Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47438 * 120.00159 * 2 1 3 5 5 N 1.29435 * 124.80108 * 300.02438 * 4 2 1 6 6 C 1.30944 * 117.36112 * 180.02562 * 5 4 2 7 7 C 1.35656 * 114.19341 * 359.97438 * 6 5 4 8 8 C 1.46682 * 126.13194 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00197 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99790 * 0.02707 * 8 7 6 11 11 C 1.46507 * 119.99852 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46632 * 180.02562 * 11 10 8 13 13 O 1.42892 * 110.64183 * 66.68900 * 12 11 10 14 14 C 1.55156 * 110.71564 * 190.02172 * 12 11 10 15 15 C 1.54907 * 101.58128 * 153.86295 * 14 12 11 16 16 N 1.47422 * 104.83304 * 322.99076 * 15 14 12 17 17 C 1.36940 * 125.64858 * 204.15705 * 16 15 14 18 18 H 1.08000 * 119.99711 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99716 * 359.96689 * 17 16 15 20 20 N 1.31617 * 120.00525 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99558 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46844 * 119.99925 * 21 19 17 24 24 H 1.48502 * 109.47098 * 239.99777 * 21 19 17 25 25 C 1.47026 * 108.70141 * 24.12862 * 16 15 14 26 26 S 1.70952 * 124.80847 * 120.04652 * 4 2 1 27 27 H 1.08998 * 109.46893 * 299.99958 * 1 2 3 28 28 H 1.08998 * 109.46879 * 59.99949 * 1 2 3 29 29 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46956 * 239.99938 * 2 1 3 31 31 H 1.08998 * 109.47184 * 60.00220 * 3 2 1 32 32 H 1.09000 * 109.47501 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47295 * 299.99871 * 3 2 1 34 34 H 1.07998 * 122.89828 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00391 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46916 * 299.99726 * 11 10 8 37 37 H 1.08997 * 109.46979 * 60.00087 * 11 10 8 38 38 H 0.96704 * 114.00359 * 300.69311 * 13 12 11 39 39 H 1.08999 * 111.00799 * 271.94126 * 14 12 11 40 40 H 1.09009 * 111.00369 * 35.79232 * 14 12 11 41 41 H 1.09000 * 110.36766 * 204.14810 * 15 14 12 42 42 H 1.09004 * 110.36404 * 81.83104 * 15 14 12 43 43 H 0.96997 * 119.99985 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.87813 * 239.52069 * 25 16 15 45 45 H 1.09005 * 109.87894 * 118.35854 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7773 -0.3504 2.4472 6 6 2.2906 -1.0752 3.4094 7 6 3.0337 -2.1252 2.9787 8 6 3.7254 -3.1013 3.8274 9 8 4.3647 -4.0039 3.3200 10 7 3.6530 -2.9984 5.1693 11 6 4.3434 -3.9736 6.0171 12 6 4.1012 -3.6319 7.4886 13 8 2.7251 -3.8137 7.8281 14 6 5.0147 -4.4851 8.4078 15 6 5.1365 -3.5757 9.6559 16 7 5.1930 -2.2038 9.1193 17 6 5.7498 -1.1228 9.7490 18 1 5.7411 -0.1550 9.2697 19 6 6.3251 -1.2708 11.0036 20 7 6.3351 -2.4501 11.5881 21 14 7.0852 0.2037 11.8624 22 1 6.9460 1.4047 11.0002 23 1 6.3897 0.4373 13.1535 24 1 8.5246 -0.0588 12.1159 25 6 4.5532 -2.1887 7.7956 26 16 3.0203 -2.1055 1.2167 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 2.1350 -0.8564 4.4555 35 1 3.1437 -2.2787 5.5738 36 1 3.9599 -4.9723 5.8084 37 1 5.4128 -3.9440 5.8080 38 1 2.1166 -3.2717 7.3075 39 1 4.5394 -5.4330 8.6599 40 1 5.9890 -4.6487 7.9471 41 1 6.0491 -3.8060 10.2055 42 1 4.2647 -3.6958 10.2992 43 1 6.7375 -2.5535 12.4646 44 1 5.2675 -1.8558 7.0425 45 1 3.6891 -1.5244 7.8091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500768874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = -19.420633 kcal Electronic energy + Delta-G solvation = -26883.045365 eV Core-core repulsion = 23028.046309 eV Total energy + Delta-G solvation = -3854.999056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54010 -39.63566 -38.42751 -35.84231 -35.19268 -34.31037 -32.16334 -30.79241 -29.47770 -28.04201 -27.60611 -26.39969 -25.63924 -23.71996 -22.90763 -21.52889 -20.35846 -19.98573 -19.48118 -18.51647 -17.57188 -16.98246 -16.40870 -15.79540 -15.65265 -15.39051 -14.90507 -14.77915 -14.70650 -14.37748 -14.19546 -13.93863 -13.76192 -13.39264 -13.15838 -12.99296 -12.55714 -12.31983 -12.15002 -12.12987 -11.90290 -11.66989 -11.62824 -11.47393 -11.07536 -10.91648 -10.83286 -10.64319 -10.34561 -10.14783 -10.00302 -9.78725 -9.77566 -9.75010 -9.47517 -9.34351 -9.13150 -8.68853 -6.89755 -5.69818 -3.12341 -0.06318 0.82307 1.35171 2.16790 2.98386 3.04020 3.37241 3.42498 3.45176 3.60794 4.31159 4.39374 4.42688 4.46748 4.59487 4.60599 4.78934 4.91263 4.96174 5.12717 5.22159 5.31835 5.33039 5.40139 5.45275 5.47727 5.57939 5.63501 5.78942 5.81138 5.88399 5.91109 6.16692 6.20564 6.35228 6.45403 6.54504 6.57288 7.20662 7.28598 7.52768 7.57538 7.80435 7.88014 7.94809 8.30625 9.16657 9.77013 10.40888 11.34025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002448 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.709179 B =11433.712601 C =12535.051007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.047 3.953 5 N -0.472 5.472 6 C 0.096 3.904 7 C -0.296 4.296 8 C 0.595 3.405 9 O -0.536 6.536 10 N -0.713 5.713 11 C 0.106 3.894 12 C 0.105 3.895 13 O -0.542 6.542 14 C -0.127 4.127 15 C 0.155 3.845 16 N -0.599 5.599 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.920 5.920 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.115 3.885 26 S 0.224 5.776 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.182 0.818 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.364 0.636 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 2.126 -23.752 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.200 4.200 4 C -0.227 4.227 5 N -0.186 5.186 6 C -0.062 4.062 7 C -0.421 4.421 8 C 0.380 3.620 9 O -0.414 6.414 10 N -0.365 5.365 11 C -0.018 4.018 12 C 0.063 3.937 13 O -0.346 6.346 14 C -0.166 4.166 15 C 0.031 3.969 16 N -0.325 5.325 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.746 3.254 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.012 4.012 26 S 0.483 5.517 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.235 0.765 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.210 0.790 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.787 0.915 -24.218 26.137 hybrid contribution -0.280 1.733 1.323 2.198 sum -10.067 2.648 -22.895 25.151 Atomic orbital electron populations 1.21815 0.92505 1.02501 1.03115 1.19909 0.97191 0.96293 0.90693 1.21821 1.01311 0.93747 1.03120 1.27623 0.99717 0.98130 0.97254 1.66036 1.23632 1.30462 0.98454 1.22210 0.93787 0.89946 1.00306 1.25753 1.12422 1.05668 0.98234 1.16671 0.80068 0.83424 0.81863 1.90853 1.42255 1.34391 1.73877 1.45762 1.53486 1.32062 1.05202 1.22193 0.98273 0.92175 0.89174 1.22573 0.82723 0.97480 0.90896 1.86636 1.15547 1.67967 1.64490 1.23060 0.96696 0.98666 0.98221 1.21954 1.02664 0.81461 0.90831 1.44415 1.66717 1.06493 1.14909 1.19097 1.29582 0.87827 0.98842 0.90469 1.24803 1.01291 0.97244 0.97213 1.69797 1.49933 1.20975 1.16104 0.85988 0.78688 0.81347 0.79386 1.20531 1.21680 1.21665 1.21928 0.95862 0.92982 0.90386 1.84077 1.43646 1.23704 1.00242 0.91237 0.91431 0.92439 0.89112 0.91214 0.92386 0.91429 0.80157 0.76503 0.90303 0.89901 0.78951 0.90976 0.90514 0.87368 0.96311 0.93655 0.95124 0.95925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.17 37.16 0.34 -0.45 16 2 C -0.02 -0.12 3.35 -91.77 -0.31 -0.42 16 3 C -0.14 -0.84 9.17 37.16 0.34 -0.50 16 4 C 0.05 0.43 5.90 -13.29 -0.08 0.35 16 5 N -0.47 -4.95 10.49 -11.50 -0.12 -5.07 16 6 C 0.10 0.99 10.93 -18.85 -0.21 0.78 16 7 C -0.30 -3.42 6.48 -37.10 -0.24 -3.66 16 8 C 0.59 8.15 7.79 -12.85 -0.10 8.05 16 9 O -0.54 -9.10 16.97 5.20 0.09 -9.01 16 10 N -0.71 -8.81 5.12 -61.61 -0.32 -9.13 16 11 C 0.11 1.51 4.80 -4.04 -0.02 1.49 16 12 C 0.10 1.75 0.93 -88.79 -0.08 1.66 16 13 O -0.54 -8.75 13.10 -35.23 -0.46 -9.21 16 14 C -0.13 -2.40 6.26 -24.58 -0.15 -2.55 16 15 C 0.16 3.78 5.88 -2.53 -0.01 3.76 16 16 N -0.60 -15.10 3.39 -170.07 -0.58 -15.67 16 17 C -0.23 -6.21 10.27 -15.06 -0.15 -6.37 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 21 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.12 2.26 5.76 -3.07 -0.02 2.24 16 26 S 0.22 2.18 23.00 -107.50 -2.47 -0.29 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.41 8.12 -51.92 -0.42 -0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.18 1.44 7.15 -52.49 -0.38 1.06 16 35 H 0.40 4.08 6.18 -40.82 -0.25 3.83 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 38 H 0.36 4.31 8.44 45.56 0.38 4.69 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.37 7.96 -51.92 -0.41 0.95 16 41 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 45 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -33.87 382.28 -9.33 -43.20 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.98 Total: 4.61 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.79 Total: 4.02 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.45 Total: -55.99 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.37 Total: -18.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.47 Total: -0.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.87 -9.33 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500768874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.782 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds