Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.47181 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00069 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47051 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99624 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00031 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99995 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00047 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47376 * 89.99286 * 22 20 18 24 24 H 1.48497 * 109.46835 * 209.99820 * 22 20 18 25 25 H 1.48506 * 109.46819 * 329.99299 * 22 20 18 26 26 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 35 35 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 36 36 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 38 38 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 39 39 H 1.09004 * 109.47681 * 300.00097 * 12 11 10 40 40 H 1.09002 * 109.47015 * 60.00478 * 12 11 10 41 41 H 1.00901 * 110.99645 * 56.04913 * 13 12 11 42 42 H 1.08999 * 109.47198 * 300.00075 * 14 13 12 43 43 H 1.08999 * 109.47217 * 60.00492 * 14 13 12 44 44 H 0.96995 * 119.99952 * 359.97438 * 17 15 14 45 45 H 0.96993 * 120.00346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 7 10.2196 1.4411 4.9330 14 6 10.2040 1.4417 6.4020 15 6 11.6195 1.4411 6.9193 16 8 12.5496 1.4407 6.1409 17 7 11.8517 1.4410 8.2469 18 6 13.1394 1.4410 8.7175 19 1 13.9676 1.4407 8.0244 20 6 13.3788 1.4404 10.0862 21 7 12.3711 1.4403 10.9296 22 14 15.1333 1.4397 10.7274 23 1 15.5987 2.8395 10.8978 24 1 15.1817 0.7391 12.0359 25 1 16.0142 0.7396 9.7582 26 16 4.5134 1.4419 1.4068 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8838 1.4322 -2.0957 35 1 6.3957 1.4406 -1.6686 36 1 6.7884 1.4422 2.9262 37 1 9.4373 0.5505 2.5196 38 1 9.4383 2.3305 2.5188 39 1 8.3274 2.3329 4.7354 40 1 8.3262 0.5529 4.7368 41 1 10.7504 2.2216 4.5764 42 1 9.6873 2.3324 6.7595 43 1 9.6855 0.5524 6.7602 44 1 11.1079 1.4417 8.8694 45 1 12.5382 1.4403 11.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128327427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -56.576641 kcal Electronic energy + Delta-G solvation = -24746.974448 eV Core-core repulsion = 20890.364186 eV Total energy + Delta-G solvation = -3856.610262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99787 -38.47574 -38.27092 -36.32667 -35.35860 -34.40876 -33.75792 -31.26669 -31.01268 -29.51462 -27.37643 -25.90131 -24.34763 -23.77725 -22.30142 -21.99888 -21.60277 -19.65118 -19.24819 -18.31506 -17.90596 -16.72372 -16.29967 -16.08254 -15.85698 -15.50194 -15.31905 -15.20853 -14.57141 -14.37750 -14.24941 -14.01875 -13.87371 -13.65696 -13.44320 -13.24940 -13.02299 -12.83225 -12.41455 -12.30817 -12.00812 -11.92259 -11.74215 -11.53443 -11.49370 -11.44351 -11.42186 -11.17777 -11.03563 -10.39305 -10.34275 -10.22126 -9.51683 -9.40424 -9.04222 -8.99529 -8.51372 -8.14160 -7.97167 -6.42457 -3.83261 0.10049 1.01897 1.44226 2.00010 2.78256 2.94644 3.17952 3.26777 3.33122 3.89310 4.08893 4.11601 4.35381 4.38070 4.47005 4.50210 4.74870 4.85289 4.90904 4.95787 4.96935 5.12370 5.16599 5.19512 5.22976 5.25385 5.36421 5.50394 5.51386 5.62456 5.70341 5.71517 5.73898 5.81478 5.88589 5.93333 5.96100 6.10291 6.24293 7.06394 7.17167 7.54848 7.55675 7.88758 8.05415 8.60232 9.17203 9.53053 10.04438 10.75260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.001452 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.500318 B =19277.852306 C =20239.013320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.053 4.053 4 C -0.189 4.189 5 C -0.153 4.153 6 C -0.050 4.050 7 C -0.268 4.268 8 C 0.590 3.410 9 O -0.526 6.526 10 N -0.725 5.725 11 C 0.121 3.879 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 S 0.199 5.801 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.397 0.603 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.379 0.191 -19.795 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.309 4.309 5 C -0.184 4.184 6 C -0.083 4.083 7 C -0.388 4.388 8 C 0.376 3.624 9 O -0.403 6.403 10 N -0.376 5.376 11 C -0.003 4.003 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 S 0.467 5.533 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.173 0.827 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.253 -0.491 -19.105 32.472 hybrid contribution -0.050 0.914 -0.244 0.947 sum -26.303 0.423 -19.348 32.655 Atomic orbital electron populations 1.21780 0.95175 1.02104 1.02012 1.21571 0.96089 0.95364 1.02879 1.20283 0.86957 0.98246 1.03716 1.24260 1.01188 1.07743 0.97677 1.19973 0.92550 1.06213 0.99659 1.20773 0.96218 0.96119 0.95217 1.24582 0.96762 1.19329 0.98167 1.16905 0.86816 0.76535 0.82141 1.90860 1.41774 1.49739 1.57970 1.45777 1.09676 1.75881 1.06310 1.21338 0.81969 1.03808 0.93140 1.22085 0.91771 1.01114 0.93185 1.59927 1.11339 1.51722 1.06823 1.21673 0.97187 1.01355 0.87812 1.19772 0.89768 0.84640 0.83322 1.90535 1.44798 1.55314 1.55936 1.41848 1.08951 1.64338 1.04818 1.19719 0.84444 1.47596 0.91191 0.87876 1.25259 0.99604 0.97266 0.95757 1.69607 1.30969 1.50602 1.03156 0.85850 0.81932 0.78379 0.78099 1.20419 1.20919 1.19365 1.82966 0.94275 1.68284 1.07792 0.92544 0.92340 0.92526 0.91426 0.91608 0.90482 0.89675 0.83799 0.82882 0.76940 0.89791 0.90976 0.94831 0.90381 0.82747 0.93685 0.89432 0.77457 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.15 0.37 -0.15 16 2 C -0.12 -0.51 5.92 -26.74 -0.16 -0.66 16 3 C -0.05 -0.23 5.64 -27.88 -0.16 -0.39 16 4 C -0.19 -1.20 5.53 -35.86 -0.20 -1.40 16 5 C -0.15 -1.06 10.00 -41.41 -0.41 -1.47 16 6 C -0.05 -0.45 10.01 -40.43 -0.40 -0.85 16 7 C -0.27 -2.62 6.45 -36.79 -0.24 -2.86 16 8 C 0.59 7.24 7.78 -12.90 -0.10 7.14 16 9 O -0.53 -8.43 16.84 5.19 0.09 -8.34 16 10 N -0.72 -7.44 5.55 -61.66 -0.34 -7.79 16 11 C 0.12 1.42 5.93 -4.04 -0.02 1.39 16 12 C 0.05 0.56 5.80 -3.82 -0.02 0.53 16 13 N -0.66 -10.49 6.13 -115.05 -0.70 -11.20 16 14 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 15 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 16 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 17 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 S 0.20 1.36 22.10 -107.50 -2.38 -1.02 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.40 3.07 7.59 -40.82 -0.31 2.76 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.35 5.77 8.43 -39.29 -0.33 5.44 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -33.73 399.10 -10.11 -43.84 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.82 Total: 11.82 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.71 Total: 4.39 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.38 Total: -56.95 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.17 Total: -24.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.38 Total: -1.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.73 -10.11 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128327427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.737 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds