Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 N 1.46501 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00068 * 90.00050 * 4 3 2 6 6 C 1.53003 * 109.47048 * 269.99681 * 5 4 3 7 7 N 1.46501 * 109.47048 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99729 * 180.02562 * 7 6 5 9 9 O 1.21695 * 120.00227 * 0.02562 * 8 7 6 10 10 C 1.46673 * 119.99666 * 179.97438 * 8 7 6 11 11 C 1.37877 * 126.23622 * 180.02562 * 10 8 7 12 12 C 1.39828 * 107.08803 * 179.72580 * 11 10 8 13 13 C 1.35452 * 107.86747 * 0.41586 * 12 11 10 14 14 N 1.35535 * 108.86977 * 359.57414 * 13 12 11 15 15 H 0.97001 * 125.67840 * 180.22791 * 14 13 12 16 16 C 1.34781 * 119.99887 * 270.00126 * 4 3 2 17 17 O 1.21282 * 119.99740 * 179.97438 * 16 4 3 18 18 C 1.50695 * 119.99915 * 359.97438 * 16 4 3 19 19 S 1.81007 * 109.46926 * 180.02562 * 18 16 4 20 20 C 1.76206 * 99.99806 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00170 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99831 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00072 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99940 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47534 * 89.99533 * 24 22 20 26 26 H 1.48504 * 109.46951 * 209.99538 * 24 22 20 27 27 H 1.48504 * 109.47051 * 329.99133 * 24 22 20 28 28 H 1.09004 * 109.47048 * 60.00414 * 1 2 3 29 29 H 1.09001 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47407 * 299.99719 * 1 2 3 31 31 H 1.08999 * 109.47407 * 240.00281 * 2 1 3 32 32 H 1.08997 * 109.47557 * 120.00030 * 2 1 3 33 33 H 1.09000 * 109.47057 * 60.00519 * 3 2 1 34 34 H 1.08997 * 109.47279 * 299.99363 * 3 2 1 35 35 H 1.08996 * 109.46888 * 150.00317 * 5 4 3 36 36 H 1.08993 * 109.47548 * 29.99795 * 5 4 3 37 37 H 1.09002 * 109.46814 * 60.00094 * 6 5 4 38 38 H 1.08995 * 109.47541 * 300.00291 * 6 5 4 39 39 H 0.97000 * 120.00269 * 0.02562 * 7 6 5 40 40 H 1.08002 * 126.45184 * 359.97438 * 11 10 8 41 41 H 1.08007 * 126.07013 * 180.25332 * 12 11 10 42 42 H 1.08002 * 125.56918 * 179.84904 * 13 12 11 43 43 H 1.09000 * 109.47547 * 299.99795 * 18 16 4 44 44 H 1.08999 * 109.47501 * 60.00602 * 18 16 4 45 45 H 0.97002 * 119.99959 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2369 1.4428 -1.2697 6 6 4.4918 0.0004 -1.7116 7 7 5.2233 0.0006 -2.9809 8 6 5.5595 -1.1666 -3.5651 9 8 5.2551 -2.2206 -3.0384 10 6 6.2913 -1.1663 -4.8362 11 6 6.6976 -2.2783 -5.5430 12 6 7.3512 -1.8194 -6.6908 13 6 7.3415 -0.4652 -6.6612 14 7 6.6972 -0.0558 -5.5413 15 1 6.5476 0.8662 -5.2797 16 6 4.1793 1.4424 1.1663 17 8 5.3921 1.4420 1.1658 18 6 3.4263 1.4428 2.4717 19 16 4.6031 1.4432 3.8470 20 6 3.4835 1.4443 5.2076 21 1 2.4182 1.4441 5.0304 22 6 3.9708 1.4444 6.5073 23 7 3.1345 1.4457 7.5237 24 14 5.8135 1.4440 6.8139 25 1 6.3022 2.8439 6.8949 26 1 6.1026 0.7441 8.0914 27 1 6.5006 0.7434 5.6992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1893 1.9566 -1.1396 36 1 3.6475 1.9567 -2.0290 37 1 3.5394 -0.5135 -1.8416 38 1 5.0812 -0.5135 -0.9523 39 1 5.4656 0.8407 -3.4010 40 1 6.5372 -3.3094 -5.2647 41 1 7.7888 -2.4354 -7.4625 42 1 7.7726 0.1826 -7.4102 43 1 2.8000 2.3330 2.5297 44 1 2.7994 0.5530 2.5298 45 1 3.4750 1.4461 8.4320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529475086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -31.660013 kcal Electronic energy + Delta-G solvation = -26277.810012 eV Core-core repulsion = 22422.280216 eV Total energy + Delta-G solvation = -3855.529796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61428 -40.01719 -39.18854 -36.51042 -35.25973 -33.04191 -32.45161 -31.54583 -30.80787 -29.65194 -28.09508 -26.20189 -25.62890 -23.84619 -22.58192 -21.77317 -20.91916 -20.46540 -19.74875 -18.98136 -17.77891 -17.04553 -16.47475 -16.13559 -15.83605 -15.66497 -15.19683 -14.96736 -14.73666 -14.52049 -14.26950 -13.97383 -13.86779 -13.74511 -13.54970 -13.29289 -12.96454 -12.81706 -12.68535 -12.65959 -12.27724 -12.15749 -12.01476 -11.53538 -11.40086 -11.25519 -11.02877 -10.80071 -10.62073 -10.44514 -9.87386 -9.58667 -9.45552 -9.39804 -9.01794 -8.82114 -8.61646 -8.51446 -6.94094 -6.30192 -4.02275 1.12259 2.38505 2.41947 2.67836 2.80453 2.89702 3.11718 3.23663 3.31973 3.49780 3.57113 4.31535 4.42990 4.47211 4.61997 4.65929 4.68010 4.80007 4.88456 4.97581 5.07088 5.07587 5.08793 5.09950 5.20342 5.27080 5.45669 5.60283 5.65142 5.67948 5.69925 5.75329 5.81012 5.90886 5.91396 5.97486 6.02072 6.18672 6.30060 6.46318 6.52233 6.91288 7.13884 7.29618 7.86232 7.92772 8.32029 8.40131 9.15973 10.78920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.002299 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.068666 B =12178.403457 C =13298.067160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.109 3.891 4 N -0.616 5.616 5 C 0.109 3.891 6 C 0.102 3.898 7 N -0.729 5.729 8 C 0.588 3.412 9 O -0.523 6.523 10 C -0.056 4.056 11 C -0.105 4.105 12 C -0.212 4.212 13 C 0.022 3.978 14 N -0.541 5.541 15 H 0.415 0.585 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.121 4.121 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.393 0.607 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 0.437 -29.908 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C -0.014 4.014 4 N -0.351 5.351 5 C -0.015 4.015 6 C -0.023 4.023 7 N -0.380 5.380 8 C 0.376 3.624 9 O -0.399 6.399 10 C -0.169 4.169 11 C -0.132 4.132 12 C -0.237 4.237 13 C -0.114 4.114 14 N -0.137 5.137 15 H 0.253 0.747 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.271 4.271 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.226 0.774 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.189 0.811 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.194 -0.179 -29.185 29.268 hybrid contribution -0.751 0.871 0.256 1.178 sum 1.444 0.691 -28.929 28.973 Atomic orbital electron populations 1.21693 0.94917 1.02184 1.01944 1.22083 0.96452 0.97040 1.03189 1.21754 0.78714 0.97324 1.03631 1.47835 1.06766 1.75550 1.04950 1.21452 0.98806 0.95372 0.85884 1.21921 0.97168 0.98310 0.84853 1.45724 1.59489 1.08042 1.24794 1.17049 0.78621 0.83945 0.82816 1.90880 1.54335 1.30900 1.63768 1.20448 1.11700 0.87440 0.97314 1.21378 0.99582 0.97834 0.94413 1.20937 1.08017 0.93810 1.00894 1.22063 1.01581 0.96461 0.91269 1.42034 1.44489 1.08168 1.19049 0.74749 1.20389 0.87906 0.74859 0.84686 1.90705 1.13690 1.47538 1.86782 1.23336 1.03102 1.05745 0.94967 1.84811 1.11920 1.97420 0.97568 1.22289 0.94829 1.58840 0.90830 0.89362 1.24710 0.98522 0.93180 0.94888 1.69936 1.34785 1.48001 0.98872 0.86743 0.85386 0.79897 0.79874 1.19236 1.19920 1.15920 0.92801 0.92346 0.92157 0.91572 0.91018 0.89490 0.90381 0.89212 0.90202 0.90741 0.90369 0.77397 0.83404 0.83820 0.81135 0.88485 0.88308 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.15 -1.46 6.26 -26.73 -0.17 -1.63 16 3 C 0.11 1.04 5.26 -4.04 -0.02 1.02 16 4 N -0.62 -7.57 2.47 -173.69 -0.43 -8.00 16 5 C 0.11 1.06 5.56 -4.04 -0.02 1.04 16 6 C 0.10 1.12 6.00 -4.04 -0.02 1.09 16 7 N -0.73 -6.61 5.55 -61.62 -0.34 -6.95 16 8 C 0.59 6.99 7.79 -12.85 -0.10 6.89 16 9 O -0.52 -8.46 16.88 5.19 0.09 -8.37 16 10 C -0.06 -0.54 7.06 -81.98 -0.58 -1.12 16 11 C -0.11 -1.03 10.65 -39.12 -0.42 -1.45 16 12 C -0.21 -1.55 10.81 -39.98 -0.43 -1.98 16 13 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 14 N -0.54 -3.18 5.99 -9.39 -0.06 -3.24 16 15 H 0.42 1.12 8.19 -40.82 -0.33 0.78 16 16 C 0.53 9.24 7.69 -10.99 -0.08 9.15 16 17 O -0.51 -10.72 15.44 5.56 0.09 -10.63 16 18 C -0.12 -2.31 4.71 36.00 0.17 -2.14 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 24 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.64 6.26 -51.93 -0.33 0.32 16 32 H 0.07 0.85 7.22 -51.93 -0.38 0.48 16 33 H 0.09 0.87 6.44 -51.93 -0.33 0.54 16 34 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 35 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 36 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 37 H 0.07 0.83 6.26 -51.93 -0.33 0.50 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.39 2.15 7.60 -40.82 -0.31 1.84 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.17 0.34 8.06 -52.49 -0.42 -0.09 16 43 H 0.10 1.71 7.40 -51.92 -0.38 1.32 16 44 H 0.10 1.79 7.19 -51.92 -0.37 1.41 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -37.60 389.53 -8.52 -46.12 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.50 Total: 1.34 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.30 Total: -1.95 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.05 Total: -43.84 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.60 -8.52 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529475086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.458 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds