Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47405 * 128.79620 * 3 2 1 5 5 C 1.34774 * 120.00490 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99690 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.46895 * 109.47106 * 180.02562 * 7 5 4 9 9 C 1.46900 * 110.99924 * 180.02562 * 8 7 5 10 10 C 1.53786 * 113.61608 * 105.85932 * 9 8 7 11 11 C 1.54049 * 86.98426 * 140.01769 * 10 9 8 12 12 C 1.53002 * 113.62024 * 220.02020 * 11 10 9 13 13 N 1.46500 * 109.47425 * 272.50011 * 12 11 10 14 14 C 1.34772 * 120.00059 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00308 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00066 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47579 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00267 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99724 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99776 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99606 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00256 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47220 * 89.99890 * 22 20 18 24 24 H 1.48499 * 109.47313 * 210.00118 * 22 20 18 25 25 H 1.48501 * 109.46960 * 330.00259 * 22 20 18 26 26 C 1.53781 * 113.61428 * 203.46824 * 9 8 7 27 27 H 4.40651 * 5.51367 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47279 * 8.79835 * 3 2 1 29 29 H 1.09001 * 109.47359 * 248.79579 * 3 2 1 30 30 H 0.97006 * 119.99616 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47122 * 60.00287 * 7 5 4 32 32 H 1.09001 * 109.46900 * 300.00559 * 7 5 4 33 33 H 1.00902 * 110.99778 * 303.95198 * 8 7 5 34 34 H 1.09002 * 112.84869 * 334.66356 * 9 8 7 35 35 H 1.08992 * 113.61675 * 254.61513 * 10 9 8 36 36 H 1.09000 * 113.60973 * 25.51800 * 10 9 8 37 37 H 1.08996 * 113.68970 * 89.12734 * 11 10 9 38 38 H 1.08997 * 109.47064 * 32.50151 * 12 11 10 39 39 H 1.09006 * 109.47182 * 152.49563 * 12 11 10 40 40 H 0.96996 * 119.99355 * 359.97438 * 13 12 11 41 41 H 1.09005 * 109.47018 * 300.00068 * 16 14 13 42 42 H 1.09006 * 109.47329 * 59.99263 * 16 14 13 43 43 H 0.97002 * 119.99752 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.61567 * 334.48132 * 26 9 8 45 45 H 1.08998 * 113.61196 * 105.38486 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8663 -1.0765 5 6 4.4590 1.0216 -1.2681 6 8 5.2474 0.4444 -0.5497 7 6 4.9609 1.9125 -2.3751 8 7 6.4299 1.9131 -2.3752 9 6 6.9559 2.7735 -3.4433 10 6 7.5357 4.1036 -2.9337 11 6 8.6594 3.9175 -3.9709 12 6 10.0427 4.3190 -3.4548 13 7 10.2553 5.7494 -3.6897 14 6 11.4127 6.3291 -3.3145 15 8 12.2780 5.6669 -2.7819 16 6 11.6312 7.8005 -3.5555 17 16 13.2676 8.2756 -2.9452 18 6 13.2567 9.9918 -3.3441 19 1 12.3938 10.4290 -3.8243 20 6 14.3575 10.7815 -3.0420 21 7 14.3495 12.0634 -3.3405 22 14 15.8502 10.0249 -2.2121 23 1 16.7969 9.5359 -3.2464 24 1 16.5211 11.0488 -1.3714 25 1 15.4192 8.8886 -1.3587 26 6 8.3834 2.4072 -3.8826 27 1 -1.0501 0.0000 0.0003 28 1 3.0098 -1.0148 -0.1572 29 1 3.0092 0.3725 0.9581 30 1 2.5034 1.3283 -1.6509 31 1 4.5969 2.9277 -2.2177 32 1 4.5980 1.5409 -3.3334 33 1 6.7914 2.1922 -1.4755 34 1 6.2599 2.8904 -4.2741 35 1 6.8953 4.9632 -3.1310 36 1 7.8831 4.0613 -1.9014 37 1 8.4306 4.3468 -4.9462 38 1 10.1057 4.1130 -2.3863 39 1 10.8069 3.7468 -3.9808 40 1 9.5634 6.2789 -4.1159 41 1 11.5674 8.0071 -4.6240 42 1 10.8672 8.3725 -3.0288 43 1 15.1186 12.6154 -3.1291 44 1 8.9622 1.9022 -3.1092 45 1 8.4269 1.8984 -4.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489375710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = 2.747518 kcal Electronic energy + Delta-G solvation = -24652.851911 eV Core-core repulsion = 20798.814138 eV Total energy + Delta-G solvation = -3854.037773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43067 -39.81522 -38.83084 -36.12493 -35.09790 -33.71620 -33.14179 -32.43232 -30.08767 -28.82478 -27.14792 -26.01754 -25.65867 -25.39525 -21.96182 -21.19743 -20.65147 -19.90759 -19.19960 -17.86594 -17.45355 -16.87141 -16.48166 -16.33425 -16.26026 -15.73836 -15.44781 -15.12714 -14.93354 -14.80888 -14.46736 -14.06329 -13.89915 -13.75127 -13.46131 -13.32573 -12.98345 -12.78637 -12.77637 -12.36431 -12.30624 -11.80739 -11.48206 -11.33718 -11.25092 -11.12673 -11.00004 -10.94202 -10.72046 -10.56578 -10.26725 -9.84417 -9.69165 -9.48109 -9.00532 -8.92574 -8.82474 -8.48729 -6.90708 -6.28417 -3.99935 1.73812 2.07584 2.16360 2.78251 2.83655 3.01108 3.32182 3.35611 3.51885 3.60526 3.64828 3.77283 4.15656 4.19912 4.26913 4.34239 4.43685 4.53478 4.74891 4.77147 4.77746 4.90339 4.91982 4.96932 5.08682 5.10882 5.21029 5.31578 5.40969 5.44055 5.51043 5.64816 5.70714 5.76796 5.78355 5.85435 6.01188 6.03115 6.48730 6.58564 6.80849 6.85166 6.93923 7.64747 7.66330 7.94711 8.41966 8.52814 9.18011 10.80854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.001367 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.334600 B =20481.967150 C =20787.766667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.213 4.213 3 C 0.231 3.769 4 N -0.733 5.733 5 C 0.513 3.487 6 O -0.520 6.520 7 C 0.042 3.958 8 N -0.663 5.663 9 C 0.066 3.934 10 C -0.165 4.165 11 C -0.122 4.122 12 C 0.133 3.867 13 N -0.736 5.736 14 C 0.529 3.471 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.115 4.115 27 H 0.223 0.777 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.404 0.596 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.355 0.645 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.091 0.909 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.554 -22.968 -0.019 37.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.213 4.213 3 C 0.109 3.891 4 N -0.388 5.388 5 C 0.299 3.701 6 O -0.394 6.394 7 C -0.091 4.091 8 N -0.295 5.295 9 C -0.044 4.044 10 C -0.204 4.204 11 C -0.141 4.141 12 C 0.009 3.991 13 N -0.390 5.390 14 C 0.314 3.686 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.154 4.154 27 H 0.239 0.761 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.238 0.762 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.176 0.824 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.352 -24.929 1.061 37.023 hybrid contribution -1.479 2.160 -0.477 2.661 sum -28.830 -22.769 0.584 36.741 Atomic orbital electron populations 1.25090 0.96004 0.99124 0.98341 1.22914 0.94264 1.01856 1.02272 1.18054 0.83110 0.96121 0.91838 1.45988 1.07413 1.50069 1.35311 1.20697 0.81604 0.82292 0.85481 1.90758 1.54922 1.47015 1.46714 1.21827 0.90905 0.98072 0.98277 1.60149 1.04429 1.56005 1.08900 1.23067 0.96151 0.90723 0.94426 1.23874 0.98229 0.98543 0.99743 1.22689 0.94151 0.97764 0.99498 1.21270 0.95524 0.81434 1.00902 1.45962 1.18702 1.10111 1.64237 1.20279 0.81324 0.89369 0.77584 1.90703 1.42700 1.64785 1.41298 1.23280 1.04575 0.94182 1.05435 1.84800 1.15678 1.11292 1.79810 1.22324 1.07036 0.91245 1.46330 0.89420 1.24706 0.98071 0.94160 0.94308 1.69940 1.31096 1.04959 1.45771 0.86736 0.83230 0.80739 0.81172 1.19190 1.19935 1.15906 1.23032 0.95436 0.94642 1.02316 0.76062 0.88917 0.88960 0.76206 0.91944 0.87864 0.82401 0.88286 0.91245 0.89415 0.88450 0.91495 0.91438 0.76792 0.88558 0.88548 0.91952 0.89001 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 19.25 29.55 0.57 -0.07 16 2 C -0.21 -1.07 13.46 -37.13 -0.50 -1.57 16 3 C 0.23 1.21 6.15 -6.83 -0.04 1.17 16 4 N -0.73 -3.47 5.54 -63.16 -0.35 -3.82 16 5 C 0.51 3.64 7.87 -10.99 -0.09 3.55 16 6 O -0.52 -5.93 16.20 5.55 0.09 -5.84 16 7 C 0.04 0.20 6.02 -4.98 -0.03 0.17 16 8 N -0.66 -4.62 6.24 -107.13 -0.67 -5.29 16 9 C 0.07 0.39 4.16 -66.90 -0.28 0.11 16 10 C -0.16 -1.04 7.27 -25.77 -0.19 -1.23 16 11 C -0.12 -0.86 3.76 -89.67 -0.34 -1.20 16 12 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 13 N -0.74 -9.14 5.56 -60.29 -0.33 -9.47 16 14 C 0.53 9.41 7.85 -10.99 -0.09 9.33 16 15 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 16 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 22 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C -0.12 -0.79 7.44 -25.92 -0.19 -0.98 16 27 H 0.22 0.11 7.80 -54.08 -0.42 -0.31 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.40 0.94 8.45 -40.82 -0.34 0.60 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.36 2.80 7.91 -39.29 -0.31 2.49 16 34 H 0.10 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.65 7.59 -51.93 -0.39 0.25 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 41 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -37.44 402.84 -8.65 -46.10 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.86 Total: 1.42 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.76 Total: -3.55 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.58 Total: -44.46 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.18 Total: -17.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.44 -8.65 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489375710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.843 kcal (2) G-P(sol) polarization free energy of solvation -37.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds