Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47516 * 2 1 4 4 H 1.09000 * 109.47355 * 305.00103 * 3 2 1 5 5 C 1.53001 * 109.47372 * 184.99508 * 3 2 1 6 6 N 1.46493 * 109.47084 * 184.99895 * 5 3 2 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 S 1.81005 * 109.47244 * 179.97438 * 9 7 6 11 11 C 1.76192 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99747 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00171 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47031 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47042 * 119.99895 * 15 13 11 18 18 H 1.48504 * 109.46790 * 239.99932 * 15 13 11 19 19 N 1.46505 * 109.47008 * 64.99634 * 3 2 1 20 20 C 1.34773 * 120.00181 * 275.00503 * 19 3 2 21 21 O 1.21621 * 120.00155 * 359.97438 * 20 19 3 22 22 C 1.47266 * 119.99873 * 180.02562 * 20 19 3 23 23 C 1.46690 * 126.94313 * 0.02562 * 22 20 19 24 24 C 1.34490 * 106.32920 * 180.02562 * 23 22 20 25 25 N 1.36444 * 108.85952 * 0.02562 * 24 23 22 26 26 H 0.96994 * 124.85031 * 180.02562 * 25 24 23 27 27 C 1.34665 * 110.29541 * 359.72666 * 25 24 23 28 28 C 1.50700 * 125.79890 * 180.30262 * 27 25 24 29 29 H 1.08996 * 109.47412 * 300.00329 * 1 2 3 30 30 H 1.09007 * 109.46729 * 59.99997 * 1 2 3 31 31 H 1.09003 * 109.47576 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47412 * 239.99671 * 2 1 3 33 33 H 1.09007 * 109.46729 * 120.00003 * 2 1 3 34 34 H 1.09007 * 109.46593 * 65.00152 * 5 3 2 35 35 H 1.09006 * 109.47216 * 305.00611 * 5 3 2 36 36 H 0.97000 * 120.00740 * 359.72857 * 6 5 3 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 39 39 H 0.97000 * 119.99868 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99576 * 94.99758 * 19 3 2 41 41 H 1.07997 * 126.83156 * 0.03745 * 23 22 20 42 42 H 1.08002 * 125.56679 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47324 * 270.16662 * 28 27 25 44 44 H 1.09004 * 109.47083 * 30.17125 * 28 27 25 45 45 H 1.09006 * 109.47056 * 150.16464 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0631 2.8166 -0.0059 7 6 5.3858 3.0628 -0.0866 8 8 6.1639 2.1476 -0.2536 9 6 5.8978 4.4753 0.0304 10 16 7.7019 4.4772 -0.1166 11 6 8.0206 6.2020 0.0505 12 1 7.2016 6.8910 0.1949 13 6 9.3244 6.6752 -0.0035 14 7 10.3226 5.8354 -0.1790 15 14 9.6624 8.5038 0.1744 16 1 8.3798 9.2284 0.3608 17 1 10.5368 8.7332 1.3526 18 1 10.3394 9.0033 -1.0493 19 7 1.6524 2.0975 1.2518 20 6 0.4352 2.6643 1.3670 21 8 -0.3414 2.6326 0.4315 22 6 0.0458 3.3232 2.6251 23 6 0.8567 3.4516 3.8408 24 6 0.1020 4.1218 4.7296 25 7 -1.1017 4.4119 4.1563 26 1 -1.8226 4.8914 4.5935 27 6 -1.1432 3.9430 2.8946 28 6 -2.3037 4.0761 1.9425 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8309 0.6661 36 1 3.4408 3.5487 0.1273 37 1 5.4676 5.0847 -0.7643 38 1 5.6122 4.8862 0.9987 39 1 11.2337 6.1661 -0.2171 40 1 2.2719 2.1230 1.9978 41 1 1.8600 3.0817 3.9918 42 1 0.3998 4.3863 5.7335 43 1 -2.9687 3.2202 2.0582 44 1 -2.8504 4.9933 2.1620 45 1 -1.9315 4.1113 0.9186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498931450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -43.010109 kcal Electronic energy + Delta-G solvation = -26526.921916 eV Core-core repulsion = 22670.899943 eV Total energy + Delta-G solvation = -3856.021973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55618 -39.90448 -38.89891 -36.46518 -33.73380 -32.80269 -32.41811 -31.83699 -31.03682 -29.97280 -27.85879 -26.60338 -25.47539 -23.59133 -23.03195 -21.25986 -20.67857 -20.22313 -19.76090 -18.02265 -17.84253 -16.67308 -16.42979 -16.19090 -15.66667 -15.44174 -15.03387 -14.83684 -14.79422 -14.29468 -13.91949 -13.83001 -13.56009 -13.38066 -13.28711 -13.19196 -13.03103 -12.87769 -12.77680 -12.59232 -12.26150 -11.87971 -11.71568 -11.65726 -11.26415 -11.06345 -11.00757 -10.97397 -10.74399 -9.92395 -9.79587 -9.41758 -9.23117 -9.07169 -9.06651 -8.88961 -8.48139 -8.21786 -6.48564 -6.20839 -3.90975 1.50082 2.13217 2.73824 3.02771 3.10511 3.22200 3.23398 3.29626 3.34536 3.40570 3.74515 4.21372 4.46212 4.49757 4.66972 4.83811 4.86437 4.92009 4.95864 5.14452 5.17257 5.20383 5.25906 5.31137 5.37866 5.54717 5.56239 5.61907 5.66702 5.70124 5.85126 5.85913 5.89244 5.91686 6.02648 6.16697 6.28894 6.37607 6.45129 6.60640 6.61771 7.08913 7.46089 7.61123 7.71297 8.21879 8.36658 8.62189 9.24774 10.86650 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.002506 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.563517 B =11169.868673 C =12926.397759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.137 3.863 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.738 5.738 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.722 5.722 20 C 0.594 3.406 21 O -0.546 6.546 22 C -0.239 4.239 23 C -0.167 4.167 24 C -0.017 4.017 25 N -0.554 5.554 26 H 0.415 0.585 27 C 0.106 3.894 28 C -0.095 4.095 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.402 0.598 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.130 -6.349 8.550 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.032 3.968 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.393 5.393 7 C 0.318 3.682 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.374 5.374 20 C 0.384 3.616 21 O -0.425 6.425 22 C -0.248 4.248 23 C -0.191 4.191 24 C -0.144 4.144 25 N -0.149 5.149 26 H 0.252 0.748 27 C -0.012 4.012 28 C -0.153 4.153 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.237 0.763 41 H 0.163 0.837 42 H 0.187 0.813 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -26.241 -7.883 7.657 28.449 hybrid contribution -0.822 2.818 1.163 3.158 sum -27.062 -5.064 8.820 28.910 Atomic orbital electron populations 1.21778 0.94595 1.00443 1.03145 1.21882 0.97241 0.95234 1.02675 1.21294 0.93410 0.94266 0.87855 0.88617 1.21594 0.91637 0.84665 1.03265 1.45987 1.07783 1.08887 1.76668 1.20305 0.81391 0.91105 0.75377 1.90706 1.55449 1.46135 1.46870 1.23527 1.06728 0.95230 1.04904 1.85382 0.92058 1.10844 1.95081 1.22909 0.95436 0.92393 1.57499 0.90897 1.24993 0.95087 0.98936 0.94605 1.70028 0.99437 1.34435 1.46413 0.86120 0.78402 0.83052 0.77941 1.19623 1.20583 1.20575 1.45852 1.16812 1.58124 1.16584 1.17261 0.81135 0.76975 0.86224 1.90742 1.51390 1.60095 1.40269 1.20116 0.96298 1.12559 0.95871 1.22077 0.99927 1.04349 0.92707 1.21753 0.86268 1.06253 1.00102 1.41625 1.15381 1.46217 1.11716 0.74814 1.20357 0.97112 0.98045 0.85696 1.20582 0.93785 1.01762 0.99137 0.92338 0.92134 0.93729 0.90764 0.91566 0.90086 0.90993 0.76627 0.89260 0.89251 0.92254 0.76324 0.83663 0.81322 0.90526 0.91925 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.51 37.16 0.32 -1.05 16 2 C -0.13 -1.13 5.61 -26.74 -0.15 -1.28 16 3 C 0.14 1.29 2.41 -67.93 -0.16 1.13 16 4 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 5 C 0.11 1.26 5.23 -4.04 -0.02 1.24 16 6 N -0.74 -9.72 5.39 -60.29 -0.32 -10.05 16 7 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 8 O -0.52 -11.57 15.86 5.56 0.09 -11.49 16 9 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.72 -6.67 4.47 -54.93 -0.25 -6.91 16 20 C 0.59 6.46 6.37 -12.59 -0.08 6.38 16 21 O -0.55 -7.00 11.95 5.26 0.06 -6.94 16 22 C -0.24 -2.37 6.29 -103.35 -0.65 -3.02 16 23 C -0.17 -1.40 10.56 -37.50 -0.40 -1.79 16 24 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 25 N -0.55 -3.39 5.90 -9.11 -0.05 -3.44 16 26 H 0.42 1.23 8.96 -40.82 -0.37 0.86 16 27 C 0.11 0.90 7.17 -81.88 -0.59 0.31 16 28 C -0.10 -0.68 9.88 36.01 0.36 -0.32 16 29 H 0.06 0.64 5.64 -51.93 -0.29 0.35 16 30 H 0.06 0.64 7.84 -51.93 -0.41 0.24 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 4.57 8.14 -40.82 -0.33 4.24 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.40 3.34 7.73 -40.82 -0.32 3.02 16 41 H 0.15 1.03 7.69 -52.49 -0.40 0.63 16 42 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.94 6.47 -51.93 -0.34 0.61 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -36.36 388.68 -8.98 -45.34 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.62 Total: 5.35 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.24 Total: -4.84 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.11 Total: -45.87 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.15 Total: -18.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.36 -8.98 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498931450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.334 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds