Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.47181 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00069 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47051 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99624 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00031 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99995 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00047 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47376 * 89.99286 * 22 20 18 24 24 H 1.48497 * 109.46835 * 209.99820 * 22 20 18 25 25 H 1.48506 * 109.46819 * 329.99299 * 22 20 18 26 26 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 35 35 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 36 36 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 38 38 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 39 39 H 1.09004 * 109.47681 * 300.00097 * 12 11 10 40 40 H 1.09002 * 109.47015 * 60.00478 * 12 11 10 41 41 H 1.00901 * 110.99645 * 56.04913 * 13 12 11 42 42 H 1.08999 * 109.47198 * 300.00075 * 14 13 12 43 43 H 1.08999 * 109.47217 * 60.00492 * 14 13 12 44 44 H 0.96995 * 119.99952 * 359.97438 * 17 15 14 45 45 H 0.96993 * 120.00346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 7 10.2196 1.4411 4.9330 14 6 10.2040 1.4417 6.4020 15 6 11.6195 1.4411 6.9193 16 8 12.5496 1.4407 6.1409 17 7 11.8517 1.4410 8.2469 18 6 13.1394 1.4410 8.7175 19 1 13.9676 1.4407 8.0244 20 6 13.3788 1.4404 10.0862 21 7 12.3711 1.4403 10.9296 22 14 15.1333 1.4397 10.7274 23 1 15.5987 2.8395 10.8978 24 1 15.1817 0.7391 12.0359 25 1 16.0142 0.7396 9.7582 26 16 4.5134 1.4419 1.4068 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8838 1.4322 -2.0957 35 1 6.3957 1.4406 -1.6686 36 1 6.7884 1.4422 2.9262 37 1 9.4373 0.5505 2.5196 38 1 9.4383 2.3305 2.5188 39 1 8.3274 2.3329 4.7354 40 1 8.3262 0.5529 4.7368 41 1 10.7504 2.2216 4.5764 42 1 9.6873 2.3324 6.7595 43 1 9.6855 0.5524 6.7602 44 1 11.1079 1.4417 8.8694 45 1 12.5382 1.4403 11.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128327427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -81.263348 kcal Electronic energy + Delta-G solvation = -24748.044944 eV Core-core repulsion = 20890.364186 eV Total energy + Delta-G solvation = -3857.680758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91776 -40.15448 -39.01332 -37.49866 -36.01559 -35.77160 -35.29250 -33.27081 -31.69890 -30.49784 -28.27062 -27.24661 -25.62581 -24.65438 -23.27127 -22.46611 -22.33632 -21.10759 -20.35194 -19.90813 -19.02624 -17.82354 -17.41258 -17.24220 -16.88316 -16.61392 -16.32895 -16.12259 -15.84123 -15.67477 -15.39180 -14.98088 -14.91491 -14.62787 -14.49361 -14.13399 -14.03264 -13.56485 -13.52732 -13.33057 -13.32072 -12.94295 -12.73639 -12.62710 -12.46225 -12.41105 -12.36116 -12.12035 -12.06975 -11.93960 -11.51987 -11.50818 -11.32861 -10.37121 -10.35375 -10.01384 -9.66168 -9.54475 -9.39924 -8.46741 -5.95334 -0.55549 0.42642 0.86043 1.34563 1.38300 1.42447 1.54976 1.87771 2.05359 2.10390 2.30498 3.00265 3.20734 3.53462 3.65431 3.72326 3.90557 4.06348 4.07867 4.16520 4.28470 4.31554 4.41010 4.43439 4.50075 4.60547 4.62069 4.72250 4.84357 4.85645 4.88987 4.96732 5.03584 5.14900 5.18966 5.23958 5.29248 5.41095 5.41321 5.46302 5.83037 6.06287 6.30820 6.32087 6.60359 7.00390 7.12921 7.56293 8.12042 8.70534 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.001452 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.500318 B =19277.852306 C =20239.013320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.053 4.053 4 C -0.181 4.181 5 C -0.162 4.162 6 C -0.053 4.053 7 C -0.305 4.305 8 C 0.587 3.413 9 O -0.576 6.576 10 N -0.711 5.711 11 C 0.128 3.872 12 C 0.058 3.942 13 N -0.685 5.685 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.571 5.571 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 S 0.239 5.761 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.347 0.653 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.398 0.602 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.079 0.389 -19.147 35.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.301 4.301 5 C -0.192 4.192 6 C -0.087 4.087 7 C -0.425 4.425 8 C 0.375 3.625 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.004 3.996 12 C -0.071 4.071 13 N -0.318 5.318 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.200 1.200 26 S 0.508 5.492 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.165 0.835 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.232 0.768 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.021 -0.295 -18.413 34.370 hybrid contribution 0.672 0.844 -0.502 1.189 sum -28.349 0.549 -18.914 34.084 Atomic orbital electron populations 1.21770 0.94482 1.02243 1.02468 1.21554 0.96661 0.95073 1.02501 1.20399 0.85246 0.98612 1.04920 1.24650 1.02343 1.05729 0.97365 1.20109 0.91578 1.06537 1.00937 1.20930 0.97231 0.95630 0.94931 1.24450 0.96805 1.22017 0.99215 1.17298 0.87437 0.75530 0.82241 1.90823 1.43571 1.52219 1.59104 1.45601 1.09617 1.75045 1.06077 1.21135 0.82518 1.02390 0.93604 1.22071 0.89738 1.03026 0.92291 1.59889 1.13942 1.51896 1.06075 1.21532 0.92633 1.03679 0.88569 1.20930 0.92180 0.82274 0.82391 1.90504 1.47167 1.56683 1.56842 1.41903 1.08261 1.64975 1.05729 1.19668 0.85198 1.50072 0.91644 0.90458 1.26003 1.03462 0.96199 0.95371 1.69659 1.32480 1.50221 1.03585 0.84947 0.77227 0.78655 0.77628 1.19600 1.19461 1.19951 1.82742 0.92141 1.67298 1.07053 0.91997 0.92412 0.92175 0.91756 0.92114 0.89469 0.88325 0.81832 0.83674 0.75205 0.91844 0.92012 0.92336 0.88730 0.83467 0.90833 0.87225 0.76831 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 71.98 0.71 0.02 16 2 C -0.12 -0.73 5.92 30.59 0.18 -0.55 16 3 C -0.05 -0.31 5.64 29.85 0.17 -0.14 16 4 C -0.18 -1.91 5.53 24.68 0.14 -1.77 16 5 C -0.16 -1.99 10.00 21.08 0.21 -1.78 16 6 C -0.05 -0.94 10.01 21.72 0.22 -0.72 16 7 C -0.30 -5.88 6.45 24.07 0.16 -5.72 16 8 C 0.59 14.70 7.78 86.42 0.67 15.37 16 9 O -0.58 -19.47 16.84 -4.34 -0.07 -19.54 16 10 N -0.71 -14.18 5.55 -467.19 -2.59 -16.77 16 11 C 0.13 2.97 5.93 86.38 0.51 3.48 16 12 C 0.06 1.21 5.80 86.30 0.50 1.71 16 13 N -0.68 -20.89 6.13 -517.92 -3.17 -24.06 16 14 C 0.07 2.21 6.17 85.56 0.53 2.74 16 15 C 0.43 20.54 7.82 87.66 0.69 21.22 16 16 O -0.63 -35.01 15.78 -3.06 -0.05 -35.06 16 17 N -0.57 -29.08 5.29 -306.99 -1.62 -30.70 16 18 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 21 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 22 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 S 0.24 2.81 22.10 -56.49 -1.25 1.56 16 27 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.41 5.62 7.59 -92.70 -0.70 4.91 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.35 11.29 8.43 -89.69 -0.76 10.53 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -74.94 399.10 -1.65 -76.59 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -1.16 Total: 36.39 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 5.96 Total: 15.44 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -7.11 Total: -120.37 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.12 Total: -54.59 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.25 Total: 1.56 kcal Total: -74.94 -1.65 -76.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128327427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.672 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds