Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47405 * 128.79620 * 3 2 1 5 5 C 1.34774 * 120.00490 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99690 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.46895 * 109.47106 * 180.02562 * 7 5 4 9 9 C 1.46900 * 110.99924 * 180.02562 * 8 7 5 10 10 C 1.53786 * 113.61608 * 105.85932 * 9 8 7 11 11 C 1.54049 * 86.98426 * 140.01769 * 10 9 8 12 12 C 1.53002 * 113.62024 * 220.02020 * 11 10 9 13 13 N 1.46500 * 109.47425 * 272.50011 * 12 11 10 14 14 C 1.34772 * 120.00059 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00308 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00066 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47579 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00267 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99724 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99776 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99606 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00256 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47220 * 89.99890 * 22 20 18 24 24 H 1.48499 * 109.47313 * 210.00118 * 22 20 18 25 25 H 1.48501 * 109.46960 * 330.00259 * 22 20 18 26 26 C 1.53781 * 113.61428 * 203.46824 * 9 8 7 27 27 H 4.40651 * 5.51367 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47279 * 8.79835 * 3 2 1 29 29 H 1.09001 * 109.47359 * 248.79579 * 3 2 1 30 30 H 0.97006 * 119.99616 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47122 * 60.00287 * 7 5 4 32 32 H 1.09001 * 109.46900 * 300.00559 * 7 5 4 33 33 H 1.00902 * 110.99778 * 303.95198 * 8 7 5 34 34 H 1.09002 * 112.84869 * 334.66356 * 9 8 7 35 35 H 1.08992 * 113.61675 * 254.61513 * 10 9 8 36 36 H 1.09000 * 113.60973 * 25.51800 * 10 9 8 37 37 H 1.08996 * 113.68970 * 89.12734 * 11 10 9 38 38 H 1.08997 * 109.47064 * 32.50151 * 12 11 10 39 39 H 1.09006 * 109.47182 * 152.49563 * 12 11 10 40 40 H 0.96996 * 119.99355 * 359.97438 * 13 12 11 41 41 H 1.09005 * 109.47018 * 300.00068 * 16 14 13 42 42 H 1.09006 * 109.47329 * 59.99263 * 16 14 13 43 43 H 0.97002 * 119.99752 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.61567 * 334.48132 * 26 9 8 45 45 H 1.08998 * 113.61196 * 105.38486 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8663 -1.0765 5 6 4.4590 1.0216 -1.2681 6 8 5.2474 0.4444 -0.5497 7 6 4.9609 1.9125 -2.3751 8 7 6.4299 1.9131 -2.3752 9 6 6.9559 2.7735 -3.4433 10 6 7.5357 4.1036 -2.9337 11 6 8.6594 3.9175 -3.9709 12 6 10.0427 4.3190 -3.4548 13 7 10.2553 5.7494 -3.6897 14 6 11.4127 6.3291 -3.3145 15 8 12.2780 5.6669 -2.7819 16 6 11.6312 7.8005 -3.5555 17 16 13.2676 8.2756 -2.9452 18 6 13.2567 9.9918 -3.3441 19 1 12.3938 10.4290 -3.8243 20 6 14.3575 10.7815 -3.0420 21 7 14.3495 12.0634 -3.3405 22 14 15.8502 10.0249 -2.2121 23 1 16.7969 9.5359 -3.2464 24 1 16.5211 11.0488 -1.3714 25 1 15.4192 8.8886 -1.3587 26 6 8.3834 2.4072 -3.8826 27 1 -1.0501 0.0000 0.0003 28 1 3.0098 -1.0148 -0.1572 29 1 3.0092 0.3725 0.9581 30 1 2.5034 1.3283 -1.6509 31 1 4.5969 2.9277 -2.2177 32 1 4.5980 1.5409 -3.3334 33 1 6.7914 2.1922 -1.4755 34 1 6.2599 2.8904 -4.2741 35 1 6.8953 4.9632 -3.1310 36 1 7.8831 4.0613 -1.9014 37 1 8.4306 4.3468 -4.9462 38 1 10.1057 4.1130 -2.3863 39 1 10.8069 3.7468 -3.9808 40 1 9.5634 6.2789 -4.1159 41 1 11.5674 8.0071 -4.6240 42 1 10.8672 8.3725 -3.0288 43 1 15.1186 12.6154 -3.1291 44 1 8.9622 1.9022 -3.1092 45 1 8.4269 1.8984 -4.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489375710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -27.027468 kcal Electronic energy + Delta-G solvation = -24654.143051 eV Core-core repulsion = 20798.814138 eV Total energy + Delta-G solvation = -3855.328914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04905 -40.68585 -39.83680 -36.60383 -35.97544 -34.68000 -34.56458 -33.53344 -31.42250 -29.42352 -28.06406 -27.72212 -26.53261 -26.01785 -22.60720 -21.90368 -21.66562 -20.61594 -19.83331 -19.53754 -17.99233 -17.78688 -17.39484 -17.28012 -17.06665 -16.85183 -16.71363 -16.27401 -15.86789 -15.64390 -15.41796 -15.00147 -14.92637 -14.66070 -14.63747 -14.37334 -14.15883 -13.61499 -13.52966 -13.34470 -13.31588 -13.01689 -12.90742 -12.73143 -12.60184 -11.91740 -11.85115 -11.84533 -11.51536 -11.48900 -11.29869 -11.17101 -10.95260 -10.80332 -10.52938 -10.16602 -10.09651 -9.28617 -8.99643 -8.51742 -6.22406 0.99686 1.31304 1.39123 1.47270 1.56527 1.58179 1.59025 1.80888 2.23542 2.28101 2.44522 2.72774 2.86799 3.26484 3.33830 3.61327 3.63961 3.81202 3.93331 3.95198 4.03319 4.23913 4.31985 4.40883 4.44949 4.47428 4.47894 4.52019 4.55035 4.74194 4.87527 4.90825 4.95312 4.98369 5.15487 5.24109 5.28363 5.38630 5.52034 5.70770 6.07913 6.11291 6.31108 6.50523 6.51633 6.55491 6.93863 7.19953 7.22485 8.60667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.001367 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.334600 B =20481.967150 C =20787.766667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.248 4.248 3 C 0.231 3.769 4 N -0.720 5.720 5 C 0.510 3.490 6 O -0.572 6.572 7 C 0.046 3.954 8 N -0.681 5.681 9 C 0.077 3.923 10 C -0.161 4.161 11 C -0.111 4.111 12 C 0.132 3.868 13 N -0.708 5.708 14 C 0.531 3.469 15 O -0.567 6.567 16 C -0.110 4.110 17 S -0.180 6.180 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.048 3.952 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 C -0.119 4.119 27 H 0.252 0.748 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.417 0.583 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.346 0.654 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.417 0.583 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.033 -23.599 -1.080 39.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.109 3.891 4 N -0.374 5.374 5 C 0.298 3.702 6 O -0.450 6.450 7 C -0.086 4.086 8 N -0.313 5.313 9 C -0.032 4.032 10 C -0.200 4.200 11 C -0.130 4.130 12 C 0.008 3.992 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.446 6.446 16 C -0.261 4.261 17 S 0.047 5.953 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 C -0.158 4.158 27 H 0.269 0.731 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.254 0.746 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.928 -25.545 -0.046 39.347 hybrid contribution -0.926 2.282 -0.193 2.471 sum -30.854 -23.262 -0.239 38.641 Atomic orbital electron populations 1.25874 0.96743 0.97383 0.96616 1.23002 0.94507 1.03473 1.03886 1.17935 0.83791 0.95756 0.91653 1.45898 1.07097 1.49384 1.34997 1.21192 0.81753 0.81887 0.85411 1.90737 1.56263 1.49269 1.48748 1.21914 0.89698 0.98761 0.98199 1.60124 1.05850 1.56561 1.08726 1.23053 0.95815 0.89775 0.94590 1.23829 0.97975 0.99552 0.98672 1.22663 0.91802 0.98010 1.00517 1.21401 0.97730 0.79842 1.00210 1.45737 1.17200 1.10983 1.62258 1.20010 0.82299 0.88481 0.77543 1.90693 1.44633 1.65420 1.43841 1.23272 1.00723 0.95705 1.06425 1.84761 1.20993 1.08913 1.80656 1.22465 1.06278 0.93136 1.45765 0.91845 1.25528 1.00743 0.94580 0.94914 1.70013 1.32316 1.06161 1.46991 0.85890 0.80039 0.80141 0.80453 1.18683 1.18278 1.16224 1.23039 0.96285 0.94272 1.02242 0.73138 0.89733 0.89803 0.74606 0.89585 0.85667 0.83398 0.85931 0.89796 0.90898 0.86341 0.92910 0.92534 0.74569 0.86715 0.86789 0.91362 0.90833 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 19.25 74.32 1.43 0.59 16 2 C -0.25 -2.30 13.46 31.12 0.42 -1.88 16 3 C 0.23 2.49 6.15 84.57 0.52 3.01 16 4 N -0.72 -6.25 5.54 -472.13 -2.61 -8.86 16 5 C 0.51 6.93 7.87 87.66 0.69 7.62 16 6 O -0.57 -13.52 16.20 -3.05 -0.05 -13.56 16 7 C 0.05 0.35 6.02 85.56 0.52 0.86 16 8 N -0.68 -8.55 6.24 -492.86 -3.07 -11.62 16 9 C 0.08 0.69 4.16 45.44 0.19 0.88 16 10 C -0.16 -1.63 7.27 31.21 0.23 -1.41 16 11 C -0.11 -1.28 3.76 -10.18 -0.04 -1.32 16 12 C 0.13 2.67 5.51 86.38 0.48 3.14 16 13 N -0.71 -16.07 5.56 -463.06 -2.57 -18.65 16 14 C 0.53 18.27 7.85 87.66 0.69 18.95 16 15 O -0.57 -24.77 15.86 -3.04 -0.05 -24.82 16 16 C -0.11 -4.12 6.16 71.23 0.44 -3.68 16 17 S -0.18 -9.15 18.55 -56.49 -1.05 -10.20 16 18 C -0.53 -30.85 10.04 67.95 0.68 -30.17 16 19 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.81 5.50 84.86 0.47 3.28 16 21 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 22 Si 0.91 45.28 27.74 68.60 1.90 47.19 16 23 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 26 C -0.12 -1.42 7.44 31.12 0.23 -1.19 16 27 H 0.25 -0.52 7.80 -4.41 -0.03 -0.55 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.42 1.24 8.45 -92.70 -0.78 0.45 16 31 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.13 0.41 8.13 -2.39 -0.02 0.39 16 33 H 0.35 5.38 7.91 -89.69 -0.71 4.67 16 34 H 0.12 0.57 7.88 -2.39 -0.02 0.55 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.99 7.59 -2.39 -0.02 0.98 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.25 7.85 -2.39 -0.02 1.23 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.42 6.48 8.47 -92.71 -0.79 5.70 16 41 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -83.41 402.84 -1.56 -84.96 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -1.29 Total: 12.42 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.94 Total: -1.30 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -7.96 Total: -94.69 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.10 Total: -38.38 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.20 kcal Total: -83.41 -1.56 -84.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489375710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.937 kcal (2) G-P(sol) polarization free energy of solvation -83.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds