Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47438 * 120.00159 * 2 1 3 5 5 N 1.29435 * 124.80108 * 300.02438 * 4 2 1 6 6 C 1.30944 * 117.36112 * 180.02562 * 5 4 2 7 7 C 1.35656 * 114.19341 * 359.97438 * 6 5 4 8 8 C 1.46682 * 126.13194 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00197 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99790 * 0.02707 * 8 7 6 11 11 C 1.46507 * 119.99852 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46632 * 180.02562 * 11 10 8 13 13 O 1.42892 * 110.64183 * 66.68900 * 12 11 10 14 14 C 1.55156 * 110.71564 * 190.02172 * 12 11 10 15 15 C 1.54907 * 101.58128 * 153.86295 * 14 12 11 16 16 N 1.47422 * 104.83304 * 322.99076 * 15 14 12 17 17 C 1.36940 * 125.64858 * 204.15705 * 16 15 14 18 18 H 1.08000 * 119.99711 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99716 * 359.96689 * 17 16 15 20 20 N 1.31617 * 120.00525 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99558 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46844 * 119.99925 * 21 19 17 24 24 H 1.48502 * 109.47098 * 239.99777 * 21 19 17 25 25 C 1.47026 * 108.70141 * 24.12862 * 16 15 14 26 26 S 1.70952 * 124.80847 * 120.04652 * 4 2 1 27 27 H 1.08998 * 109.46893 * 299.99958 * 1 2 3 28 28 H 1.08998 * 109.46879 * 59.99949 * 1 2 3 29 29 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46956 * 239.99938 * 2 1 3 31 31 H 1.08998 * 109.47184 * 60.00220 * 3 2 1 32 32 H 1.09000 * 109.47501 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47295 * 299.99871 * 3 2 1 34 34 H 1.07998 * 122.89828 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00391 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46916 * 299.99726 * 11 10 8 37 37 H 1.08997 * 109.46979 * 60.00087 * 11 10 8 38 38 H 0.96704 * 114.00359 * 300.69311 * 13 12 11 39 39 H 1.08999 * 111.00799 * 271.94126 * 14 12 11 40 40 H 1.09009 * 111.00369 * 35.79232 * 14 12 11 41 41 H 1.09000 * 110.36766 * 204.14810 * 15 14 12 42 42 H 1.09004 * 110.36404 * 81.83104 * 15 14 12 43 43 H 0.96997 * 119.99985 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.87813 * 239.52069 * 25 16 15 45 45 H 1.09005 * 109.87894 * 118.35854 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7773 -0.3504 2.4472 6 6 2.2906 -1.0752 3.4094 7 6 3.0337 -2.1252 2.9787 8 6 3.7254 -3.1013 3.8274 9 8 4.3647 -4.0039 3.3200 10 7 3.6530 -2.9984 5.1693 11 6 4.3434 -3.9736 6.0171 12 6 4.1012 -3.6319 7.4886 13 8 2.7251 -3.8137 7.8281 14 6 5.0147 -4.4851 8.4078 15 6 5.1365 -3.5757 9.6559 16 7 5.1930 -2.2038 9.1193 17 6 5.7498 -1.1228 9.7490 18 1 5.7411 -0.1550 9.2697 19 6 6.3251 -1.2708 11.0036 20 7 6.3351 -2.4501 11.5881 21 14 7.0852 0.2037 11.8624 22 1 6.9460 1.4047 11.0002 23 1 6.3897 0.4373 13.1535 24 1 8.5246 -0.0588 12.1159 25 6 4.5532 -2.1887 7.7956 26 16 3.0203 -2.1055 1.2167 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 2.1350 -0.8564 4.4555 35 1 3.1437 -2.2787 5.5738 36 1 3.9599 -4.9723 5.8084 37 1 5.4128 -3.9440 5.8080 38 1 2.1166 -3.2717 7.3075 39 1 4.5394 -5.4330 8.6599 40 1 5.9890 -4.6487 7.9471 41 1 6.0491 -3.8060 10.2055 42 1 4.2647 -3.6958 10.2992 43 1 6.7375 -2.5535 12.4646 44 1 5.2675 -1.8558 7.0425 45 1 3.6891 -1.5244 7.8091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500768874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -44.778661 kcal Electronic energy + Delta-G solvation = -26884.144972 eV Core-core repulsion = 23028.046309 eV Total energy + Delta-G solvation = -3856.098663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48110 -40.67900 -39.76934 -36.83936 -36.40472 -35.46880 -34.00912 -31.89384 -31.08475 -29.45936 -28.04409 -27.56785 -26.96844 -25.29169 -23.72647 -22.59441 -21.93143 -21.38507 -20.50580 -19.25218 -18.92160 -18.52619 -17.61640 -16.89118 -16.77207 -16.69801 -16.16373 -15.87833 -15.67395 -15.46020 -15.36221 -15.17960 -14.83374 -14.67382 -14.48498 -13.92366 -13.86382 -13.63303 -13.31125 -12.98141 -12.93512 -12.80787 -12.68142 -12.65395 -12.39177 -12.13861 -12.08913 -11.99725 -11.97094 -11.86393 -11.68668 -11.41224 -10.95093 -10.76187 -10.62509 -10.61925 -10.32742 -9.97103 -8.91844 -7.79065 -5.23965 -0.85662 0.05957 0.59523 1.32716 1.46518 1.47236 1.57456 1.99832 2.04412 2.47658 2.95756 3.13633 3.30363 3.39042 3.63025 3.69252 3.74263 3.88564 3.92993 4.04617 4.09831 4.12714 4.45182 4.46374 4.59351 4.63615 4.76756 4.81196 4.82775 4.92255 4.95232 4.96727 4.97930 5.04534 5.10163 5.16911 5.34906 5.40426 5.45479 5.60532 5.78718 6.21780 6.28289 6.52639 6.76716 6.93138 7.08306 7.75239 8.38605 9.23187 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002448 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.709179 B =11433.712601 C =12535.051007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.139 4.139 4 C 0.061 3.939 5 N -0.493 5.493 6 C 0.108 3.892 7 C -0.325 4.325 8 C 0.598 3.402 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.120 3.880 12 C 0.126 3.874 13 O -0.553 6.553 14 C -0.120 4.120 15 C 0.159 3.841 16 N -0.622 5.622 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.111 3.889 26 S 0.227 5.773 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.201 0.799 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.385 0.615 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.075 0.925 42 H -0.015 1.015 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 3.336 -26.025 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.198 4.198 4 C -0.213 4.213 5 N -0.207 5.207 6 C -0.051 4.051 7 C -0.450 4.450 8 C 0.385 3.615 9 O -0.455 6.455 10 N -0.356 5.356 11 C -0.004 4.004 12 C 0.084 3.916 13 O -0.360 6.360 14 C -0.159 4.159 15 C 0.034 3.966 16 N -0.349 5.349 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.218 1.218 25 C -0.015 4.015 26 S 0.488 5.512 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.900 2.153 -26.529 28.761 hybrid contribution -0.040 1.421 1.952 2.415 sum -10.939 3.574 -24.577 27.138 Atomic orbital electron populations 1.21805 0.91804 1.02549 1.03474 1.20171 0.97692 0.96460 0.90182 1.21814 1.01051 0.93416 1.03476 1.28212 0.98025 0.97259 0.97810 1.66136 1.24560 1.30989 0.99029 1.22542 0.92349 0.88950 1.01286 1.25564 1.14168 1.06318 0.98923 1.16868 0.79439 0.83156 0.82027 1.90832 1.44083 1.36069 1.74527 1.45587 1.53180 1.31959 1.04847 1.21891 0.98140 0.92886 0.87511 1.22197 0.82786 0.94825 0.91789 1.86603 1.15420 1.68572 1.65432 1.22910 0.98291 0.98423 0.96230 1.21666 0.99479 0.82769 0.92698 1.44698 1.67174 1.06229 1.16751 1.19481 1.29158 0.88836 0.99180 0.89923 1.25654 1.02373 0.99840 0.98203 1.70051 1.50942 1.22798 1.16069 0.84977 0.77337 0.78767 0.78036 1.18981 1.22041 1.21823 1.22143 0.96037 0.95363 0.87911 1.84051 1.43790 1.24068 0.99326 0.92654 0.89312 0.92549 0.86933 0.92688 0.92775 0.89263 0.78277 0.75124 0.89656 0.90591 0.76547 0.89459 0.89422 0.90674 0.99665 0.94293 0.94486 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 71.98 0.66 -0.57 16 2 C -0.02 -0.23 3.35 -11.54 -0.04 -0.27 16 3 C -0.14 -1.33 9.17 71.98 0.66 -0.67 16 4 C 0.06 0.99 5.90 88.46 0.52 1.51 16 5 N -0.49 -9.50 10.49 -190.30 -2.00 -11.50 16 6 C 0.11 2.02 10.93 84.23 0.92 2.94 16 7 C -0.33 -7.06 6.48 23.88 0.15 -6.91 16 8 C 0.60 15.64 7.79 86.45 0.67 16.31 16 9 O -0.57 -19.11 16.97 -4.32 -0.07 -19.18 16 10 N -0.70 -16.02 5.12 -467.06 -2.39 -18.41 16 11 C 0.12 3.20 4.80 86.38 0.41 3.62 16 12 C 0.13 3.99 0.93 -9.61 -0.01 3.98 16 13 O -0.55 -16.71 13.10 -148.98 -1.95 -18.66 16 14 C -0.12 -4.43 6.26 31.98 0.20 -4.23 16 15 C 0.16 7.91 5.88 86.85 0.51 8.42 16 16 N -0.62 -31.52 3.39 -691.99 -2.35 -33.87 16 17 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -56.75 10.09 21.65 0.22 -56.53 16 21 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 C 0.11 4.21 5.76 86.73 0.50 4.71 16 26 S 0.23 4.13 23.00 -56.49 -1.30 2.83 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.68 8.12 -2.38 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.20 2.69 7.15 -2.91 -0.02 2.67 16 35 H 0.41 7.37 6.18 -92.71 -0.57 6.80 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.19 8.03 -2.39 -0.02 2.17 16 38 H 0.39 8.03 8.44 -74.05 -0.62 7.41 16 39 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.09 3.05 7.96 -2.38 -0.02 3.03 16 41 H 0.08 4.25 5.87 -2.39 -0.01 4.23 16 42 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.04 1.38 7.82 -2.39 -0.02 1.36 16 45 H 0.04 1.31 8.07 -2.38 -0.02 1.29 16 Total: -1.00 -74.59 382.28 -1.49 -76.08 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.18 Total: 18.53 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.50 Total: 13.14 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -6.52 Total: -120.30 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.03 Total: -37.84 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.30 Total: 2.83 kcal Total: -74.59 -1.49 -76.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500768874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.304 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds