Wall clock time and date at job start Sat Apr 11 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47516 * 2 1 4 4 H 1.09000 * 109.47355 * 305.00103 * 3 2 1 5 5 C 1.53001 * 109.47372 * 184.99508 * 3 2 1 6 6 N 1.46493 * 109.47084 * 184.99895 * 5 3 2 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 S 1.81005 * 109.47244 * 179.97438 * 9 7 6 11 11 C 1.76192 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99747 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00171 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47031 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47042 * 119.99895 * 15 13 11 18 18 H 1.48504 * 109.46790 * 239.99932 * 15 13 11 19 19 N 1.46505 * 109.47008 * 64.99634 * 3 2 1 20 20 C 1.34773 * 120.00181 * 275.00503 * 19 3 2 21 21 O 1.21621 * 120.00155 * 359.97438 * 20 19 3 22 22 C 1.47266 * 119.99873 * 180.02562 * 20 19 3 23 23 C 1.46690 * 126.94313 * 0.02562 * 22 20 19 24 24 C 1.34490 * 106.32920 * 180.02562 * 23 22 20 25 25 N 1.36444 * 108.85952 * 0.02562 * 24 23 22 26 26 H 0.96994 * 124.85031 * 180.02562 * 25 24 23 27 27 C 1.34665 * 110.29541 * 359.72666 * 25 24 23 28 28 C 1.50700 * 125.79890 * 180.30262 * 27 25 24 29 29 H 1.08996 * 109.47412 * 300.00329 * 1 2 3 30 30 H 1.09007 * 109.46729 * 59.99997 * 1 2 3 31 31 H 1.09003 * 109.47576 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47412 * 239.99671 * 2 1 3 33 33 H 1.09007 * 109.46729 * 120.00003 * 2 1 3 34 34 H 1.09007 * 109.46593 * 65.00152 * 5 3 2 35 35 H 1.09006 * 109.47216 * 305.00611 * 5 3 2 36 36 H 0.97000 * 120.00740 * 359.72857 * 6 5 3 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 39 39 H 0.97000 * 119.99868 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99576 * 94.99758 * 19 3 2 41 41 H 1.07997 * 126.83156 * 0.03745 * 23 22 20 42 42 H 1.08002 * 125.56679 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47324 * 270.16662 * 28 27 25 44 44 H 1.09004 * 109.47083 * 30.17125 * 28 27 25 45 45 H 1.09006 * 109.47056 * 150.16464 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0631 2.8166 -0.0059 7 6 5.3858 3.0628 -0.0866 8 8 6.1639 2.1476 -0.2536 9 6 5.8978 4.4753 0.0304 10 16 7.7019 4.4772 -0.1166 11 6 8.0206 6.2020 0.0505 12 1 7.2016 6.8910 0.1949 13 6 9.3244 6.6752 -0.0035 14 7 10.3226 5.8354 -0.1790 15 14 9.6624 8.5038 0.1744 16 1 8.3798 9.2284 0.3608 17 1 10.5368 8.7332 1.3526 18 1 10.3394 9.0033 -1.0493 19 7 1.6524 2.0975 1.2518 20 6 0.4352 2.6643 1.3670 21 8 -0.3414 2.6326 0.4315 22 6 0.0458 3.3232 2.6251 23 6 0.8567 3.4516 3.8408 24 6 0.1020 4.1218 4.7296 25 7 -1.1017 4.4119 4.1563 26 1 -1.8226 4.8914 4.5935 27 6 -1.1432 3.9430 2.8946 28 6 -2.3037 4.0761 1.9425 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8309 0.6661 36 1 3.4408 3.5487 0.1273 37 1 5.4676 5.0847 -0.7643 38 1 5.6122 4.8862 0.9987 39 1 11.2337 6.1661 -0.2171 40 1 2.2719 2.1230 1.9978 41 1 1.8600 3.0817 3.9918 42 1 0.3998 4.3863 5.7335 43 1 -2.9687 3.2202 2.0582 44 1 -2.8504 4.9933 2.1620 45 1 -1.9315 4.1113 0.9186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498931450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:03 Heat of formation + Delta-G solvation = -69.311760 kcal Electronic energy + Delta-G solvation = -26528.062442 eV Core-core repulsion = 22670.899943 eV Total energy + Delta-G solvation = -3857.162498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.14459 -40.91609 -40.11720 -37.43819 -34.94249 -34.57323 -33.55485 -32.40791 -31.71332 -31.33237 -28.99080 -27.64661 -27.19560 -24.51336 -23.78485 -22.00121 -21.61556 -21.26843 -20.55414 -19.79679 -18.57194 -17.87439 -17.51376 -17.28288 -16.87461 -16.59766 -16.44896 -16.31889 -15.75128 -15.45474 -15.00623 -14.76792 -14.56070 -14.44369 -14.39343 -14.02198 -13.95977 -13.88198 -13.56974 -13.43239 -13.37224 -13.15016 -12.97227 -12.89124 -12.61925 -12.46198 -12.42910 -12.10992 -11.74576 -11.69594 -11.15104 -10.96617 -10.75531 -10.26441 -10.14253 -10.00817 -9.69941 -9.07213 -8.65097 -8.34080 -6.11528 0.81540 1.27646 1.41801 1.47456 1.57684 1.58862 1.61952 2.12265 2.26537 2.30699 2.59019 2.65288 3.00130 3.32973 3.58609 3.94543 3.95452 4.06652 4.09415 4.17824 4.29922 4.33560 4.36147 4.43360 4.52250 4.58556 4.68677 4.71464 4.75660 4.85231 4.97844 4.99569 5.10198 5.11747 5.20522 5.33615 5.39441 5.43133 5.50499 5.62165 5.84683 6.02455 6.20945 6.45221 6.63705 6.74165 7.07563 7.22145 7.43344 8.75337 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.002506 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.563517 B =11169.868673 C =12926.397759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.086 0.914 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.146 6.146 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.274 1.274 19 N -0.716 5.716 20 C 0.591 3.409 21 O -0.572 6.572 22 C -0.269 4.269 23 C -0.188 4.188 24 C -0.008 4.008 25 N -0.541 5.541 26 H 0.431 0.569 27 C 0.097 3.903 28 C -0.091 4.091 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.408 0.592 41 H 0.152 0.848 42 H 0.200 0.800 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.877 -5.017 9.948 30.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.104 0.896 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.081 5.919 11 C -0.693 4.693 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.367 5.367 20 C 0.382 3.618 21 O -0.453 6.453 22 C -0.279 4.279 23 C -0.212 4.212 24 C -0.136 4.136 25 N -0.138 5.138 26 H 0.271 0.729 27 C -0.022 4.022 28 C -0.148 4.148 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.170 0.830 42 H 0.216 0.784 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.049 -6.541 9.083 30.200 hybrid contribution -0.425 2.344 0.762 2.501 sum -28.474 -4.197 9.845 30.419 Atomic orbital electron populations 1.21684 0.95184 1.00671 1.01728 1.21865 0.96511 0.94583 1.03687 1.21141 0.91896 0.94907 0.87729 0.89620 1.21709 0.92531 0.83096 1.03441 1.45726 1.06034 1.10439 1.74419 1.19979 0.82640 0.89774 0.75356 1.90699 1.56911 1.46924 1.49379 1.23375 1.01138 0.97141 1.06573 1.85529 0.99173 1.11759 1.95472 1.23228 0.96113 0.92505 1.57487 0.90080 1.26113 0.94735 1.04415 0.93872 1.70184 1.00017 1.37030 1.47507 0.84914 0.78726 0.76264 0.78092 1.18141 1.19823 1.19993 1.45782 1.16617 1.57779 1.16564 1.17495 0.81112 0.76784 0.86416 1.90727 1.52130 1.61210 1.41230 1.20256 0.97625 1.13878 0.96121 1.22281 1.00656 1.05595 0.92664 1.22247 0.85794 1.04684 1.00882 1.41641 1.15807 1.45452 1.10902 0.72919 1.20551 0.97064 0.97905 0.86721 1.20527 0.93595 1.03127 0.97597 0.93830 0.93445 0.92615 0.89580 0.90727 0.90148 0.90563 0.75229 0.87693 0.87240 0.91985 0.75654 0.82990 0.78365 0.90160 0.89592 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.51 71.98 0.61 -1.91 16 2 C -0.13 -2.04 5.61 30.59 0.17 -1.87 16 3 C 0.15 2.66 2.41 44.99 0.11 2.77 16 4 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 5 C 0.12 2.44 5.23 86.38 0.45 2.89 16 6 N -0.71 -17.79 5.39 -463.05 -2.49 -20.29 16 7 C 0.54 19.43 7.85 87.65 0.69 20.12 16 8 O -0.56 -25.31 15.86 -3.04 -0.05 -25.35 16 9 C -0.13 -5.19 6.16 71.23 0.44 -4.76 16 10 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 11 C -0.55 -31.17 9.50 67.95 0.65 -30.52 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 15 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 N -0.72 -12.62 4.47 -445.95 -1.99 -14.61 16 20 C 0.59 12.69 6.37 86.62 0.55 13.25 16 21 O -0.57 -14.84 11.95 -4.10 -0.05 -14.89 16 22 C -0.27 -5.14 6.29 -19.04 -0.12 -5.26 16 23 C -0.19 -2.88 10.56 23.62 0.25 -2.63 16 24 C -0.01 -0.09 11.89 83.12 0.99 0.90 16 25 N -0.54 -5.40 5.90 -182.72 -1.08 -6.48 16 26 H 0.43 1.38 8.96 -92.71 -0.83 0.55 16 27 C 0.10 1.54 7.17 41.78 0.30 1.84 16 28 C -0.09 -1.23 9.88 71.24 0.70 -0.52 16 29 H 0.04 0.95 5.64 -2.39 -0.01 0.93 16 30 H 0.05 1.00 7.84 -2.38 -0.02 0.98 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.41 8.66 8.14 -92.71 -0.75 7.90 16 37 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 38 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.41 6.30 7.73 -92.71 -0.72 5.58 16 41 H 0.15 1.95 7.69 -2.91 -0.02 1.93 16 42 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.08 1.49 6.47 -2.38 -0.02 1.47 16 Total: -1.00 -80.74 388.68 0.48 -80.25 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -1.26 Total: 25.08 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 6.26 Total: -4.49 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -5.28 Total: -96.97 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.10 Total: -40.25 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -80.74 0.48 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498931450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.940 kcal (2) G-P(sol) polarization free energy of solvation -80.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds