Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47448 * 2 1 4 4 C 1.50706 * 109.46996 * 119.99541 * 2 1 3 5 5 S 1.70933 * 125.59045 * 293.04739 * 4 2 1 6 6 C 1.70765 * 91.13114 * 179.97438 * 5 4 2 7 7 N 1.28645 * 110.55960 * 0.35120 * 6 5 4 8 8 C 1.33558 * 115.76857 * 359.72956 * 7 6 5 9 9 C 1.47265 * 123.14582 * 179.97438 * 8 7 6 10 10 O 1.21636 * 119.99905 * 184.57354 * 9 8 7 11 11 N 1.34777 * 119.99842 * 4.57755 * 9 8 7 12 12 C 1.46499 * 120.00123 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45919 * 35.02130 * 12 11 9 14 14 C 1.53042 * 109.45590 * 275.06873 * 12 11 9 15 15 C 1.53190 * 109.30985 * 178.61493 * 14 12 11 16 16 N 1.46923 * 108.78036 * 54.62892 * 15 14 12 17 17 C 1.36941 * 120.63131 * 126.41069 * 16 15 14 18 18 H 1.07997 * 120.00240 * 216.57230 * 17 16 15 19 19 C 1.38808 * 119.99714 * 36.57424 * 17 16 15 20 20 N 1.31614 * 120.00290 * 14.05399 * 19 17 16 21 21 Si 1.86806 * 119.99735 * 194.05714 * 19 17 16 22 22 H 1.48495 * 109.47528 * 89.99967 * 21 19 17 23 23 H 1.48501 * 109.47081 * 209.99988 * 21 19 17 24 24 H 1.48505 * 109.46948 * 329.99436 * 21 19 17 25 25 C 1.46925 * 118.74163 * 306.39664 * 16 15 14 26 26 C 1.53031 * 109.46240 * 154.99475 * 12 11 9 27 27 H 1.09008 * 109.49650 * 61.40201 * 26 12 11 28 28 O 1.42899 * 109.50044 * 301.33849 * 26 12 11 29 29 H 1.08999 * 109.47073 * 300.00389 * 1 2 3 30 30 H 1.08997 * 109.47034 * 59.99884 * 1 2 3 31 31 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47517 * 239.99594 * 2 1 3 33 33 H 1.08998 * 109.46699 * 59.99293 * 3 2 1 34 34 H 1.08992 * 109.47329 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46595 * 299.99918 * 3 2 1 36 36 H 1.08002 * 124.72157 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00115 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.49316 * 298.55876 * 14 12 11 39 39 H 1.08993 * 109.50044 * 58.66102 * 14 12 11 40 40 H 1.09003 * 109.58794 * 294.84348 * 15 14 12 41 41 H 1.08996 * 109.59097 * 174.42147 * 15 14 12 42 42 H 0.97007 * 119.99975 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.58243 * 293.82004 * 25 16 15 44 44 H 1.08996 * 109.70622 * 173.45963 * 25 16 15 45 45 H 0.96700 * 114.00128 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 16 1.8508 -0.1622 2.8394 6 6 2.6761 -1.5332 3.4355 7 7 3.0402 -2.2977 2.4671 8 6 2.7066 -1.8823 1.2424 9 6 3.0421 -2.6305 0.0191 10 8 2.7838 -2.1592 -1.0721 11 7 3.6355 -3.8373 0.1087 12 6 3.9698 -4.5813 -1.1082 13 1 4.2653 -3.8829 -1.8912 14 6 2.7476 -5.3779 -1.5707 15 6 3.0903 -6.1272 -2.8621 16 7 4.2904 -6.9429 -2.6315 17 6 4.2856 -8.2844 -2.9064 18 1 4.8265 -8.9682 -2.2690 19 6 3.5855 -8.7654 -4.0043 20 7 3.1615 -7.9324 -4.9309 21 14 3.2450 -10.5949 -4.1665 22 1 1.9512 -10.9176 -3.5130 23 1 3.1781 -10.9604 -5.6043 24 1 4.3353 -11.3613 -3.5112 25 6 5.4958 -6.2919 -2.1007 26 6 5.1262 -5.5407 -0.8177 27 1 4.8228 -6.2548 -0.0520 28 8 6.2571 -4.7988 -0.3567 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 2.8703 -1.7285 4.4798 37 1 3.8418 -4.2129 0.9789 38 1 2.4666 -6.0939 -0.7984 39 1 1.9174 -4.6961 -1.7549 40 1 3.2837 -5.4103 -3.6602 41 1 2.2579 -6.7728 -3.1420 42 1 2.6720 -8.2685 -5.6980 43 1 5.8853 -5.5884 -2.8366 44 1 6.2523 -7.0444 -1.8784 45 1 7.0291 -5.3444 -0.1532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090718849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -54.179943 kcal Electronic energy + Delta-G solvation = -27841.319998 eV Core-core repulsion = 23984.813665 eV Total energy + Delta-G solvation = -3856.506333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77352 -40.33252 -39.09269 -36.98914 -36.83245 -35.68160 -33.82980 -31.89164 -30.82564 -30.18363 -28.10737 -27.49881 -26.32712 -24.39304 -23.84321 -22.98914 -22.42444 -21.42263 -20.64678 -19.04763 -18.87373 -18.08671 -17.82843 -17.13717 -16.84754 -16.46748 -16.44913 -15.76400 -15.64228 -15.28395 -15.18459 -14.95320 -14.85675 -14.66965 -14.47579 -14.00914 -13.91007 -13.64492 -13.30169 -13.13328 -13.08831 -12.96421 -12.74358 -12.49142 -12.44243 -12.25657 -12.23768 -12.13141 -12.07203 -11.93595 -11.36074 -11.10693 -10.81092 -10.66204 -10.59698 -10.40245 -10.20723 -9.84275 -8.67268 -7.92664 -5.50500 -0.47221 0.27401 0.65338 0.95485 1.47170 1.48265 1.57559 2.14608 2.29243 2.46845 3.06353 3.16129 3.24846 3.59502 3.60947 3.81961 3.85087 4.01328 4.09046 4.15851 4.18197 4.32739 4.35207 4.47974 4.54993 4.64243 4.69734 4.79977 4.84664 4.87392 4.88524 4.95272 4.98744 5.09925 5.14452 5.28104 5.28492 5.30607 5.53575 5.54340 5.63068 6.28393 6.36450 6.61636 6.85087 7.08692 7.13841 7.72923 8.31760 9.13863 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.002736 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.606242 B =10229.831266 C =10788.721994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.186 4.186 5 S 0.281 5.719 6 C -0.008 4.008 7 N -0.466 5.466 8 C -0.031 4.031 9 C 0.585 3.415 10 O -0.565 6.565 11 N -0.689 5.689 12 C 0.170 3.830 13 H 0.060 0.940 14 C -0.128 4.128 15 C 0.188 3.812 16 N -0.601 5.601 17 C -0.275 4.275 18 H 0.071 0.929 19 C -0.041 4.041 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.263 1.263 25 C 0.121 3.879 26 C 0.102 3.898 27 H 0.070 0.930 28 O -0.572 6.572 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.242 0.758 37 H 0.413 0.587 38 H 0.067 0.933 39 H 0.059 0.941 40 H -0.004 1.004 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.012 0.988 44 H 0.075 0.925 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 17.597 20.522 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.311 4.311 5 S 0.538 5.462 6 C -0.307 4.307 7 N -0.180 5.180 8 C -0.165 4.165 9 C 0.371 3.629 10 O -0.446 6.446 11 N -0.338 5.338 12 C 0.066 3.934 13 H 0.078 0.922 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.326 5.326 17 C -0.405 4.405 18 H 0.089 0.911 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.799 3.201 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.188 1.188 25 C -0.006 4.006 26 C 0.041 3.959 27 H 0.088 0.912 28 O -0.379 6.379 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.258 0.742 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.014 0.986 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.094 0.906 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.609 18.695 20.163 27.733 hybrid contribution 0.582 -2.323 -1.197 2.677 sum -3.027 16.372 18.966 25.237 Atomic orbital electron populations 1.21834 0.92364 1.01676 1.03514 1.20271 0.97113 0.96671 0.93847 1.21880 1.00858 0.93246 1.03607 1.25949 1.02355 0.98717 1.04038 1.82384 1.49391 1.22210 0.92237 1.29014 1.01680 0.95394 1.04599 1.66919 1.20865 1.32241 0.98008 1.20110 1.07208 0.97046 0.92107 1.17546 0.77089 0.80937 0.87358 1.90659 1.55884 1.69078 1.28929 1.45742 1.59611 1.18279 1.10161 1.20708 0.93684 0.92324 0.86733 0.92205 1.22326 0.96666 0.98360 0.99470 1.20419 0.89816 0.91940 0.91701 1.44127 1.07334 1.05497 1.75628 1.19460 1.31563 0.83336 1.06111 0.91132 1.26115 1.01236 1.01993 0.94413 1.70183 1.41178 1.35702 1.10525 0.85226 0.78476 0.80013 0.76428 1.20978 1.22201 1.18754 1.21670 0.90184 0.95504 0.93252 1.22320 0.85713 0.91629 0.96237 0.91231 1.86465 1.24745 1.38800 1.87880 0.90695 0.90635 0.94040 0.88292 0.90679 0.93350 0.90573 0.74196 0.75039 0.91435 0.92280 0.98554 0.93082 0.93885 0.97018 0.90613 0.75414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.17 71.98 0.66 -1.87 16 2 C -0.06 -1.33 3.11 -11.54 -0.04 -1.37 16 3 C -0.14 -2.36 9.03 71.98 0.65 -1.71 16 4 C -0.19 -4.26 5.04 24.99 0.13 -4.14 16 5 S 0.28 3.62 22.39 -56.49 -1.26 2.36 16 6 C -0.01 -0.12 12.17 130.71 1.59 1.48 16 7 N -0.47 -11.21 10.13 -193.03 -1.96 -13.16 16 8 C -0.03 -0.88 6.70 40.56 0.27 -0.61 16 9 C 0.59 20.79 7.75 86.62 0.67 21.47 16 10 O -0.57 -23.17 13.52 -4.14 -0.06 -23.23 16 11 N -0.69 -23.54 4.91 -445.82 -2.19 -25.73 16 12 C 0.17 6.59 2.12 45.02 0.10 6.68 16 13 H 0.06 2.68 7.58 -2.39 -0.02 2.66 16 14 C -0.13 -5.33 5.65 30.67 0.17 -5.16 16 15 C 0.19 9.50 5.25 86.36 0.45 9.96 16 16 N -0.60 -30.48 2.94 -699.11 -2.06 -32.54 16 17 C -0.27 -14.92 9.50 84.03 0.80 -14.13 16 18 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 19 C -0.04 -2.26 4.93 84.86 0.42 -1.84 16 20 N -0.93 -55.88 11.67 21.65 0.25 -55.63 16 21 Si 0.97 44.32 29.58 68.60 2.03 46.35 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.12 5.05 6.14 86.36 0.53 5.58 16 26 C 0.10 3.58 3.14 30.67 0.10 3.68 16 27 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 28 O -0.57 -17.43 13.16 -148.98 -1.96 -19.39 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 3.08 4.96 -2.38 -0.01 3.07 16 33 H 0.07 0.92 7.80 -2.39 -0.02 0.90 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.24 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.41 12.69 8.13 -92.71 -0.75 11.93 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.05 2.84 6.64 -2.39 -0.02 2.83 16 42 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 43 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.08 2.91 7.94 -2.39 -0.02 2.89 16 45 H 0.40 8.22 9.08 -74.06 -0.67 7.55 16 Total: -1.00 -73.83 377.12 -1.10 -74.93 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.40 Total: 28.00 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.50 Total: 18.03 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.95 Total: -127.06 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -2.02 Total: -42.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.26 Total: 2.36 kcal Total: -73.83 -1.10 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090718849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds