Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47448 * 2 1 4 4 C 1.50706 * 109.46996 * 119.99541 * 2 1 3 5 5 S 1.70933 * 125.59045 * 293.04739 * 4 2 1 6 6 C 1.70765 * 91.13114 * 179.97438 * 5 4 2 7 7 N 1.28645 * 110.55960 * 0.35120 * 6 5 4 8 8 C 1.33558 * 115.76857 * 359.72956 * 7 6 5 9 9 C 1.47265 * 123.14582 * 179.97438 * 8 7 6 10 10 O 1.21636 * 119.99905 * 184.57354 * 9 8 7 11 11 N 1.34777 * 119.99842 * 4.57755 * 9 8 7 12 12 C 1.46499 * 120.00123 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45919 * 35.02130 * 12 11 9 14 14 C 1.53042 * 109.45590 * 275.06873 * 12 11 9 15 15 C 1.53190 * 109.30985 * 178.61493 * 14 12 11 16 16 N 1.46923 * 108.78036 * 54.62892 * 15 14 12 17 17 C 1.36941 * 120.63131 * 126.41069 * 16 15 14 18 18 H 1.07997 * 120.00240 * 216.57230 * 17 16 15 19 19 C 1.38808 * 119.99714 * 36.57424 * 17 16 15 20 20 N 1.31614 * 120.00290 * 14.05399 * 19 17 16 21 21 Si 1.86806 * 119.99735 * 194.05714 * 19 17 16 22 22 H 1.48495 * 109.47528 * 89.99967 * 21 19 17 23 23 H 1.48501 * 109.47081 * 209.99988 * 21 19 17 24 24 H 1.48505 * 109.46948 * 329.99436 * 21 19 17 25 25 C 1.46925 * 118.74163 * 306.39664 * 16 15 14 26 26 C 1.53031 * 109.46240 * 154.99475 * 12 11 9 27 27 H 1.09008 * 109.49650 * 61.40201 * 26 12 11 28 28 O 1.42899 * 109.50044 * 301.33849 * 26 12 11 29 29 H 1.08999 * 109.47073 * 300.00389 * 1 2 3 30 30 H 1.08997 * 109.47034 * 59.99884 * 1 2 3 31 31 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47517 * 239.99594 * 2 1 3 33 33 H 1.08998 * 109.46699 * 59.99293 * 3 2 1 34 34 H 1.08992 * 109.47329 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46595 * 299.99918 * 3 2 1 36 36 H 1.08002 * 124.72157 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00115 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.49316 * 298.55876 * 14 12 11 39 39 H 1.08993 * 109.50044 * 58.66102 * 14 12 11 40 40 H 1.09003 * 109.58794 * 294.84348 * 15 14 12 41 41 H 1.08996 * 109.59097 * 174.42147 * 15 14 12 42 42 H 0.97007 * 119.99975 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.58243 * 293.82004 * 25 16 15 44 44 H 1.08996 * 109.70622 * 173.45963 * 25 16 15 45 45 H 0.96700 * 114.00128 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 16 1.8508 -0.1622 2.8394 6 6 2.6761 -1.5332 3.4355 7 7 3.0402 -2.2977 2.4671 8 6 2.7066 -1.8823 1.2424 9 6 3.0421 -2.6305 0.0191 10 8 2.7838 -2.1592 -1.0721 11 7 3.6355 -3.8373 0.1087 12 6 3.9698 -4.5813 -1.1082 13 1 4.2653 -3.8829 -1.8912 14 6 2.7476 -5.3779 -1.5707 15 6 3.0903 -6.1272 -2.8621 16 7 4.2904 -6.9429 -2.6315 17 6 4.2856 -8.2844 -2.9064 18 1 4.8265 -8.9682 -2.2690 19 6 3.5855 -8.7654 -4.0043 20 7 3.1615 -7.9324 -4.9309 21 14 3.2450 -10.5949 -4.1665 22 1 1.9512 -10.9176 -3.5130 23 1 3.1781 -10.9604 -5.6043 24 1 4.3353 -11.3613 -3.5112 25 6 5.4958 -6.2919 -2.1007 26 6 5.1262 -5.5407 -0.8177 27 1 4.8228 -6.2548 -0.0520 28 8 6.2571 -4.7988 -0.3567 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 2.8703 -1.7285 4.4798 37 1 3.8418 -4.2129 0.9789 38 1 2.4666 -6.0939 -0.7984 39 1 1.9174 -4.6961 -1.7549 40 1 3.2837 -5.4103 -3.6602 41 1 2.2579 -6.7728 -3.1420 42 1 2.6720 -8.2685 -5.6980 43 1 5.8853 -5.5884 -2.8366 44 1 6.2523 -7.0444 -1.8784 45 1 7.0291 -5.3444 -0.1532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090718849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -29.801411 kcal Electronic energy + Delta-G solvation = -27840.262866 eV Core-core repulsion = 23984.813665 eV Total energy + Delta-G solvation = -3855.449201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68234 -39.01132 -37.69696 -35.94643 -35.34716 -34.20405 -31.96168 -30.31792 -29.64481 -28.57194 -27.36053 -26.14403 -24.87971 -22.96905 -22.23895 -21.69908 -21.35462 -19.91715 -19.23300 -18.13005 -17.18628 -16.76386 -16.37101 -15.89748 -15.51602 -15.35754 -14.81966 -14.45216 -14.15929 -13.96414 -13.94747 -13.89588 -13.50598 -13.25264 -13.16470 -12.76698 -12.44509 -12.26923 -12.21387 -12.04244 -11.68327 -11.54476 -11.43361 -11.27693 -11.09427 -10.87552 -10.63274 -10.35685 -10.25559 -10.01676 -10.00213 -9.72675 -9.65054 -9.62070 -9.34156 -9.15026 -8.68015 -8.46514 -6.64108 -5.85325 -3.38756 0.37357 1.02919 1.44452 1.93672 3.33941 3.41090 3.42175 3.42715 3.46423 4.00158 4.38611 4.47664 4.54861 4.69332 4.88007 4.95793 5.20152 5.30768 5.34016 5.36850 5.39528 5.49866 5.58409 5.60327 5.68323 5.74665 5.80864 5.89370 5.99192 6.04651 6.11394 6.19431 6.40651 6.52541 6.55416 6.68109 6.81356 6.88991 7.21883 7.24782 7.54067 7.75578 7.80960 7.96940 8.41976 8.43663 9.14273 9.73835 10.35683 11.22692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.002736 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.606242 B =10229.831266 C =10788.721994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.167 4.167 5 S 0.190 5.810 6 C -0.009 4.009 7 N -0.435 5.435 8 C -0.001 4.001 9 C 0.593 3.407 10 O -0.533 6.533 11 N -0.695 5.695 12 C 0.162 3.838 13 H 0.090 0.910 14 C -0.147 4.147 15 C 0.177 3.823 16 N -0.586 5.586 17 C -0.267 4.267 18 H 0.063 0.937 19 C 0.014 3.986 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.122 3.878 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.570 6.570 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.203 0.797 37 H 0.405 0.595 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.080 0.920 42 H 0.256 0.744 43 H 0.029 0.971 44 H 0.060 0.940 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 16.754 16.872 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.291 4.291 5 S 0.446 5.554 6 C -0.309 4.309 7 N -0.149 5.149 8 C -0.136 4.136 9 C 0.376 3.624 10 O -0.411 6.411 11 N -0.343 5.343 12 C 0.059 3.941 13 H 0.108 0.892 14 C -0.187 4.187 15 C 0.051 3.949 16 N -0.310 5.310 17 C -0.396 4.396 18 H 0.080 0.920 19 C -0.187 4.187 20 N -0.536 5.536 21 Si 0.733 3.267 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.006 4.006 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.375 6.375 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.219 0.781 37 H 0.240 0.760 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.601 17.844 16.453 24.537 hybrid contribution 0.542 -2.205 -0.143 2.275 sum -3.060 15.639 16.309 22.802 Atomic orbital electron populations 1.21857 0.93646 1.02365 1.01960 1.20332 0.96048 0.95783 0.95184 1.21905 1.01549 0.94595 1.02051 1.25685 1.03079 0.99082 1.01234 1.82741 1.51678 1.24433 0.96592 1.28295 1.03312 0.95688 1.03574 1.66947 1.19157 1.30690 0.98132 1.20459 1.04617 0.96041 0.92446 1.16999 0.77923 0.81039 0.86397 1.90661 1.54825 1.68391 1.27265 1.45929 1.59354 1.18207 1.10787 1.21056 0.93891 0.92809 0.86380 0.89244 1.22610 0.96006 0.98654 1.01430 1.20710 0.90623 0.92984 0.90615 1.43922 1.06010 1.05671 1.75360 1.19072 1.32091 0.82183 1.06298 0.91973 1.25299 1.01001 0.97741 0.94612 1.70020 1.39974 1.33752 1.09876 0.86293 0.78416 0.85051 0.76949 1.21234 1.21606 1.20276 1.21547 0.91232 0.95381 0.92421 1.22773 0.85439 0.92206 0.97666 0.92618 1.86490 1.24293 1.38408 1.88269 0.92986 0.91466 0.92259 0.84458 0.92932 0.92295 0.91429 0.78058 0.76006 0.92293 0.91900 0.95511 0.90205 0.93400 0.95308 0.92115 0.78004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.17 37.16 0.34 -1.03 16 2 C -0.05 -0.61 3.11 -91.77 -0.29 -0.90 16 3 C -0.14 -1.32 9.03 37.16 0.34 -0.98 16 4 C -0.17 -2.01 5.04 -35.38 -0.18 -2.18 16 5 S 0.19 1.57 22.39 -107.50 -2.41 -0.84 16 6 C -0.01 -0.08 12.17 51.43 0.63 0.54 16 7 N -0.44 -5.61 10.13 -12.36 -0.13 -5.74 16 8 C 0.00 -0.02 6.70 -84.52 -0.57 -0.59 16 9 C 0.59 10.18 7.75 -12.59 -0.10 10.08 16 10 O -0.53 -10.25 13.52 5.25 0.07 -10.18 16 11 N -0.69 -11.70 4.91 -54.89 -0.27 -11.97 16 12 C 0.16 3.05 2.12 -67.89 -0.14 2.91 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 15 C 0.18 4.24 5.25 -3.71 -0.02 4.22 16 16 N -0.59 -14.49 2.94 -172.32 -0.51 -15.00 16 17 C -0.27 -7.19 9.50 -15.06 -0.14 -7.33 16 18 H 0.06 1.64 7.87 -52.49 -0.41 1.23 16 19 C 0.01 0.39 4.93 -17.43 -0.09 0.30 16 20 N -0.89 -25.83 11.67 55.49 0.65 -25.18 16 21 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.12 2.54 6.14 -3.71 -0.02 2.51 16 26 C 0.08 1.43 3.14 -26.61 -0.08 1.34 16 27 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 28 O -0.57 -9.10 13.16 -35.23 -0.46 -9.57 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.14 2.01 4.96 -51.93 -0.26 1.75 16 33 H 0.05 0.40 7.80 -51.93 -0.40 0.00 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.41 6.32 8.13 -40.82 -0.33 5.99 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 2.10 6.64 -51.93 -0.34 1.76 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.20 7.94 -51.93 -0.41 0.78 16 45 H 0.37 4.33 9.08 45.56 0.41 4.75 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -32.23 377.12 -8.80 -41.03 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.93 Total: 9.63 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.47 Total: 5.82 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.25 Total: -57.89 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.39 Total: -19.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.41 Total: -0.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.23 -8.80 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090718849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.226 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds