Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52991 * 109.47369 * 119.99942 * 2 1 3 5 5 H 1.09003 * 109.46931 * 295.31109 * 4 2 1 6 6 C 1.53002 * 109.47370 * 175.30904 * 4 2 1 7 7 N 1.46496 * 109.47263 * 185.00121 * 6 4 2 8 8 C 1.34779 * 120.00270 * 180.02562 * 7 6 4 9 9 O 1.21644 * 119.99379 * 359.97438 * 8 7 6 10 10 C 1.47186 * 120.00399 * 180.02562 * 8 7 6 11 11 C 1.44422 * 123.46113 * 179.73014 * 10 8 7 12 12 C 1.32779 * 113.08080 * 179.80695 * 11 10 8 13 13 S 1.75499 * 110.57342 * 0.43748 * 12 11 10 14 14 C 1.36008 * 123.45915 * 0.02562 * 10 8 7 15 15 N 1.46903 * 109.47080 * 55.30843 * 4 2 1 16 16 C 1.46904 * 110.99874 * 64.90626 * 15 4 2 17 17 C 1.50700 * 109.47024 * 185.47583 * 16 15 4 18 18 O 1.21292 * 119.99903 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99744 * 179.72249 * 17 16 15 20 20 C 1.37098 * 119.99690 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00007 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99587 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00336 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99765 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47284 * 59.99696 * 24 22 20 26 26 H 1.48501 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47194 * 300.00012 * 24 22 20 28 28 H 1.09001 * 109.47206 * 294.50254 * 1 2 3 29 29 H 1.08998 * 109.47125 * 54.50494 * 1 2 3 30 30 H 1.09001 * 109.46959 * 174.50176 * 1 2 3 31 31 H 1.09007 * 109.47084 * 240.00480 * 2 1 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46946 * 299.99944 * 3 2 1 34 34 H 1.09001 * 109.46885 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.47134 * 305.00059 * 6 4 2 36 36 H 1.09003 * 109.47102 * 64.99963 * 6 4 2 37 37 H 0.96999 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.07997 * 123.45843 * 359.97438 * 11 10 8 39 39 H 1.07999 * 124.70902 * 180.18154 * 12 11 10 40 40 H 1.08001 * 124.59291 * 0.02562 * 14 10 8 41 41 H 1.00897 * 111.00270 * 188.85269 * 15 4 2 42 42 H 1.09000 * 109.47351 * 65.46953 * 16 15 4 43 43 H 1.09008 * 109.46665 * 305.47264 * 16 15 4 44 44 H 0.97003 * 119.99951 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7469 -0.1611 2.1372 6 6 3.5655 -0.8242 1.1916 7 7 4.0446 -1.6178 2.3259 8 6 5.3644 -1.8422 2.4819 9 8 6.1576 -1.3861 1.6804 10 6 5.8457 -2.6400 3.6213 11 6 7.2405 -2.9309 3.8570 12 6 7.4427 -3.6634 4.9459 13 16 5.9172 -4.0406 5.7274 14 6 5.0220 -3.1839 4.5570 15 7 1.4601 -2.0696 1.3072 16 6 1.9282 -2.8928 0.1841 17 6 1.2121 -4.2187 0.2003 18 8 0.3927 -4.4548 1.0629 19 7 1.4784 -5.1400 -0.7467 20 6 0.8273 -6.3464 -0.7316 21 1 0.1007 -6.5583 0.0388 22 6 1.1023 -7.2965 -1.7076 23 7 1.9868 -7.0389 -2.6447 24 14 0.2146 -8.9399 -1.6875 25 1 -1.2481 -8.7141 -1.8087 26 1 0.6829 -9.7695 -2.8267 27 1 0.5028 -9.6427 -0.4114 28 1 -0.3634 0.4262 0.9351 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0985 31 1 1.8934 -0.5138 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8622 -1.3060 0.2600 36 1 3.9991 0.1748 1.2381 37 1 3.4120 -1.9812 2.9652 38 1 8.0375 -2.5857 3.2152 39 1 8.4110 -3.9860 5.2990 40 1 3.9464 -3.0868 4.5580 41 1 1.6639 -2.5133 2.1901 42 1 3.0015 -3.0583 0.2775 43 1 1.7201 -2.3789 -0.7545 44 1 2.1308 -4.9495 -1.4388 45 1 2.1784 -7.7019 -3.3262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496524759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -45.025793 kcal Electronic energy + Delta-G solvation = -27285.476146 eV Core-core repulsion = 23429.366766 eV Total energy + Delta-G solvation = -3856.109380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23166 -38.82125 -37.61267 -36.84432 -34.46362 -34.00485 -32.95630 -31.20574 -30.39161 -28.49537 -27.23605 -26.22116 -25.08707 -24.22455 -22.77259 -21.28490 -20.17478 -19.37857 -18.80792 -18.30904 -17.84063 -17.21097 -16.70087 -15.88418 -15.55919 -15.25292 -14.93194 -14.64533 -14.48476 -14.08563 -13.87020 -13.75891 -13.46752 -13.36703 -13.23505 -13.03756 -12.71781 -12.65961 -12.40736 -12.23168 -12.03635 -11.67013 -11.59122 -11.45888 -11.35997 -11.04784 -10.88355 -10.81739 -10.44765 -10.42917 -10.20774 -10.01781 -9.49254 -9.33984 -9.20336 -8.65726 -8.51739 -8.08639 -7.95516 -6.40710 -3.81816 0.53868 1.30021 1.67642 1.81564 2.99176 3.20043 3.25559 3.25967 3.30022 3.91186 4.07315 4.29337 4.48146 4.59543 4.69958 4.85650 4.99257 5.00913 5.14027 5.17991 5.19363 5.25431 5.31312 5.52440 5.56249 5.64660 5.68682 5.76613 5.82790 5.87230 5.90963 5.98137 6.00014 6.03200 6.11720 6.25107 6.28657 6.37621 6.60820 7.10753 7.30311 7.51354 7.55314 8.06304 8.08143 8.61786 9.18346 9.55105 10.06389 10.76871 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.003685 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.856650 B = 7595.679870 C =10356.173934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.082 3.918 5 H 0.089 0.911 6 C 0.080 3.920 7 N -0.723 5.723 8 C 0.579 3.421 9 O -0.536 6.536 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.239 4.239 13 S 0.191 5.809 14 C -0.209 4.209 15 N -0.651 5.651 16 C 0.044 3.956 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.396 0.604 38 H 0.154 0.846 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.342 0.658 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 12.987 12.778 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.030 4.030 5 H 0.107 0.893 6 C -0.045 4.045 7 N -0.376 5.376 8 C 0.365 3.635 9 O -0.414 6.414 10 C -0.174 4.174 11 C -0.114 4.114 12 C -0.374 4.374 13 S 0.456 5.544 14 C -0.347 4.347 15 N -0.282 5.282 16 C -0.089 4.089 17 C 0.227 3.773 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.232 0.768 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.188 0.812 41 H 0.162 0.838 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.027 12.381 13.587 19.679 hybrid contribution 0.995 -0.338 -1.311 1.680 sum 8.022 12.043 12.276 18.976 Atomic orbital electron populations 1.21660 0.93747 1.03121 1.00662 1.21088 0.97303 0.95199 0.96910 1.21916 1.00946 0.95973 1.01941 1.21996 0.89264 0.91701 0.99993 0.89310 1.22281 0.96639 0.96174 0.89409 1.45814 1.07225 1.55159 1.29388 1.17574 0.82073 0.79526 0.84331 1.90793 1.54869 1.51272 1.44461 1.20303 0.93674 1.05213 0.98190 1.21132 0.95106 0.98051 0.97070 1.25535 1.02352 1.07729 1.01746 1.83107 0.95977 1.49415 1.25874 1.25725 1.04883 1.03636 1.00505 1.60205 1.61058 1.01389 1.05532 1.21779 0.97162 0.94189 0.95761 1.19783 0.86917 0.85656 0.84958 1.90514 1.37244 1.79914 1.39104 1.41861 1.38170 1.14114 1.25813 1.19635 1.20495 0.90695 1.12164 0.88014 1.25256 0.97070 0.99983 0.95544 1.69604 1.33151 1.36371 1.15076 0.85933 0.79531 0.81129 0.77708 1.19886 1.20973 1.19944 0.93073 0.93593 0.90881 0.90871 0.92614 0.92406 0.92641 0.90719 0.90750 0.76815 0.82873 0.81279 0.81208 0.83843 0.93577 0.89293 0.77524 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.89 37.16 0.33 -1.26 16 2 C -0.09 -0.93 2.13 -90.62 -0.19 -1.13 16 3 C -0.15 -1.34 8.94 37.16 0.33 -1.01 16 4 C 0.08 0.90 2.29 -67.71 -0.16 0.75 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 6 C 0.08 0.94 4.11 -4.04 -0.02 0.92 16 7 N -0.72 -8.49 5.30 -61.46 -0.33 -8.81 16 8 C 0.58 8.10 7.79 -12.63 -0.10 8.01 16 9 O -0.54 -9.26 16.80 5.24 0.09 -9.17 16 10 C -0.16 -1.88 5.98 -104.63 -0.63 -2.50 16 11 C -0.08 -0.93 10.10 -39.02 -0.39 -1.33 16 12 C -0.24 -2.10 11.12 28.86 0.32 -1.78 16 13 S 0.19 1.59 23.02 -107.50 -2.47 -0.89 16 14 C -0.21 -2.07 10.38 29.93 0.31 -1.76 16 15 N -0.65 -9.35 5.01 -107.99 -0.54 -9.89 16 16 C 0.04 0.74 5.27 -4.97 -0.03 0.72 16 17 C 0.44 10.21 7.83 -10.98 -0.09 10.13 16 18 O -0.58 -15.37 15.90 5.55 0.09 -15.28 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 23 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 31 H 0.07 0.87 6.64 -51.92 -0.34 0.52 16 32 H 0.05 0.49 6.67 -51.93 -0.35 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 1.01 6.76 -51.93 -0.35 0.66 16 36 H 0.07 0.84 6.81 -51.93 -0.35 0.49 16 37 H 0.40 3.95 5.72 -40.82 -0.23 3.72 16 38 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.17 1.36 7.01 -52.49 -0.37 0.99 16 41 H 0.34 4.86 7.34 -39.29 -0.29 4.58 16 42 H 0.05 0.77 6.64 -51.93 -0.34 0.43 16 43 H 0.09 1.44 6.29 -51.92 -0.33 1.11 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.12 383.00 -8.44 -41.56 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -6.15 Total: 17.15 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.54 Total: 1.78 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.20 Total: -57.01 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.18 Total: -24.45 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -8.44 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496524759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.465 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds