Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47131 * 2 1 4 4 H 1.08997 * 109.46604 * 54.99732 * 3 2 1 5 5 C 1.52999 * 109.46984 * 175.00107 * 3 2 1 6 6 N 1.46506 * 109.46684 * 175.00142 * 5 3 2 7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 3 8 8 O 1.21628 * 119.99665 * 359.97438 * 7 6 5 9 9 C 1.47256 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46684 * 126.94680 * 0.02562 * 9 7 6 11 11 C 1.34484 * 106.33828 * 179.97438 * 10 9 7 12 12 N 1.36446 * 108.85303 * 359.97438 * 11 10 9 13 13 C 1.46507 * 124.84881 * 179.97438 * 12 11 10 14 14 C 1.34658 * 110.30016 * 359.75489 * 12 11 10 15 15 N 1.46497 * 109.46622 * 294.99975 * 3 2 1 16 16 C 1.34779 * 120.00134 * 85.00058 * 15 3 2 17 17 O 1.21278 * 119.99829 * 359.97438 * 16 15 3 18 18 C 1.50700 * 120.00123 * 179.97438 * 16 15 3 19 19 S 1.80995 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00244 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99623 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47241 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47044 * 119.99991 * 24 22 20 27 27 H 1.48499 * 109.47059 * 239.99968 * 24 22 20 28 28 H 1.09001 * 109.46769 * 299.99905 * 1 2 3 29 29 H 1.08997 * 109.47170 * 60.00271 * 1 2 3 30 30 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47463 * 240.00368 * 2 1 3 32 32 H 1.09003 * 109.47582 * 119.99858 * 2 1 3 33 33 H 1.09000 * 109.47486 * 55.00077 * 5 3 2 34 34 H 1.09001 * 109.47362 * 294.99354 * 5 3 2 35 35 H 0.96995 * 120.00050 * 359.72237 * 6 5 3 36 36 H 1.08003 * 126.83240 * 359.95052 * 10 9 7 37 37 H 1.08003 * 125.57312 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.46881 * 90.02493 * 13 12 11 39 39 H 1.09000 * 109.46808 * 210.02651 * 13 12 11 40 40 H 1.08997 * 109.47064 * 330.02849 * 13 12 11 41 41 H 1.07996 * 125.80177 * 180.29867 * 14 12 11 42 42 H 0.97001 * 120.00330 * 264.99061 * 15 3 2 43 43 H 1.08995 * 109.47336 * 300.00119 * 18 16 15 44 44 H 1.09006 * 109.46803 * 60.00223 * 18 16 15 45 45 H 0.96998 * 119.99446 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3857 3.0631 0.0858 8 8 6.1656 2.1458 0.2577 9 6 5.8864 4.4426 -0.0352 10 6 5.0879 5.6554 -0.2428 11 6 5.9594 6.6785 -0.2910 12 7 7.2229 6.1894 -0.1293 13 6 8.4413 7.0030 -0.1248 14 6 7.1896 4.8528 0.0303 15 7 1.6524 2.0974 -1.2518 16 6 0.4351 2.6643 -1.3670 17 8 -0.3396 2.6319 -0.4345 18 6 0.0365 3.3385 -2.6546 19 16 -1.6419 3.9971 -2.4964 20 6 -1.8437 4.7078 -4.0960 21 1 -1.0439 4.6462 -4.8191 22 6 -3.0307 5.3469 -4.4267 23 7 -4.0057 5.4215 -3.5456 24 14 -3.2443 6.1010 -6.1223 25 1 -2.0108 5.8834 -6.9199 26 1 -4.3963 5.4613 -6.8070 27 1 -3.4955 7.5584 -5.9878 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0378 1.0960 35 1 3.4413 3.5479 -0.1352 36 1 4.0138 5.7149 -0.3384 37 1 5.7014 7.7175 -0.4335 38 1 8.6599 7.3242 0.8936 39 1 9.2741 6.4121 -0.5061 40 1 8.2963 7.8779 -0.7585 41 1 8.0464 4.2131 0.1820 42 1 2.2719 2.1232 -1.9978 43 1 0.7279 4.1539 -2.8668 44 1 0.0679 2.6143 -3.4687 45 1 -4.8353 5.8678 -3.7769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531145736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -31.259763 kcal Electronic energy + Delta-G solvation = -26348.641859 eV Core-core repulsion = 22493.129420 eV Total energy + Delta-G solvation = -3855.512440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47230 -39.90061 -38.95801 -36.34839 -33.93448 -33.02751 -32.43986 -32.36754 -29.65213 -29.29525 -28.31063 -26.76506 -25.48584 -23.85298 -22.16337 -21.39560 -20.39941 -20.31988 -19.73424 -18.28521 -17.76503 -16.63503 -16.32005 -16.06830 -15.77943 -15.57890 -15.19553 -14.89909 -14.80893 -14.42868 -14.17006 -13.65255 -13.54405 -13.40695 -13.36872 -13.10754 -12.98961 -12.87779 -12.60603 -12.48080 -12.28633 -12.20327 -11.70736 -11.40758 -11.13706 -11.07813 -11.01506 -10.76711 -10.71843 -10.02001 -9.80487 -9.38511 -9.20731 -9.08261 -8.86910 -8.85012 -8.58539 -8.23658 -6.50192 -6.22701 -3.92707 1.56829 2.18513 2.47476 3.00270 3.07412 3.20797 3.23705 3.28791 3.33828 3.47347 3.72802 4.19759 4.31224 4.50092 4.62901 4.66570 4.68304 4.92654 4.94469 5.02532 5.08617 5.12816 5.16874 5.22705 5.32458 5.50013 5.53042 5.63553 5.65592 5.82566 5.85408 5.88215 5.95772 6.09284 6.14581 6.27172 6.33984 6.48141 6.62302 6.68185 6.73676 6.90887 7.49174 7.59401 7.70251 8.23441 8.34813 8.61533 9.23148 10.84711 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.002786 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.516468 B =10049.016953 C =12646.563856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.095 0.905 5 C 0.115 3.885 6 N -0.725 5.725 7 C 0.593 3.407 8 O -0.558 6.558 9 C -0.237 4.237 10 C -0.166 4.166 11 C -0.017 4.017 12 N -0.448 5.448 13 C 0.069 3.931 14 C 0.074 3.926 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.509 6.509 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.405 0.595 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.174 0.826 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.935 -1.102 7.090 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.009 4.009 6 N -0.376 5.376 7 C 0.383 3.617 8 O -0.438 6.438 9 C -0.247 4.247 10 C -0.190 4.190 11 C -0.143 4.143 12 N -0.124 5.124 13 C -0.073 4.073 14 C -0.062 4.062 15 N -0.390 5.390 16 C 0.319 3.681 17 O -0.383 6.383 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.240 0.760 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.191 0.809 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.276 -1.520 8.821 24.938 hybrid contribution 0.720 0.964 -2.658 2.918 sum 23.996 -0.555 6.163 24.781 Atomic orbital electron populations 1.21804 0.94059 1.00656 1.03843 1.21879 0.97740 0.95032 1.02175 1.21248 0.92490 0.94624 0.88728 0.88656 1.21646 0.92588 0.83640 1.03049 1.45759 1.07524 1.09750 1.74594 1.17361 0.81724 0.87280 0.75366 1.90759 1.56202 1.46017 1.50860 1.20311 0.93505 0.92883 1.18009 1.22125 0.99000 0.90870 1.06964 1.21804 0.82597 0.99712 1.10173 1.43645 1.07218 1.06620 1.54913 1.22130 0.85398 0.96154 1.03624 1.21760 0.98378 0.83415 1.02611 1.46119 1.17379 1.59396 1.16155 1.20245 0.80807 0.77488 0.89558 1.90718 1.50289 1.57222 1.40061 1.23546 1.06985 1.02831 0.97171 1.85373 1.06518 1.70862 1.20435 1.22908 1.03936 1.41903 0.99521 0.90933 1.24987 0.94868 0.95599 0.98145 1.70025 1.05011 1.41083 1.34172 0.86130 0.78288 0.78769 0.82394 1.19622 1.20585 1.20589 0.92020 0.91745 0.93642 0.91722 0.91189 0.90920 0.90118 0.75966 0.83453 0.81444 0.90614 0.89601 0.89475 0.80909 0.76754 0.89316 0.89361 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.51 37.16 0.32 -1.68 16 2 C -0.13 -1.38 5.61 -26.73 -0.15 -1.53 16 3 C 0.13 1.48 2.42 -67.93 -0.16 1.32 16 4 H 0.10 1.21 7.58 -51.93 -0.39 0.81 16 5 C 0.12 1.16 5.23 -4.04 -0.02 1.14 16 6 N -0.72 -7.83 5.39 -61.43 -0.33 -8.16 16 7 C 0.59 7.57 7.81 -12.60 -0.10 7.48 16 8 O -0.56 -8.72 16.91 5.25 0.09 -8.63 16 9 C -0.24 -2.67 6.29 -103.35 -0.65 -3.32 16 10 C -0.17 -1.64 10.56 -37.50 -0.40 -2.04 16 11 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 12 N -0.45 -3.38 3.09 -124.52 -0.38 -3.76 16 13 C 0.07 0.23 11.03 59.85 0.66 0.89 16 14 C 0.07 0.70 11.12 -16.84 -0.19 0.51 16 15 N -0.74 -8.97 4.47 -53.80 -0.24 -9.21 16 16 C 0.53 9.06 6.42 -10.98 -0.07 8.99 16 17 O -0.51 -10.41 13.00 5.56 0.07 -10.33 16 18 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.53 -14.95 9.50 30.94 0.29 -14.66 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.06 0.91 7.85 -51.93 -0.41 0.51 16 29 H 0.06 1.06 5.64 -51.93 -0.29 0.76 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.16 7.26 -40.82 -0.30 3.86 16 36 H 0.15 1.34 7.70 -52.48 -0.40 0.94 16 37 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.19 8.13 -51.93 -0.42 -0.24 16 40 H 0.09 0.18 8.13 -51.93 -0.42 -0.24 16 41 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -36.29 393.26 -8.66 -44.95 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.76 Total: 5.93 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.53 Total: -4.02 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.22 Total: -46.24 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.29 -8.66 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531145736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.689 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds