Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47318 * 34.57559 * 3 2 1 5 5 C 1.37088 * 120.00491 * 264.38933 * 4 3 2 6 6 H 1.08001 * 120.00508 * 196.17628 * 5 4 3 7 7 C 1.38957 * 119.99695 * 16.17847 * 5 4 3 8 8 N 1.31407 * 119.99748 * 20.84922 * 7 5 4 9 9 Si 1.86803 * 119.99732 * 200.84666 * 7 5 4 10 10 H 1.48495 * 109.46847 * 84.94663 * 9 7 5 11 11 H 1.48505 * 109.46627 * 204.94138 * 9 7 5 12 12 H 1.48497 * 109.47512 * 324.94281 * 9 7 5 13 13 C 1.34780 * 119.99435 * 84.38679 * 4 3 2 14 14 O 1.21292 * 119.99621 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00325 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47178 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47345 * 179.97438 * 16 15 13 18 18 C 1.34775 * 120.00458 * 179.97438 * 17 16 15 19 19 O 1.21649 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.47051 * 120.00198 * 180.02562 * 18 17 16 21 21 C 1.35867 * 125.43192 * 180.02562 * 20 18 17 22 22 C 1.41586 * 107.72832 * 179.97438 * 21 20 18 23 23 C 1.40107 * 133.37304 * 179.97438 * 22 21 20 24 24 C 1.36447 * 119.82313 * 180.02562 * 23 22 21 25 25 C 1.38939 * 120.61816 * 0.06717 * 24 23 22 26 26 C 1.37675 * 120.64767 * 359.90344 * 25 24 23 27 27 C 1.39220 * 119.80917 * 0.06161 * 26 25 24 28 28 N 1.37487 * 133.17857 * 179.97438 * 27 26 25 29 29 H 0.96996 * 125.60845 * 0.04755 * 28 27 26 30 30 H 4.40643 * 5.51374 * 180.02562 * 4 1 2 31 31 H 1.08997 * 109.46951 * 274.57605 * 3 2 1 32 32 H 1.08998 * 109.47088 * 154.58007 * 3 2 1 33 33 H 0.97008 * 119.99495 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47302 * 59.99667 * 15 13 4 35 35 H 1.09000 * 109.46655 * 299.99660 * 15 13 4 36 36 H 1.09010 * 109.46905 * 59.99790 * 16 15 13 37 37 H 1.08997 * 109.47057 * 300.00302 * 16 15 13 38 38 H 0.97007 * 119.99601 * 359.97438 * 17 16 15 39 39 H 1.08005 * 126.13465 * 359.96665 * 21 20 18 40 40 H 1.07989 * 120.08807 * 0.02842 * 23 22 21 41 41 H 1.08005 * 119.68761 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.67244 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.09007 * 180.34248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1364 -0.7838 5 6 3.4733 -2.3070 -0.1558 6 1 4.0692 -3.0446 -0.6729 7 6 3.0497 -2.5447 1.1461 8 7 2.0215 -1.8869 1.6328 9 14 3.9419 -3.7992 2.2042 10 1 5.1129 -3.1564 2.8527 11 1 3.0184 -4.3129 3.2475 12 1 4.4034 -4.9256 1.3536 13 6 3.2518 -1.0314 -2.1224 14 8 3.6570 -1.9726 -2.7714 15 6 2.8802 0.2556 -2.8127 16 6 3.1049 0.1097 -4.3191 17 7 2.7431 1.3606 -4.9903 18 6 2.8609 1.4658 -6.3288 19 8 3.2673 0.5218 -6.9796 20 6 2.4983 2.7216 -7.0024 21 6 2.5730 2.9481 -8.3400 22 6 2.1352 4.2733 -8.5780 23 6 1.9975 5.0476 -9.7376 24 6 1.5377 6.3290 -9.6473 25 6 1.2050 6.8762 -8.4143 26 6 1.3310 6.1354 -7.2607 27 6 1.7973 4.8254 -7.3270 28 7 2.0262 3.8590 -6.3762 29 1 1.8806 3.9594 -5.4225 30 1 -1.0499 -0.0001 -0.0003 31 1 3.0093 -0.0812 1.0244 32 1 3.0089 0.9290 -0.4411 33 1 1.7256 -2.0531 2.5415 34 1 3.5009 1.0656 -2.4299 35 1 1.8309 0.4805 -2.6217 36 1 2.4844 -0.7005 -4.7023 37 1 4.1543 -0.1151 -4.5098 38 1 2.4188 2.1132 -4.4713 39 1 2.9065 2.2435 -9.0875 40 1 2.2546 4.6312 -10.7002 41 1 1.4328 6.9240 -10.5425 42 1 0.8429 7.8923 -8.3605 43 1 1.0645 6.5680 -6.3077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538103516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = 56.825741 kcal Electronic energy + Delta-G solvation = -27269.547198 eV Core-core repulsion = 23282.410481 eV Total energy + Delta-G solvation = -3987.136717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83139 -39.54751 -38.72194 -37.03384 -35.58298 -34.91713 -32.47032 -32.28480 -31.34050 -30.88081 -29.61046 -29.12880 -26.60292 -25.48984 -24.21420 -22.65831 -22.41294 -21.38515 -20.39463 -19.24931 -18.45186 -17.95867 -17.36893 -16.77095 -16.53305 -16.08988 -15.79661 -15.45209 -15.01263 -14.83171 -14.45324 -14.33738 -14.26068 -14.13505 -14.01507 -13.52427 -13.44362 -13.13187 -12.62518 -12.33908 -12.30064 -12.03272 -11.90552 -11.68946 -11.47306 -11.23743 -11.17097 -11.03036 -10.55220 -10.38268 -10.27680 -10.18928 -9.47435 -9.38660 -9.16803 -8.98805 -8.55510 -8.54638 -8.07623 -7.97125 -6.41708 -3.93731 0.49999 1.31296 1.88830 2.59684 2.94959 3.10422 3.20378 3.21534 3.25912 3.56494 3.60733 3.79942 3.92911 4.11717 4.36312 4.50531 4.70268 4.80643 4.82019 4.95892 4.99972 5.10077 5.14437 5.23976 5.34522 5.41265 5.43430 5.60000 5.67233 5.73075 5.83054 6.11830 6.13534 6.18123 6.18878 6.24614 6.30593 6.38905 6.42707 6.67022 6.76001 6.92554 7.04193 7.34597 7.49352 7.94297 8.01363 8.33138 8.68735 9.04404 9.26067 9.79313 10.59129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002002 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.374289 B =13985.129965 C =14885.266317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.438 5.438 5 C -0.315 4.315 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.452 3.548 14 O -0.580 6.580 15 C -0.145 4.145 16 C 0.138 3.862 17 N -0.726 5.726 18 C 0.579 3.421 19 O -0.517 6.517 20 C 0.022 3.978 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.060 4.060 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.132 4.132 27 C 0.112 3.888 28 N -0.578 5.578 29 H 0.418 0.582 30 H 0.199 0.801 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 19.691 -13.072 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.156 5.156 5 C -0.442 4.442 6 H 0.124 0.876 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.240 3.760 14 O -0.464 6.464 15 C -0.186 4.186 16 C 0.016 3.984 17 N -0.376 5.376 18 C 0.365 3.635 19 O -0.392 6.392 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.153 4.153 27 C 0.002 3.998 28 N -0.183 5.183 29 H 0.256 0.744 30 H 0.216 0.784 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.226 0.774 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.451 18.411 -13.476 22.947 hybrid contribution -0.402 -0.102 1.704 1.754 sum -2.853 18.308 -11.772 21.952 Atomic orbital electron populations 1.24303 0.95404 1.03867 1.04349 1.23198 0.94355 0.97007 0.97037 1.18314 0.84232 0.87603 0.99182 1.43705 1.55706 1.12189 1.04024 1.19702 1.31219 0.96970 0.96300 0.87612 1.25303 0.95217 0.98637 0.98213 1.70074 1.20886 1.42395 1.16847 0.85978 0.79086 0.80544 0.79365 1.20231 1.21091 1.19399 1.19684 0.84931 0.88964 0.82429 1.90568 1.51004 1.40758 1.64042 1.21736 1.03131 0.99122 0.94599 1.21150 1.02385 0.84330 0.90559 1.45999 1.67448 1.17366 1.06830 1.17164 0.78579 0.85817 0.81981 1.90885 1.45530 1.37858 1.64890 1.20257 1.07551 0.87739 0.93189 1.20935 1.03217 0.95545 0.93884 1.18228 1.06295 0.94827 0.93043 1.20430 0.97240 0.93481 0.96747 1.20645 1.02899 0.95717 0.97761 1.20880 0.98916 0.99388 0.91759 1.20085 1.04619 0.91162 0.99435 1.18344 1.01834 0.91154 0.88499 1.41958 1.56983 1.10487 1.08893 0.74394 0.78373 0.86865 0.92127 0.92051 0.89861 0.89556 0.90212 0.90162 0.77388 0.82565 0.85701 0.85896 0.85590 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.06 19.25 29.55 0.57 -4.49 16 2 C -0.11 -2.39 10.95 -37.12 -0.41 -2.80 16 3 C 0.23 4.73 4.91 -6.83 -0.03 4.70 16 4 N -0.44 -10.50 2.60 -117.94 -0.31 -10.80 16 5 C -0.31 -8.38 9.35 -14.94 -0.14 -8.52 16 6 H 0.11 2.99 7.36 -52.49 -0.39 2.61 16 7 C 0.03 0.77 4.90 -17.47 -0.09 0.68 16 8 N -0.86 -21.91 9.39 55.50 0.52 -21.39 16 9 Si 0.92 20.03 29.60 -169.99 -5.03 15.00 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.45 10.32 7.57 -10.98 -0.08 10.24 16 14 O -0.58 -15.45 15.62 5.55 0.09 -15.36 16 15 C -0.15 -2.36 4.42 -27.88 -0.12 -2.48 16 16 C 0.14 2.23 4.96 -4.04 -0.02 2.21 16 17 N -0.73 -9.01 5.55 -61.50 -0.34 -9.36 16 18 C 0.58 8.17 7.80 -12.69 -0.10 8.07 16 19 O -0.52 -9.33 16.84 5.23 0.09 -9.24 16 20 C 0.02 0.26 6.97 -82.29 -0.57 -0.31 16 21 C -0.11 -1.27 10.53 -39.16 -0.41 -1.68 16 22 C -0.12 -1.26 6.16 -106.93 -0.66 -1.92 16 23 C -0.06 -0.52 10.06 -39.53 -0.40 -0.92 16 24 C -0.15 -1.11 9.97 -39.97 -0.40 -1.51 16 25 C -0.09 -0.63 10.01 -39.53 -0.40 -1.03 16 26 C -0.13 -1.04 10.08 -39.42 -0.40 -1.44 16 27 C 0.11 1.09 7.25 -83.98 -0.61 0.48 16 28 N -0.58 -5.25 6.07 -7.36 -0.04 -5.29 16 29 H 0.42 2.56 8.12 -40.82 -0.33 2.23 16 30 H 0.20 3.13 7.80 -54.10 -0.42 2.71 16 31 H 0.11 2.50 6.34 -51.93 -0.33 2.17 16 32 H 0.06 0.99 6.67 -51.93 -0.35 0.64 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.12 7.41 -51.93 -0.39 0.73 16 35 H 0.09 1.33 7.52 -51.93 -0.39 0.94 16 36 H 0.08 1.47 8.10 -51.92 -0.42 1.05 16 37 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 38 H 0.39 3.49 7.53 -40.82 -0.31 3.18 16 39 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -33.84 375.69 -8.62 -42.46 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.99 Total: 9.04 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -4.26 Total: -0.73 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.17 Total: -46.84 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.84 -8.62 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538103516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.288 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds