Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00688 * 2 1 3 5 5 N 1.30949 * 122.90205 * 293.88276 * 4 2 1 6 6 C 1.29423 * 117.36160 * 180.34810 * 5 4 2 7 7 S 1.70950 * 110.39421 * 359.71063 * 6 5 4 8 8 C 1.35655 * 122.90659 * 113.69313 * 4 2 1 9 9 C 1.46682 * 126.13247 * 359.96310 * 8 4 2 10 10 O 1.21685 * 119.99934 * 6.19602 * 9 8 4 11 11 N 1.34770 * 120.00401 * 186.18939 * 9 8 4 12 12 C 1.46503 * 120.00493 * 179.72242 * 11 9 8 13 13 H 1.08999 * 109.45657 * 325.28344 * 12 11 9 14 14 C 1.53041 * 109.45649 * 85.24975 * 12 11 9 15 15 C 1.53193 * 109.31264 * 58.66165 * 14 12 11 16 16 N 1.46924 * 108.77567 * 54.62890 * 15 14 12 17 17 C 1.36941 * 120.62897 * 126.36925 * 16 15 14 18 18 H 1.07995 * 119.99960 * 325.23299 * 17 16 15 19 19 C 1.38816 * 119.99844 * 145.22527 * 17 16 15 20 20 N 1.31615 * 120.00110 * 346.45922 * 19 17 16 21 21 Si 1.86802 * 119.99725 * 166.45699 * 19 17 16 22 22 H 1.48499 * 109.47112 * 90.00118 * 21 19 17 23 23 H 1.48506 * 109.46937 * 210.00268 * 21 19 17 24 24 H 1.48503 * 109.47421 * 330.00048 * 21 19 17 25 25 C 1.46928 * 118.74319 * 306.39699 * 16 15 14 26 26 C 1.53039 * 109.46586 * 205.30587 * 12 11 9 27 27 H 1.08990 * 109.50056 * 181.39445 * 26 12 11 28 28 O 1.42906 * 109.49213 * 61.29484 * 26 12 11 29 29 H 1.09003 * 109.47100 * 299.99667 * 1 2 3 30 30 H 1.08995 * 109.47412 * 59.99300 * 1 2 3 31 31 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46650 * 240.00160 * 2 1 3 33 33 H 1.09000 * 109.46849 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47111 * 300.00314 * 3 2 1 35 35 H 1.08991 * 109.46910 * 60.00598 * 3 2 1 36 36 H 1.08005 * 124.80515 * 179.73130 * 6 5 4 37 37 H 0.97008 * 120.00193 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.49667 * 178.60827 * 14 12 11 39 39 H 1.08996 * 109.50332 * 298.67253 * 14 12 11 40 40 H 1.08995 * 109.58771 * 174.41746 * 15 14 12 41 41 H 1.08998 * 109.58616 * 294.84618 * 15 14 12 42 42 H 0.96998 * 120.00006 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58701 * 173.39328 * 25 16 15 44 44 H 1.08999 * 109.57916 * 293.67300 * 25 16 15 45 45 H 0.96705 * 113.99346 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.8499 -0.2496 2.4423 6 6 2.3330 -0.9439 3.4219 7 16 3.1095 -2.3476 2.8310 8 6 2.7095 -1.8848 1.1784 9 6 3.0529 -2.6322 -0.0362 10 8 2.8250 -2.1521 -1.1308 11 7 3.6209 -3.8506 0.0602 12 6 3.9582 -4.5997 -1.1528 13 1 3.2124 -4.3998 -1.9221 14 6 5.3371 -4.1641 -1.6540 15 6 6.3771 -4.4147 -0.5575 16 7 6.3015 -5.8234 -0.1470 17 6 7.4208 -6.6123 -0.1510 18 1 8.1785 -6.4708 -0.9075 19 6 7.5816 -7.5938 0.8174 20 7 6.8106 -7.5984 1.8840 21 14 8.8924 -8.9079 0.6066 22 1 10.1621 -8.4437 1.2209 23 1 8.4495 -10.1599 1.2712 24 1 9.1075 -9.1650 -0.8402 25 6 5.0021 -6.3698 0.2673 26 6 3.9779 -6.0973 -0.8384 27 1 4.2530 -6.6536 -1.7344 28 8 2.6818 -6.5094 -0.3995 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 2.2562 -0.6748 4.4651 37 1 3.8023 -4.2335 0.9328 38 1 5.5994 -4.7386 -2.5423 39 1 5.3160 -3.1025 -1.9004 40 1 7.3736 -4.1994 -0.9430 41 1 6.1677 -3.7730 0.2983 42 1 6.9228 -8.2845 2.5605 43 1 5.0914 -7.4445 0.4259 44 1 4.6818 -5.8894 1.1917 45 1 2.6207 -7.4499 -0.1826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090633334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -24.935988 kcal Electronic energy + Delta-G solvation = -28346.157377 eV Core-core repulsion = 24490.919156 eV Total energy + Delta-G solvation = -3855.238220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55689 -39.49586 -37.77042 -35.35050 -34.87978 -34.09287 -32.15462 -30.58756 -29.44251 -28.85706 -27.11761 -26.00088 -25.26263 -22.91021 -22.27196 -21.89223 -21.44633 -19.47032 -18.92106 -17.82597 -17.18273 -16.73303 -16.53473 -15.81404 -15.33152 -15.01445 -14.84141 -14.40345 -14.29283 -14.21893 -14.03730 -13.77272 -13.58625 -13.36507 -12.88281 -12.80548 -12.37123 -12.31165 -12.12543 -11.94015 -11.73335 -11.23520 -11.16547 -11.08623 -10.99187 -10.87790 -10.85402 -10.49202 -10.30389 -10.10295 -9.97586 -9.68780 -9.57159 -9.47661 -9.37006 -8.94828 -8.73711 -8.61377 -6.74146 -5.94970 -3.45679 0.23183 1.17160 1.55621 2.44898 3.27466 3.28504 3.34517 3.35591 3.37378 4.06235 4.34821 4.52339 4.78334 4.88904 5.01021 5.20628 5.21202 5.28518 5.34683 5.39788 5.47705 5.62327 5.66427 5.76400 5.83589 5.86200 5.86794 5.96409 5.97762 6.11521 6.17366 6.25050 6.34038 6.39377 6.50561 6.68562 6.74246 6.86517 6.96747 7.28456 7.51858 7.67817 7.72171 8.02785 8.33095 8.34638 9.04730 9.65249 10.25300 11.13098 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.003306 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.860540 B = 8467.868659 C = 8986.010674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C -0.135 4.135 4 C 0.147 3.853 5 N -0.470 5.470 6 C 0.024 3.976 7 S 0.177 5.823 8 C -0.287 4.287 9 C 0.597 3.403 10 O -0.532 6.532 11 N -0.696 5.696 12 C 0.166 3.834 13 H 0.083 0.917 14 C -0.145 4.145 15 C 0.145 3.855 16 N -0.585 5.585 17 C -0.262 4.262 18 H 0.065 0.935 19 C 0.011 3.989 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.149 3.851 26 C 0.066 3.934 27 H 0.065 0.935 28 O -0.573 6.573 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.204 0.796 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.025 0.975 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 10.525 0.683 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.193 4.193 4 C 0.009 3.991 5 N -0.184 5.184 6 C -0.272 4.272 7 S 0.433 5.567 8 C -0.412 4.412 9 C 0.382 3.618 10 O -0.412 6.412 11 N -0.346 5.346 12 C 0.062 3.938 13 H 0.101 0.899 14 C -0.186 4.186 15 C 0.019 3.981 16 N -0.310 5.310 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.189 4.189 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.023 3.977 26 C 0.005 3.995 27 H 0.083 0.917 28 O -0.378 6.378 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.220 0.780 37 H 0.240 0.760 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.069 10.974 0.646 14.907 hybrid contribution 0.665 -1.156 0.182 1.346 sum -9.404 9.817 0.827 13.620 Atomic orbital electron populations 1.21727 0.93972 1.01768 1.01879 1.20393 0.96160 0.96184 0.94246 1.21719 1.00892 0.94816 1.01896 1.20644 0.94469 0.90790 0.93243 1.66040 1.21234 1.32511 0.98610 1.28696 0.99449 0.95465 1.03550 1.84362 1.50636 1.23938 0.97813 1.25617 1.14201 1.03558 0.97775 1.16634 0.77394 0.81118 0.86667 1.90659 1.55381 1.68265 1.26928 1.45922 1.60881 1.16963 1.10866 1.20887 0.97090 0.89406 0.86453 0.89915 1.22422 0.94829 1.00878 1.00423 1.20946 0.96418 0.86870 0.93912 1.43869 1.04110 1.04936 1.78053 1.19121 0.98892 1.13046 1.08082 0.91748 1.25238 0.98152 1.00973 0.94498 1.69986 1.40985 1.34600 1.08640 0.86304 0.81450 0.81200 0.77822 1.21179 1.21503 1.20308 1.21308 0.83778 1.00691 0.91957 1.22953 0.83805 0.93256 0.99499 0.91727 1.86423 1.31695 1.30407 1.89232 0.92435 0.92065 0.92937 0.85515 0.92967 0.92222 0.92210 0.77979 0.76041 0.90910 0.91572 0.92312 0.96355 0.93452 0.89815 0.95735 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 2 C -0.05 -0.66 3.15 -91.77 -0.29 -0.95 16 3 C -0.14 -1.57 9.09 37.16 0.34 -1.23 16 4 C 0.15 2.10 5.39 -83.89 -0.45 1.65 16 5 N -0.47 -6.15 10.28 -11.53 -0.12 -6.27 16 6 C 0.02 0.25 12.22 51.75 0.63 0.88 16 7 S 0.18 2.16 22.38 -107.50 -2.41 -0.25 16 8 C -0.29 -4.32 6.47 -37.10 -0.24 -4.56 16 9 C 0.60 10.14 7.74 -12.85 -0.10 10.04 16 10 O -0.53 -9.85 13.68 5.20 0.07 -9.78 16 11 N -0.70 -11.87 4.15 -55.07 -0.23 -12.09 16 12 C 0.17 2.91 2.47 -67.89 -0.17 2.74 16 13 H 0.08 1.49 7.57 -51.93 -0.39 1.09 16 14 C -0.15 -2.54 5.77 -26.61 -0.15 -2.69 16 15 C 0.14 2.91 6.26 -3.71 -0.02 2.89 16 16 N -0.59 -13.52 2.96 -172.34 -0.51 -14.03 16 17 C -0.26 -6.73 9.52 -15.06 -0.14 -6.88 16 18 H 0.06 1.64 7.86 -52.49 -0.41 1.23 16 19 C 0.01 0.29 4.95 -17.43 -0.09 0.21 16 20 N -0.90 -24.29 11.50 55.49 0.64 -23.65 16 21 Si 0.90 20.50 29.57 -169.99 -5.03 15.47 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 C 0.15 3.19 4.57 -3.73 -0.02 3.17 16 26 C 0.07 1.18 3.36 -26.63 -0.09 1.09 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 O -0.57 -9.44 13.21 -35.23 -0.47 -9.91 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.13 1.94 4.96 -51.93 -0.26 1.68 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 36 H 0.20 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.40 6.97 6.08 -40.82 -0.25 6.72 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.08 1.98 6.48 -51.93 -0.34 1.65 16 44 H 0.02 0.55 6.65 -51.93 -0.35 0.21 16 45 H 0.38 4.88 9.08 45.56 0.41 5.30 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -29.86 373.12 -8.63 -38.49 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.75 Total: 11.27 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.45 Total: 5.13 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.22 Total: -56.04 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.39 Total: -19.69 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.41 Total: -0.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.86 -8.63 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.550 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds