Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52991 * 109.47369 * 119.99942 * 2 1 3 5 5 H 1.09003 * 109.46931 * 295.31109 * 4 2 1 6 6 C 1.53002 * 109.47370 * 175.30904 * 4 2 1 7 7 N 1.46496 * 109.47263 * 185.00121 * 6 4 2 8 8 C 1.34779 * 120.00270 * 180.02562 * 7 6 4 9 9 O 1.21644 * 119.99379 * 359.97438 * 8 7 6 10 10 C 1.47186 * 120.00399 * 180.02562 * 8 7 6 11 11 C 1.44422 * 123.46113 * 179.73014 * 10 8 7 12 12 C 1.32779 * 113.08080 * 179.80695 * 11 10 8 13 13 S 1.75499 * 110.57342 * 0.43748 * 12 11 10 14 14 C 1.36008 * 123.45915 * 0.02562 * 10 8 7 15 15 N 1.46903 * 109.47080 * 55.30843 * 4 2 1 16 16 C 1.46904 * 110.99874 * 64.90626 * 15 4 2 17 17 C 1.50700 * 109.47024 * 185.47583 * 16 15 4 18 18 O 1.21292 * 119.99903 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99744 * 179.72249 * 17 16 15 20 20 C 1.37098 * 119.99690 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00007 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99587 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00336 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99765 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47284 * 59.99696 * 24 22 20 26 26 H 1.48501 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47194 * 300.00012 * 24 22 20 28 28 H 1.09001 * 109.47206 * 294.50254 * 1 2 3 29 29 H 1.08998 * 109.47125 * 54.50494 * 1 2 3 30 30 H 1.09001 * 109.46959 * 174.50176 * 1 2 3 31 31 H 1.09007 * 109.47084 * 240.00480 * 2 1 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46946 * 299.99944 * 3 2 1 34 34 H 1.09001 * 109.46885 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.47134 * 305.00059 * 6 4 2 36 36 H 1.09003 * 109.47102 * 64.99963 * 6 4 2 37 37 H 0.96999 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.07997 * 123.45843 * 359.97438 * 11 10 8 39 39 H 1.07999 * 124.70902 * 180.18154 * 12 11 10 40 40 H 1.08001 * 124.59291 * 0.02562 * 14 10 8 41 41 H 1.00897 * 111.00270 * 188.85269 * 15 4 2 42 42 H 1.09000 * 109.47351 * 65.46953 * 16 15 4 43 43 H 1.09008 * 109.46665 * 305.47264 * 16 15 4 44 44 H 0.97003 * 119.99951 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7469 -0.1611 2.1372 6 6 3.5655 -0.8242 1.1916 7 7 4.0446 -1.6178 2.3259 8 6 5.3644 -1.8422 2.4819 9 8 6.1576 -1.3861 1.6804 10 6 5.8457 -2.6400 3.6213 11 6 7.2405 -2.9309 3.8570 12 6 7.4427 -3.6634 4.9459 13 16 5.9172 -4.0406 5.7274 14 6 5.0220 -3.1839 4.5570 15 7 1.4601 -2.0696 1.3072 16 6 1.9282 -2.8928 0.1841 17 6 1.2121 -4.2187 0.2003 18 8 0.3927 -4.4548 1.0629 19 7 1.4784 -5.1400 -0.7467 20 6 0.8273 -6.3464 -0.7316 21 1 0.1007 -6.5583 0.0388 22 6 1.1023 -7.2965 -1.7076 23 7 1.9868 -7.0389 -2.6447 24 14 0.2146 -8.9399 -1.6875 25 1 -1.2481 -8.7141 -1.8087 26 1 0.6829 -9.7695 -2.8267 27 1 0.5028 -9.6427 -0.4114 28 1 -0.3634 0.4262 0.9351 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0985 31 1 1.8934 -0.5138 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8622 -1.3060 0.2600 36 1 3.9991 0.1748 1.2381 37 1 3.4120 -1.9812 2.9652 38 1 8.0375 -2.5857 3.2152 39 1 8.4110 -3.9860 5.2990 40 1 3.9464 -3.0868 4.5580 41 1 1.6639 -2.5133 2.1901 42 1 3.0015 -3.0583 0.2775 43 1 1.7201 -2.3789 -0.7545 44 1 2.1308 -4.9495 -1.4388 45 1 2.1784 -7.7019 -3.3262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496524759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -69.233669 kcal Electronic energy + Delta-G solvation = -27286.525878 eV Core-core repulsion = 23429.366766 eV Total energy + Delta-G solvation = -3857.159112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28479 -40.26293 -39.06142 -37.73874 -35.98066 -35.46330 -34.19250 -33.23591 -31.25133 -29.60198 -28.40838 -27.36345 -26.27314 -25.70196 -23.71646 -22.25409 -21.53752 -20.59181 -20.08294 -19.68813 -19.09125 -18.23246 -18.09369 -17.00698 -16.84673 -16.66832 -16.24580 -15.94888 -15.82202 -15.60089 -15.31845 -14.79406 -14.65269 -14.46871 -14.07557 -13.96306 -13.91192 -13.69298 -13.51944 -13.41642 -13.29641 -13.08114 -12.86485 -12.77932 -12.59027 -12.42842 -12.14636 -12.13137 -11.80876 -11.75335 -11.49365 -11.37177 -11.06536 -10.35981 -10.29194 -10.02502 -10.01544 -9.39305 -9.38598 -8.46185 -5.95355 -0.25959 0.59263 0.92971 0.96032 1.39464 1.41137 1.52279 2.02590 2.05924 2.27397 2.28783 2.89877 3.20720 3.48083 3.62614 3.78056 3.85465 3.99451 4.11811 4.20539 4.27164 4.32167 4.38082 4.41105 4.45741 4.54625 4.63868 4.79026 4.80072 4.88909 4.92341 5.09448 5.10881 5.15388 5.19609 5.25649 5.35872 5.40321 5.50385 5.60307 5.83846 6.05585 6.32649 6.37657 6.59106 7.06815 7.12275 7.55885 8.10425 8.71078 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.003685 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.856650 B = 7595.679870 C =10356.173934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.092 3.908 5 H 0.112 0.888 6 C 0.085 3.915 7 N -0.714 5.714 8 C 0.574 3.426 9 O -0.579 6.579 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.232 4.232 13 S 0.241 5.759 14 C -0.213 4.213 15 N -0.656 5.656 16 C 0.064 3.936 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.406 0.594 38 H 0.145 0.855 39 H 0.196 0.804 40 H 0.186 0.814 41 H 0.344 0.656 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.841 13.214 14.129 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.018 4.018 5 H 0.130 0.870 6 C -0.040 4.040 7 N -0.366 5.366 8 C 0.362 3.638 9 O -0.461 6.461 10 C -0.204 4.204 11 C -0.141 4.141 12 C -0.367 4.367 13 S 0.507 5.493 14 C -0.352 4.352 15 N -0.287 5.287 16 C -0.068 4.068 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.099 0.901 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.243 0.757 38 H 0.163 0.837 39 H 0.213 0.787 40 H 0.203 0.797 41 H 0.163 0.837 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.927 12.626 14.954 20.761 hybrid contribution 1.002 -0.386 -1.630 1.952 sum 7.929 12.240 13.324 19.754 Atomic orbital electron populations 1.21595 0.94255 1.01213 1.01631 1.21095 0.96730 0.96539 0.96142 1.21858 1.00997 0.94371 1.02925 1.22052 0.88590 0.89893 1.01282 0.86968 1.22230 0.96820 0.96358 0.88607 1.45754 1.06873 1.54655 1.29362 1.17957 0.82261 0.79199 0.84430 1.90757 1.55936 1.53252 1.46146 1.20279 0.94586 1.06823 0.98672 1.21185 0.94775 0.99770 0.98338 1.25890 1.04023 1.06114 1.00680 1.82973 0.94745 1.47527 1.24056 1.26022 1.05880 1.02943 1.00327 1.60185 1.61601 1.02307 1.04647 1.21512 0.96428 0.91326 0.97531 1.20775 0.86072 0.86918 0.83389 1.90482 1.38657 1.80955 1.40083 1.41957 1.38476 1.14189 1.26620 1.19641 1.21447 0.92447 1.12689 0.90053 1.26054 0.97518 1.02993 0.94748 1.69679 1.33789 1.37509 1.15371 0.84993 0.78359 0.76955 0.78072 1.19599 1.19683 1.19543 0.92142 0.92585 0.94168 0.92067 0.92456 0.91780 0.91360 0.92646 0.89882 0.75698 0.83685 0.78666 0.79663 0.83654 0.92992 0.88203 0.77381 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.89 71.98 0.64 -2.25 16 2 C -0.09 -1.74 2.13 -10.80 -0.02 -1.76 16 3 C -0.14 -2.24 8.94 71.98 0.64 -1.60 16 4 C 0.09 1.90 2.29 44.91 0.10 2.00 16 5 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 6 C 0.09 1.92 4.11 86.38 0.35 2.28 16 7 N -0.71 -16.37 5.30 -466.59 -2.47 -18.85 16 8 C 0.57 16.27 7.79 86.59 0.67 16.95 16 9 O -0.58 -20.70 16.80 -4.17 -0.07 -20.77 16 10 C -0.19 -4.44 5.98 -19.87 -0.12 -4.56 16 11 C -0.11 -2.47 10.10 22.67 0.23 -2.24 16 12 C -0.23 -3.70 11.12 66.64 0.74 -2.96 16 13 S 0.24 3.47 23.02 -56.49 -1.30 2.17 16 14 C -0.21 -3.93 10.38 67.30 0.70 -3.23 16 15 N -0.66 -18.35 5.01 -495.56 -2.48 -20.83 16 16 C 0.06 2.20 5.27 85.56 0.45 2.65 16 17 C 0.44 20.76 7.83 87.66 0.69 21.45 16 18 O -0.62 -32.98 15.90 -3.07 -0.05 -33.03 16 19 N -0.58 -29.86 5.29 -306.98 -1.62 -31.48 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.16 7.68 -2.39 -0.02 1.14 16 31 H 0.06 1.40 6.64 -2.38 -0.02 1.38 16 32 H 0.06 0.89 6.67 -2.39 -0.02 0.88 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.49 6.76 -2.39 -0.02 1.48 16 36 H 0.08 1.78 6.81 -2.39 -0.02 1.76 16 37 H 0.41 7.64 5.72 -92.71 -0.53 7.11 16 38 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.19 2.64 7.01 -2.91 -0.02 2.62 16 41 H 0.34 9.44 7.34 -89.70 -0.66 8.78 16 42 H 0.05 1.74 6.64 -2.39 -0.02 1.73 16 43 H 0.10 3.23 6.29 -2.38 -0.01 3.22 16 44 H 0.39 19.84 7.90 -92.71 -0.73 19.11 16 45 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.96 383.00 -0.20 -73.16 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.87 Total: 46.58 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.36 Total: 8.33 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.30 Total: -121.58 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.12 Total: -53.80 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.30 Total: 2.17 kcal Total: -72.96 -0.20 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496524759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.925 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds