -0.3292 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.2641 -0.6697 4.4646 37 1 3.7823 -4.2437 0.9360 38 1 5.3010 -3.1092 -1.8600 39 1 6.0621 -4.4003 -0.8988 40 1 6.6588 -4.7114 -3.2533 41 1 4.9416 -4.6543 -3.7281 42 1 4.9149 -9.7472 -4.1438 43 1 4.3816 -7.9536 -1.8691 44 1 3.4567 -6.7691 -2.8251 45 1 2.6164 -7.4491 -0.1066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090633333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -49.819743 kcal Electronic energy + Delta-G solvation = -27803.524761 eV Core-core repulsion = 23947.207501 eV Total energy + Delta-G solvation = -3856.317261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68212 -40.66917 -39.27600 -36.90877 -36.09305 -35.61281 -34.04777 -31.98643 -30.85840 -30.39750 -28.05407 -27.40041 -26.51633 -24.43798 -23.72331 -23.13279 -22.30766 -21.40360 -20.39387 -18.96720 -18.83249 -18.14300 -17.91519 -17.27583 -16.78084 -16.45901 -16.22865 -15.68702 -15.60012 -15.38961 -15.24950 -15.18436 -14.96457 -14.63496 -14.43323 -13.88400 -13.82035 -13.58191 -13.40024 -13.35198 -13.08910 -13.01625 -12.67652 -12.57593 -12.18517 -12.14865 -12.13523 -12.02065 -11.92118 -11.87613 -11.34712 -11.07233 -10.97817 -10.65514 -10.60905 -10.58979 -10.16201 -9.86257 -8.70721 -7.92623 -5.45454 -0.78163 0.18186 0.56475 1.39362 1.48124 1.49620 1.58824 1.94295 2.07705 2.48468 3.07374 3.15504 3.24808 3.61148 3.65811 3.84883 3.92400 4.01956 4.03312 4.23100 4.27423 4.31848 4.38208 4.42542 4.51553 4.65508 4.78053 4.82464 4.85472 4.91183 4.93225 5.01182 5.04053 5.11762 5.16876 5.27733 5.29884 5.33016 5.50001 5.53624 5.64580 6.32936 6.35693 6.58930 6.79770 7.04246 7.09470 7.74733 8.31677 9.13707 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.002732 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.209394 B =10244.659314 C =10676.336159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.150 3.850 5 N -0.492 5.492 6 C 0.049 3.951 7 S 0.209 5.791 8 C -0.327 4.327 9 C 0.594 3.406 10 O -0.557 6.557 11 N -0.698 5.698 12 C 0.171 3.829 13 H 0.062 0.938 14 C -0.123 4.123 15 C 0.143 3.857 16 N -0.602 5.602 17 C -0.272 4.272 18 H 0.069 0.931 19 C -0.040 4.040 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.268 1.268 25 C 0.162 3.838 26 C 0.092 3.908 27 H 0.068 0.932 28 O -0.574 6.574 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.249 0.751 37 H 0.407 0.593 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.009 0.991 42 H 0.252 0.748 43 H 0.061 0.939 44 H -0.002 1.002 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 14.738 18.099 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C -0.185 4.185 4 C 0.011 3.989 5 N -0.205 5.205 6 C -0.246 4.246 7 S 0.465 5.535 8 C -0.451 4.451 9 C 0.381 3.619 10 O -0.438 6.438 11 N -0.348 5.348 12 C 0.067 3.933 13 H 0.080 0.920 14 C -0.163 4.163 15 C 0.017 3.983 16 N -0.327 5.327 17 C -0.402 4.402 18 H 0.087 0.913 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.193 1.193 25 C 0.035 3.965 26 C 0.031 3.969 27 H 0.086 0.914 28 O -0.381 6.381 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.264 0.736 37 H 0.243 0.757 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.016 0.984 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.309 15.164 17.863 24.025 hybrid contribution 0.308 -1.400 -0.773 1.628 sum -5.001 13.764 17.090 22.506 Atomic orbital electron populations 1.21675 0.92934 1.01222 1.02877 1.20394 0.97093 0.96965 0.93465 1.21657 1.00258 0.93791 1.02822 1.20781 0.93572 0.90531 0.93983 1.66098 1.22468 1.33463 0.98491 1.29523 0.96541 0.93700 1.04821 1.83762 1.51158 1.23845 0.94689 1.25407 1.16790 1.04120 0.98808 1.17000 0.76668 0.80970 0.87292 1.90695 1.55536 1.68991 1.28562 1.45782 1.62096 1.16859 1.10066 1.20736 0.96998 0.89019 0.86586 0.92025 1.22222 0.95367 0.99824 0.98917 1.21031 0.99417 0.83892 0.93974 1.44175 1.14042 1.02557 1.71916 1.19468 0.87716 0.93862 1.39181 0.91290 1.25977 0.98770 1.01451 0.97508 1.70194 1.23139 1.19316 1.44855 0.85262 0.79331 0.78733 0.77050 1.20615 1.22408 1.19259 1.21110 0.87187 0.97111 0.91085 1.22559 0.85068 0.92940 0.96296 0.91373 1.86403 1.33435 1.32094 1.86145 0.91743 0.90748 0.94233 0.88054 0.93768 0.90942 0.91647 0.73554 0.75743 0.90975 0.90623 0.91481 0.97297 0.93870 0.92094 0.98384 0.75732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.17 71.98 0.66 -2.19 16 2 C -0.06 -1.47 3.15 -11.54 -0.04 -1.51 16 3 C -0.13 -2.68 9.08 71.98 0.65 -2.03 16 4 C 0.15 3.75 5.40 42.10 0.23 3.97 16 5 N -0.49 -10.16 10.26 -190.40 -1.95 -12.11 16 6 C 0.05 0.65 12.22 130.60 1.60 2.25 16 7 S 0.21 3.22 22.37 -56.49 -1.26 1.96 16 8 C -0.33 -8.28 6.47 23.88 0.15 -8.13 16 9 C 0.59 18.64 7.73 86.45 0.67 19.31 16 10 O -0.56 -21.04 13.69 -4.31 -0.06 -21.10 16 11 N -0.70 -20.55 4.91 -446.36 -2.19 -22.75 16 12 C 0.17 6.05 2.12 45.02 0.10 6.14 16 13 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 14 C -0.12 -4.29 5.65 30.67 0.17 -4.12 16 15 C 0.14 6.01 6.52 86.36 0.56 6.57 16 16 N -0.60 -29.37 2.96 -699.12 -2.07 -31.43 16 17 C -0.27 -14.39 9.51 84.03 0.80 -13.59 16 18 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 19 C -0.04 -2.16 4.87 84.86 0.41 -1.75 16 20 N -0.93 -53.50 11.62 21.65 0.25 -53.25 16 21 Si 0.97 42.88 29.59 68.60 2.03 44.91 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.16 7.48 4.90 86.36 0.42 7.91 16 26 C 0.09 3.30 3.14 30.67 0.10 3.40 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 O -0.57 -18.49 13.16 -148.98 -1.96 -20.45 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 3.14 4.96 -2.39 -0.01 3.12 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 36 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.41 9.89 7.81 -92.71 -0.72 9.17 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 41 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 43 H 0.06 3.05 6.50 -2.39 -0.02 3.04 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.39 9.79 9.08 -74.06 -0.67 9.12 16 Total: -1.00 -69.68 377.43 -1.10 -70.78 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.37 Total: 27.19 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.49 Total: 16.25 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -5.96 Total: -119.54 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.02 Total: -41.55 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.26 Total: 1.96 kcal Total: -69.68 -1.10 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds