Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00688 * 2 1 3 5 5 N 1.30949 * 122.90205 * 293.88276 * 4 2 1 6 6 C 1.29423 * 117.36160 * 180.34810 * 5 4 2 7 7 S 1.70950 * 110.39421 * 359.71063 * 6 5 4 8 8 C 1.35655 * 122.90659 * 113.69313 * 4 2 1 9 9 C 1.46682 * 126.13247 * 359.96310 * 8 4 2 10 10 O 1.21685 * 119.99934 * 6.19602 * 9 8 4 11 11 N 1.34770 * 120.00401 * 186.18939 * 9 8 4 12 12 C 1.46503 * 120.00493 * 179.72242 * 11 9 8 13 13 H 1.08999 * 109.45657 * 325.28344 * 12 11 9 14 14 C 1.53041 * 109.45649 * 85.24975 * 12 11 9 15 15 C 1.53193 * 109.31264 * 58.66165 * 14 12 11 16 16 N 1.46924 * 108.77567 * 54.62890 * 15 14 12 17 17 C 1.36941 * 120.62897 * 126.36925 * 16 15 14 18 18 H 1.07995 * 119.99960 * 325.23299 * 17 16 15 19 19 C 1.38816 * 119.99844 * 145.22527 * 17 16 15 20 20 N 1.31615 * 120.00110 * 346.45922 * 19 17 16 21 21 Si 1.86802 * 119.99725 * 166.45699 * 19 17 16 22 22 H 1.48499 * 109.47112 * 90.00118 * 21 19 17 23 23 H 1.48506 * 109.46937 * 210.00268 * 21 19 17 24 24 H 1.48503 * 109.47421 * 330.00048 * 21 19 17 25 25 C 1.46928 * 118.74319 * 306.39699 * 16 15 14 26 26 C 1.53039 * 109.46586 * 205.30587 * 12 11 9 27 27 H 1.08990 * 109.50056 * 181.39445 * 26 12 11 28 28 O 1.42906 * 109.49213 * 61.29484 * 26 12 11 29 29 H 1.09003 * 109.47100 * 299.99667 * 1 2 3 30 30 H 1.08995 * 109.47412 * 59.99300 * 1 2 3 31 31 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46650 * 240.00160 * 2 1 3 33 33 H 1.09000 * 109.46849 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47111 * 300.00314 * 3 2 1 35 35 H 1.08991 * 109.46910 * 60.00598 * 3 2 1 36 36 H 1.08005 * 124.80515 * 179.73130 * 6 5 4 37 37 H 0.97008 * 120.00193 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.49667 * 178.60827 * 14 12 11 39 39 H 1.08996 * 109.50332 * 298.67253 * 14 12 11 40 40 H 1.08995 * 109.58771 * 174.41746 * 15 14 12 41 41 H 1.08998 * 109.58616 * 294.84618 * 15 14 12 42 42 H 0.96998 * 120.00006 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58701 * 173.39328 * 25 16 15 44 44 H 1.08999 * 109.57916 * 293.67300 * 25 16 15 45 45 H 0.96705 * 113.99346 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.8499 -0.2496 2.4423 6 6 2.3330 -0.9439 3.4219 7 16 3.1095 -2.3476 2.8310 8 6 2.7095 -1.8848 1.1784 9 6 3.0529 -2.6322 -0.0362 10 8 2.8250 -2.1521 -1.1308 11 7 3.6209 -3.8506 0.0602 12 6 3.9582 -4.5997 -1.1528 13 1 3.2124 -4.3998 -1.9221 14 6 5.3371 -4.1641 -1.6540 15 6 6.3771 -4.4147 -0.5575 16 7 6.3015 -5.8234 -0.1470 17 6 7.4208 -6.6123 -0.1510 18 1 8.1785 -6.4708 -0.9075 19 6 7.5816 -7.5938 0.8174 20 7 6.8106 -7.5984 1.8840 21 14 8.8924 -8.9079 0.6066 22 1 10.1621 -8.4437 1.2209 23 1 8.4495 -10.1599 1.2712 24 1 9.1075 -9.1650 -0.8402 25 6 5.0021 -6.3698 0.2673 26 6 3.9779 -6.0973 -0.8384 27 1 4.2530 -6.6536 -1.7344 28 8 2.6818 -6.5094 -0.3995 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 2.2562 -0.6748 4.4651 37 1 3.8023 -4.2335 0.9328 38 1 5.5994 -4.7386 -2.5423 39 1 5.3160 -3.1025 -1.9004 40 1 7.3736 -4.1994 -0.9430 41 1 6.1677 -3.7730 0.2983 42 1 6.9228 -8.2845 2.5605 43 1 5.0914 -7.4445 0.4259 44 1 4.6818 -5.8894 1.1917 45 1 2.6207 -7.4499 -0.1826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090633334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -45.796165 kcal Electronic energy + Delta-G solvation = -28347.061942 eV Core-core repulsion = 24490.919156 eV Total energy + Delta-G solvation = -3856.142785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71271 -40.77453 -39.19302 -36.86935 -35.97777 -35.53329 -33.81548 -32.00078 -30.90685 -30.34564 -28.03314 -27.37309 -26.71308 -24.31961 -23.66899 -23.36272 -22.67243 -20.64947 -20.42542 -18.92569 -18.79134 -18.11057 -17.90607 -17.09761 -16.77043 -16.51981 -16.04634 -15.83585 -15.61151 -15.46428 -15.32252 -15.19753 -14.89489 -14.65144 -14.40370 -13.87169 -13.80467 -13.59636 -13.33866 -13.25216 -12.99536 -12.87887 -12.75765 -12.66426 -12.21581 -12.12338 -12.10206 -12.01194 -11.88450 -11.85061 -11.25018 -11.05419 -10.95564 -10.64640 -10.60126 -10.59053 -10.13172 -9.88220 -8.62499 -7.90648 -5.44264 -0.78228 0.18123 0.58259 1.38924 1.47377 1.50232 1.58467 2.03001 2.08773 2.49029 3.11072 3.14879 3.26883 3.63932 3.67890 3.86349 3.95019 4.02711 4.11470 4.23980 4.24928 4.32954 4.34471 4.44112 4.53085 4.67958 4.80224 4.83920 4.87193 4.94206 4.95103 5.02753 5.07118 5.13239 5.18338 5.26503 5.32447 5.39603 5.53881 5.56497 5.65913 6.33480 6.38341 6.56453 6.81167 7.03013 7.13018 7.77306 8.33704 9.14637 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.003306 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.860540 B = 8467.868659 C = 8986.010674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.128 4.128 4 C 0.151 3.849 5 N -0.488 5.488 6 C 0.051 3.949 7 S 0.180 5.820 8 C -0.325 4.325 9 C 0.596 3.404 10 O -0.553 6.553 11 N -0.697 5.697 12 C 0.168 3.832 13 H 0.083 0.917 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.599 5.599 17 C -0.272 4.272 18 H 0.063 0.937 19 C -0.034 4.034 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.271 1.271 25 C 0.162 3.838 26 C 0.083 3.917 27 H 0.069 0.931 28 O -0.574 6.574 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.009 0.991 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 11.355 1.006 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.201 5.201 6 C -0.243 4.243 7 S 0.437 5.563 8 C -0.449 4.449 9 C 0.383 3.617 10 O -0.435 6.435 11 N -0.347 5.347 12 C 0.063 3.937 13 H 0.101 0.899 14 C -0.172 4.172 15 C 0.021 3.979 16 N -0.324 5.324 17 C -0.402 4.402 18 H 0.081 0.919 19 C -0.231 4.231 20 N -0.570 5.570 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.196 1.196 25 C 0.035 3.965 26 C 0.022 3.978 27 H 0.087 0.913 28 O -0.381 6.381 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.264 0.736 37 H 0.237 0.763 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.644 11.800 0.958 15.920 hybrid contribution 0.809 -1.352 0.166 1.584 sum -9.834 10.449 1.124 14.393 Atomic orbital electron populations 1.21675 0.92720 1.01305 1.02938 1.20413 0.97203 0.96828 0.93167 1.21665 1.00189 0.93825 1.02908 1.20872 0.93467 0.90360 0.94107 1.66115 1.22462 1.33023 0.98501 1.29489 0.96322 0.93616 1.04898 1.84366 1.50925 1.24796 0.96242 1.25460 1.16590 1.04455 0.98371 1.16881 0.76749 0.80880 0.87216 1.90643 1.56215 1.68675 1.27979 1.45898 1.61183 1.17166 1.10473 1.20832 0.96969 0.89120 0.86769 0.89935 1.22268 0.93914 1.01419 0.99577 1.20975 0.97289 0.85260 0.94394 1.44061 1.04174 1.05983 1.78208 1.19392 0.99586 1.13412 1.07858 0.91895 1.25883 1.00101 1.02784 0.94349 1.70111 1.42434 1.35138 1.09268 0.85358 0.78999 0.78661 0.77842 1.21327 1.21772 1.19588 1.21110 0.84106 0.98670 0.92576 1.22619 0.83375 0.93731 0.98069 0.91296 1.86405 1.30512 1.32054 1.89136 0.91947 0.90386 0.94126 0.87658 0.93965 0.90540 0.91816 0.73619 0.76276 0.90096 0.90876 0.92427 0.97053 0.93859 0.92414 0.97311 0.75831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.18 71.98 0.66 -2.19 16 2 C -0.06 -1.44 3.15 -11.54 -0.04 -1.48 16 3 C -0.13 -2.81 9.09 71.98 0.65 -2.15 16 4 C 0.15 4.19 5.39 42.09 0.23 4.42 16 5 N -0.49 -11.79 10.28 -190.41 -1.96 -13.75 16 6 C 0.05 0.96 12.22 130.60 1.60 2.56 16 7 S 0.18 4.21 22.38 -56.49 -1.26 2.95 16 8 C -0.32 -9.68 6.47 23.88 0.15 -9.52 16 9 C 0.60 20.40 7.74 86.45 0.67 21.07 16 10 O -0.55 -20.71 13.68 -4.30 -0.06 -20.77 16 11 N -0.70 -23.87 4.15 -446.38 -1.85 -25.72 16 12 C 0.17 5.81 2.47 45.02 0.11 5.92 16 13 H 0.08 2.91 7.57 -2.39 -0.02 2.90 16 14 C -0.13 -4.52 5.77 30.67 0.18 -4.35 16 15 C 0.15 5.88 6.26 86.36 0.54 6.42 16 16 N -0.60 -27.87 2.96 -699.17 -2.07 -29.94 16 17 C -0.27 -14.05 9.52 84.03 0.80 -13.25 16 18 H 0.06 3.21 7.86 -2.91 -0.02 3.18 16 19 C -0.03 -1.77 4.95 84.86 0.42 -1.35 16 20 N -0.93 -50.61 11.50 21.65 0.25 -50.36 16 21 Si 0.96 42.23 29.57 68.60 2.03 44.26 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 C 0.16 6.99 4.57 86.35 0.39 7.38 16 26 C 0.08 2.94 3.36 30.66 0.10 3.04 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 O -0.57 -18.49 13.21 -148.98 -1.97 -20.46 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.11 3.24 4.96 -2.39 -0.01 3.23 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.33 8.06 -2.39 -0.02 1.32 16 36 H 0.25 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.40 14.03 6.08 -92.70 -0.56 13.47 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 41 H 0.01 0.48 7.74 -2.39 -0.02 0.46 16 42 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 43 H 0.06 2.79 6.48 -2.39 -0.02 2.77 16 44 H 0.01 0.41 6.65 -2.39 -0.02 0.40 16 45 H 0.39 9.83 9.08 -74.05 -0.67 9.16 16 Total: -1.00 -63.93 373.12 -0.62 -64.55 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.21 Total: 32.70 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.47 Total: 16.53 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.63 Total: -119.77 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.03 Total: -41.22 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.26 Total: 2.95 kcal Total: -63.93 -0.62 -64.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -63.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds