Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47318 * 34.57559 * 3 2 1 5 5 C 1.37088 * 120.00491 * 264.38933 * 4 3 2 6 6 H 1.08001 * 120.00508 * 196.17628 * 5 4 3 7 7 C 1.38957 * 119.99695 * 16.17847 * 5 4 3 8 8 N 1.31407 * 119.99748 * 20.84922 * 7 5 4 9 9 Si 1.86803 * 119.99732 * 200.84666 * 7 5 4 10 10 H 1.48495 * 109.46847 * 84.94663 * 9 7 5 11 11 H 1.48505 * 109.46627 * 204.94138 * 9 7 5 12 12 H 1.48497 * 109.47512 * 324.94281 * 9 7 5 13 13 C 1.34780 * 119.99435 * 84.38679 * 4 3 2 14 14 O 1.21292 * 119.99621 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00325 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47178 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47345 * 179.97438 * 16 15 13 18 18 C 1.34775 * 120.00458 * 179.97438 * 17 16 15 19 19 O 1.21649 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.47051 * 120.00198 * 180.02562 * 18 17 16 21 21 C 1.35867 * 125.43192 * 180.02562 * 20 18 17 22 22 C 1.41586 * 107.72832 * 179.97438 * 21 20 18 23 23 C 1.40107 * 133.37304 * 179.97438 * 22 21 20 24 24 C 1.36447 * 119.82313 * 180.02562 * 23 22 21 25 25 C 1.38939 * 120.61816 * 0.06717 * 24 23 22 26 26 C 1.37675 * 120.64767 * 359.90344 * 25 24 23 27 27 C 1.39220 * 119.80917 * 0.06161 * 26 25 24 28 28 N 1.37487 * 133.17857 * 179.97438 * 27 26 25 29 29 H 0.96996 * 125.60845 * 0.04755 * 28 27 26 30 30 H 4.40643 * 5.51374 * 180.02562 * 4 1 2 31 31 H 1.08997 * 109.46951 * 274.57605 * 3 2 1 32 32 H 1.08998 * 109.47088 * 154.58007 * 3 2 1 33 33 H 0.97008 * 119.99495 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47302 * 59.99667 * 15 13 4 35 35 H 1.09000 * 109.46655 * 299.99660 * 15 13 4 36 36 H 1.09010 * 109.46905 * 59.99790 * 16 15 13 37 37 H 1.08997 * 109.47057 * 300.00302 * 16 15 13 38 38 H 0.97007 * 119.99601 * 359.97438 * 17 16 15 39 39 H 1.08005 * 126.13465 * 359.96665 * 21 20 18 40 40 H 1.07989 * 120.08807 * 0.02842 * 23 22 21 41 41 H 1.08005 * 119.68761 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.67244 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.09007 * 180.34248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1364 -0.7838 5 6 3.4733 -2.3070 -0.1558 6 1 4.0692 -3.0446 -0.6729 7 6 3.0497 -2.5447 1.1461 8 7 2.0215 -1.8869 1.6328 9 14 3.9419 -3.7992 2.2042 10 1 5.1129 -3.1564 2.8527 11 1 3.0184 -4.3129 3.2475 12 1 4.4034 -4.9256 1.3536 13 6 3.2518 -1.0314 -2.1224 14 8 3.6570 -1.9726 -2.7714 15 6 2.8802 0.2556 -2.8127 16 6 3.1049 0.1097 -4.3191 17 7 2.7431 1.3606 -4.9903 18 6 2.8609 1.4658 -6.3288 19 8 3.2673 0.5218 -6.9796 20 6 2.4983 2.7216 -7.0024 21 6 2.5730 2.9481 -8.3400 22 6 2.1352 4.2733 -8.5780 23 6 1.9975 5.0476 -9.7376 24 6 1.5377 6.3290 -9.6473 25 6 1.2050 6.8762 -8.4143 26 6 1.3310 6.1354 -7.2607 27 6 1.7973 4.8254 -7.3270 28 7 2.0262 3.8590 -6.3762 29 1 1.8806 3.9594 -5.4225 30 1 -1.0499 -0.0001 -0.0003 31 1 3.0093 -0.0812 1.0244 32 1 3.0089 0.9290 -0.4411 33 1 1.7256 -2.0531 2.5415 34 1 3.5009 1.0656 -2.4299 35 1 1.8309 0.4805 -2.6217 36 1 2.4844 -0.7005 -4.7023 37 1 4.1543 -0.1151 -4.5098 38 1 2.4188 2.1132 -4.4713 39 1 2.9065 2.2435 -9.0875 40 1 2.2546 4.6312 -10.7002 41 1 1.4328 6.9240 -10.5425 42 1 0.8429 7.8923 -8.3605 43 1 1.0645 6.5680 -6.3077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538103516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = 34.858431 kcal Electronic energy + Delta-G solvation = -27270.499772 eV Core-core repulsion = 23282.410481 eV Total energy + Delta-G solvation = -3988.089291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59636 -40.84443 -40.29121 -37.70551 -37.25885 -36.35178 -34.08286 -33.15461 -33.03809 -32.18677 -30.36896 -29.92327 -28.28954 -27.01848 -25.50661 -23.82053 -23.14167 -22.19508 -21.47032 -20.67746 -19.72242 -19.39579 -18.47485 -18.19798 -18.00716 -17.06037 -16.96413 -16.68493 -16.28148 -16.22868 -15.92018 -15.53948 -15.40335 -15.04446 -14.79613 -14.73829 -14.54667 -14.31032 -13.96774 -13.95469 -13.84284 -13.50011 -12.98687 -12.72777 -12.61804 -12.59405 -12.52100 -12.39152 -12.16687 -11.81267 -11.50941 -11.21008 -11.08851 -10.90704 -10.65186 -10.39342 -10.35791 -9.85424 -9.23594 -8.77453 -8.34172 -5.93537 -0.26288 0.68722 1.05795 1.35739 1.42336 1.51822 1.72179 1.87441 1.96731 2.14980 2.20020 2.32714 2.38551 2.97583 3.03345 3.21349 3.57104 3.76342 3.78803 3.88741 4.03046 4.10809 4.11482 4.22341 4.37766 4.44296 4.48991 4.58788 4.71687 4.78974 4.84766 4.89116 4.94374 5.02330 5.14711 5.16868 5.44104 5.46879 5.47142 5.55633 5.66709 5.71796 6.03004 6.12961 6.29853 6.42681 6.49136 6.94624 7.13033 7.14851 7.40615 7.95937 8.63849 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002002 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.374289 B =13985.129965 C =14885.266317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.230 3.770 4 N -0.450 5.450 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.004 3.996 8 N -0.870 5.870 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.439 3.561 14 O -0.631 6.631 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.706 5.706 18 C 0.581 3.419 19 O -0.566 6.566 20 C 0.008 3.992 21 C -0.118 4.118 22 C -0.146 4.146 23 C -0.074 4.074 24 C -0.150 4.150 25 C -0.085 4.085 26 C -0.139 4.139 27 C 0.104 3.896 28 N -0.565 5.565 29 H 0.431 0.569 30 H 0.230 0.770 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.272 0.728 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 23.260 -12.477 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.154 4.154 3 C 0.108 3.892 4 N -0.167 5.167 5 C -0.479 4.479 6 H 0.091 0.909 7 C -0.200 4.200 8 N -0.507 5.507 9 Si 0.806 3.194 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.229 3.771 14 O -0.519 6.519 15 C -0.165 4.165 16 C 0.027 3.973 17 N -0.358 5.358 18 C 0.369 3.631 19 O -0.444 6.444 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.169 4.169 25 C -0.104 4.104 26 C -0.160 4.160 27 C -0.006 4.006 28 N -0.172 5.172 29 H 0.272 0.728 30 H 0.247 0.753 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.251 0.749 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.174 0.826 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.897 22.059 -12.819 25.809 hybrid contribution -0.047 -1.109 1.442 1.819 sum -3.945 20.950 -11.377 24.164 Atomic orbital electron populations 1.25135 0.96359 1.02274 1.02734 1.23452 0.94957 0.98467 0.98528 1.18425 0.84507 0.88060 0.98190 1.43906 1.55702 1.12362 1.04776 1.19545 1.32690 0.98207 0.97421 0.90879 1.25913 0.95483 1.00188 0.98384 1.70159 1.20842 1.42743 1.16990 0.85123 0.78449 0.78175 0.77613 1.18900 1.20275 1.20667 1.20735 0.83521 0.90609 0.82205 1.90534 1.52989 1.43223 1.65117 1.21581 1.04814 0.96537 0.93538 1.20745 1.00595 0.85105 0.90819 1.45659 1.66899 1.16797 1.06479 1.17462 0.77552 0.86067 0.82038 1.90857 1.47844 1.39773 1.65945 1.19772 1.09548 0.87675 0.93206 1.21078 1.03144 0.96360 0.94005 1.18443 1.07498 0.94570 0.94470 1.20694 0.97675 0.94168 0.96773 1.21025 1.01518 0.95246 0.99114 1.21337 0.97316 1.00565 0.91222 1.20438 1.04252 0.90285 1.01004 1.18653 1.01867 0.91917 0.88180 1.41801 1.56385 1.09426 1.09550 0.72780 0.75289 0.88753 0.87602 0.91772 0.85865 0.87651 0.93137 0.92210 0.74868 0.83152 0.84618 0.83417 0.82606 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.96 19.25 74.32 1.43 -7.53 16 2 C -0.15 -6.12 10.95 31.12 0.34 -5.78 16 3 C 0.23 9.21 4.91 84.57 0.42 9.63 16 4 N -0.45 -21.80 2.60 -645.43 -1.68 -23.48 16 5 C -0.35 -19.29 9.35 84.04 0.79 -18.51 16 6 H 0.07 4.40 7.36 -2.91 -0.02 4.38 16 7 C 0.00 0.20 4.90 84.93 0.42 0.62 16 8 N -0.87 -43.73 9.39 21.66 0.20 -43.53 16 9 Si 0.98 41.41 29.60 68.60 2.03 43.44 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.44 20.43 7.57 87.66 0.66 21.09 16 14 O -0.63 -35.37 15.62 -3.07 -0.05 -35.42 16 15 C -0.12 -3.89 4.42 29.85 0.13 -3.76 16 16 C 0.15 4.95 4.96 86.38 0.43 5.38 16 17 N -0.71 -17.08 5.55 -466.73 -2.59 -19.67 16 18 C 0.58 16.73 7.80 86.55 0.68 17.40 16 19 O -0.57 -21.58 16.84 -4.18 -0.07 -21.65 16 20 C 0.01 0.18 6.97 39.91 0.28 0.46 16 21 C -0.12 -2.82 10.53 22.55 0.24 -2.58 16 22 C -0.15 -2.98 6.16 -21.36 -0.13 -3.11 16 23 C -0.07 -1.18 10.06 22.31 0.22 -0.96 16 24 C -0.15 -1.76 9.97 22.02 0.22 -1.54 16 25 C -0.09 -0.88 10.01 22.30 0.22 -0.66 16 26 C -0.14 -1.75 10.08 22.37 0.23 -1.52 16 27 C 0.10 1.84 7.25 39.13 0.28 2.13 16 28 N -0.57 -9.37 6.07 -177.19 -1.08 -10.45 16 29 H 0.43 4.23 8.12 -92.71 -0.75 3.48 16 30 H 0.23 6.44 7.80 -4.42 -0.03 6.40 16 31 H 0.09 4.11 6.34 -2.39 -0.02 4.10 16 32 H 0.11 3.15 6.67 -2.39 -0.02 3.14 16 33 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 34 H 0.12 2.90 7.41 -2.39 -0.02 2.88 16 35 H 0.11 2.97 7.52 -2.39 -0.02 2.95 16 36 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 37 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 38 H 0.41 6.39 7.53 -92.70 -0.70 5.70 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 40 H 0.14 1.70 8.06 -2.92 -0.02 1.68 16 41 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -78.07 375.69 3.24 -74.83 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.38 Total: 25.17 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.85 Total: 10.76 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -5.14 Total: -97.13 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.12 Total: -57.07 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -78.07 3.24 -74.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538103516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.691 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds