Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46588 * 2 1 4 4 C 1.50699 * 109.47172 * 119.99990 * 2 1 3 5 5 S 1.70947 * 125.58418 * 306.67874 * 4 2 1 6 6 C 1.70773 * 91.12541 * 180.20008 * 5 4 2 7 7 N 1.28651 * 110.55975 * 359.80495 * 6 5 4 8 8 C 1.33556 * 115.76767 * 0.02562 * 7 6 5 9 9 C 1.47266 * 123.14071 * 180.02562 * 8 7 6 10 10 O 1.21637 * 119.99672 * 186.34741 * 9 8 7 11 11 N 1.34770 * 120.00091 * 6.34148 * 9 8 7 12 12 C 1.46499 * 120.00017 * 183.33769 * 11 9 8 13 13 C 1.52998 * 113.28473 * 306.27955 * 12 11 9 14 14 C 1.53006 * 109.47091 * 292.14032 * 13 12 11 15 15 O 1.42892 * 109.47270 * 184.81209 * 14 13 12 16 16 C 1.53503 * 114.20746 * 173.20670 * 12 11 9 17 17 N 1.47065 * 87.98590 * 220.14999 * 16 12 11 18 18 C 1.36936 * 136.05831 * 207.08250 * 17 16 12 19 19 H 1.08005 * 119.99726 * 354.43669 * 18 17 16 20 20 C 1.38811 * 120.00139 * 174.43683 * 18 17 16 21 21 N 1.31620 * 119.99858 * 182.20539 * 20 18 17 22 22 Si 1.86802 * 119.99842 * 2.47395 * 20 18 17 23 23 H 1.48500 * 109.46644 * 173.50369 * 22 20 18 24 24 H 1.48498 * 109.47301 * 293.50632 * 22 20 18 25 25 H 1.48503 * 109.46817 * 53.51091 * 22 20 18 26 26 C 1.47067 * 87.88572 * 27.34357 * 17 16 12 27 27 H 1.08994 * 109.47293 * 300.00041 * 1 2 3 28 28 H 1.08996 * 109.47164 * 60.00276 * 1 2 3 29 29 H 1.09003 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46855 * 240.00140 * 2 1 3 31 31 H 1.09007 * 109.46853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47556 * 299.99636 * 3 2 1 33 33 H 1.08998 * 109.47408 * 60.00479 * 3 2 1 34 34 H 1.08000 * 124.72061 * 179.83967 * 6 5 4 35 35 H 0.96999 * 120.00268 * 3.34430 * 11 9 8 36 36 H 1.08990 * 109.47371 * 52.14153 * 13 12 11 37 37 H 1.09005 * 109.47070 * 172.14256 * 13 12 11 38 38 H 1.08998 * 109.47200 * 304.81677 * 14 13 12 39 39 H 1.09001 * 109.46688 * 64.81119 * 14 13 12 40 40 H 0.96697 * 114.00433 * 179.97438 * 15 14 13 41 41 H 1.09002 * 113.46487 * 105.36851 * 16 12 11 42 42 H 1.08995 * 113.51729 * 334.94356 * 16 12 11 43 43 H 0.97001 * 119.99899 * 5.29507 * 21 20 18 44 44 H 1.09004 * 113.46615 * 87.43345 * 26 17 16 45 45 H 1.08998 * 113.46821 * 217.87487 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 16 1.5810 -0.3521 2.8399 6 6 2.5991 -1.5869 3.4359 7 7 3.1975 -2.1859 2.4673 8 6 2.9121 -1.7371 1.2422 9 6 3.5037 -2.3044 0.0188 10 8 3.2942 -1.7792 -1.0582 11 7 4.2775 -3.4054 0.0924 12 6 4.9254 -3.9273 -1.1134 13 6 3.9489 -4.1790 -2.2640 14 6 3.0196 -5.3387 -1.8998 15 8 2.1828 -5.6473 -3.0162 16 6 5.9027 -5.0820 -0.8532 17 7 6.7992 -4.4796 -1.8513 18 6 7.7664 -4.9321 -2.7086 19 1 8.0751 -5.9666 -2.6767 20 6 8.3500 -4.0613 -3.6185 21 7 9.2483 -4.5058 -4.4716 22 14 7.8660 -2.2571 -3.6271 23 1 8.7365 -1.5157 -4.5746 24 1 6.4488 -2.1268 -4.0512 25 1 8.0281 -1.6947 -2.2623 26 6 6.2044 -3.1763 -1.5189 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.7228 -1.8314 4.4805 35 1 4.4052 -3.8524 0.9437 36 1 3.3571 -3.2812 -2.4414 37 1 4.5071 -4.4303 -3.1660 38 1 3.6152 -6.2136 -1.6393 39 1 2.4003 -5.0544 -1.0490 40 1 1.5665 -6.3751 -2.8565 41 1 5.5134 -6.0556 -1.1510 42 1 6.3151 -5.0838 0.1557 43 1 9.4466 -5.4543 -4.5169 44 1 6.6960 -2.6748 -0.6852 45 1 6.0722 -2.5262 -2.3837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506124746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -8.460923 kcal Electronic energy + Delta-G solvation = -28388.253665 eV Core-core repulsion = 24533.729857 eV Total energy + Delta-G solvation = -3854.523808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07171 -40.92909 -39.14585 -37.79603 -36.77200 -35.40724 -34.17592 -32.21876 -30.73149 -29.26701 -28.09160 -27.38977 -26.89043 -24.91809 -23.85957 -23.03567 -22.43388 -20.87597 -20.55700 -19.58218 -18.96415 -18.54086 -18.03909 -17.23930 -17.02308 -16.71224 -16.54299 -15.95905 -15.83436 -15.44344 -15.17269 -15.11511 -15.06531 -14.86008 -14.67635 -13.99654 -13.98648 -13.56184 -13.50070 -13.25791 -13.12176 -13.03107 -12.84778 -12.62650 -12.43681 -12.38446 -12.21752 -12.15908 -11.84552 -11.41702 -11.28185 -11.10122 -10.94569 -10.79275 -10.48696 -10.38329 -10.21603 -9.85964 -9.30175 -8.67959 -5.54447 -0.45674 0.28493 0.67236 0.95366 1.32157 1.38304 1.57236 2.01395 2.27663 2.42468 2.86172 2.98261 3.10924 3.20405 3.42567 3.60596 3.85719 3.98928 4.04890 4.14899 4.17367 4.18732 4.29769 4.34737 4.43806 4.46282 4.50153 4.56982 4.70000 4.70966 4.81964 4.88589 4.89404 4.95877 4.96953 5.07583 5.15740 5.17599 5.30032 5.38068 5.57581 5.88698 6.29635 6.61837 6.63440 6.86957 7.14116 7.24253 8.15603 8.86139 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.003668 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.052703 B = 7631.779757 C = 7979.915844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.137 4.137 4 C -0.185 4.185 5 S 0.277 5.723 6 C -0.006 4.006 7 N -0.463 5.463 8 C -0.030 4.030 9 C 0.590 3.410 10 O -0.551 6.551 11 N -0.686 5.686 12 C 0.160 3.840 13 C -0.103 4.103 14 C 0.095 3.905 15 O -0.592 6.592 16 C 0.129 3.871 17 N -0.645 5.645 18 C -0.283 4.283 19 H 0.065 0.935 20 C -0.072 4.072 21 N -0.968 5.968 22 Si 1.102 2.898 23 H -0.298 1.298 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.087 3.913 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.419 0.581 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.397 0.603 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.051 0.949 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.959 8.493 21.501 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.194 4.194 4 C -0.310 4.310 5 S 0.534 5.466 6 C -0.306 4.306 7 N -0.178 5.178 8 C -0.164 4.164 9 C 0.376 3.624 10 O -0.430 6.430 11 N -0.338 5.338 12 C 0.072 3.928 13 C -0.142 4.142 14 C 0.017 3.983 15 O -0.400 6.400 16 C 0.003 3.997 17 N -0.374 5.374 18 C -0.410 4.410 19 H 0.082 0.918 20 C -0.266 4.266 21 N -0.613 5.613 22 Si 0.931 3.069 23 H -0.226 1.226 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.039 4.039 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.257 0.743 35 H 0.258 0.742 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.247 0.753 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.491 10.909 20.277 32.894 hybrid contribution 0.793 -2.956 0.161 3.065 sum -22.698 7.953 20.438 31.562 Atomic orbital electron populations 1.21894 0.92085 1.02212 1.03496 1.20225 0.97165 0.96373 0.93834 1.21828 1.00518 0.93723 1.03379 1.25922 1.01131 1.00038 1.03870 1.82488 1.39731 1.32021 0.92383 1.28993 0.98803 0.98150 1.04615 1.66931 1.24222 1.28707 0.97922 1.20101 1.03879 1.00282 0.92109 1.17508 0.77789 0.79960 0.87122 1.90665 1.61296 1.61394 1.29617 1.45579 1.48637 1.28258 1.11346 1.21846 0.89663 0.95566 0.85694 1.21341 0.96563 0.99978 0.96315 1.21935 0.91830 0.96510 0.87999 1.86457 1.54892 1.58481 1.40178 1.22815 0.87396 0.95804 0.93691 1.45738 1.43944 1.04502 1.43213 1.20021 1.14219 0.96233 1.10555 0.91763 1.26614 0.97104 1.08531 0.94307 1.70994 1.35278 1.15604 1.39463 0.83282 0.74636 0.72759 0.76221 1.22613 1.21247 1.19898 1.23316 0.92049 0.90565 0.97962 0.90815 0.90777 0.92997 0.88204 0.94145 0.90786 0.90802 0.74303 0.74247 0.90022 0.92826 0.92572 0.92674 0.75284 0.91318 0.91100 0.93961 0.93095 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 71.98 0.65 -1.45 16 2 C -0.06 -1.15 3.07 -11.54 -0.04 -1.19 16 3 C -0.14 -2.44 9.17 71.98 0.66 -1.78 16 4 C -0.18 -3.79 5.04 24.99 0.13 -3.67 16 5 S 0.28 3.08 22.40 -56.49 -1.27 1.82 16 6 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 7 N -0.46 -9.69 10.15 -193.03 -1.96 -11.65 16 8 C -0.03 -0.75 6.69 40.56 0.27 -0.48 16 9 C 0.59 18.65 7.58 86.62 0.66 19.31 16 10 O -0.55 -20.54 11.65 -4.15 -0.05 -20.59 16 11 N -0.69 -20.60 5.23 -425.31 -2.23 -22.83 16 12 C 0.16 5.88 0.82 4.17 0.00 5.88 16 13 C -0.10 -3.99 4.91 30.60 0.15 -3.84 16 14 C 0.09 2.84 6.89 71.98 0.50 3.33 16 15 O -0.59 -17.67 13.66 -148.98 -2.03 -19.71 16 16 C 0.13 4.84 7.81 83.18 0.65 5.49 16 17 N -0.65 -32.32 3.46 -737.82 -2.56 -34.88 16 18 C -0.28 -16.85 11.09 84.03 0.93 -15.92 16 19 H 0.06 4.02 8.05 -2.91 -0.02 3.99 16 20 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -64.27 13.70 21.65 0.30 -63.97 16 22 Si 1.10 59.03 25.05 68.60 1.72 60.75 16 23 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 24 H -0.28 -14.93 6.51 99.48 0.65 -14.28 16 25 H -0.27 -13.61 6.53 99.48 0.65 -12.96 16 26 C 0.09 3.97 5.29 83.27 0.44 4.41 16 27 H 0.07 0.79 7.80 -2.39 -0.02 0.77 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 2.86 5.05 -2.39 -0.01 2.84 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.24 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.42 10.51 8.23 -92.71 -0.76 9.75 16 36 H 0.08 3.38 5.78 -2.39 -0.01 3.37 16 37 H 0.05 2.47 7.94 -2.38 -0.02 2.45 16 38 H 0.06 1.56 6.63 -2.39 -0.02 1.54 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.40 7.12 9.12 -74.06 -0.68 6.45 16 41 H 0.07 2.42 6.69 -2.39 -0.02 2.40 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 44 H 0.05 2.27 8.07 -2.38 -0.02 2.26 16 45 H 0.04 1.96 3.99 -2.39 -0.01 1.95 16 Total: -1.00 -81.54 371.64 -1.57 -83.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.55 Total: 20.41 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.06 Total: 7.55 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.44 Total: -133.33 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.08 Total: -40.30 kcal Atomic # 14 Polarization: 59.03 SS G_CDS: 1.72 Total: 60.75 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.27 Total: 1.82 kcal Total: -81.54 -1.57 -83.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506124746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.643 kcal (2) G-P(sol) polarization free energy of solvation -81.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds