Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47280 * 2 1 4 4 N 1.30173 * 126.80871 * 270.02594 * 3 2 1 5 5 O 1.20919 * 111.60633 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.57095 * 359.76538 * 5 4 3 7 7 C 1.35456 * 106.44470 * 0.38058 * 6 5 4 8 8 C 1.50694 * 128.00712 * 179.91465 * 7 6 5 9 9 N 1.46903 * 109.47135 * 259.67086 * 8 7 6 10 10 C 1.46897 * 111.00106 * 180.02562 * 9 8 7 11 11 H 1.08994 * 112.91030 * 23.75414 * 10 9 8 12 12 C 1.53787 * 113.61213 * 155.00606 * 10 9 8 13 13 C 1.53779 * 87.07963 * 139.98051 * 12 10 9 14 14 H 1.09007 * 113.61383 * 220.01369 * 13 12 10 15 15 N 1.46506 * 113.61276 * 89.20243 * 13 12 10 16 16 C 1.34776 * 119.99649 * 155.00300 * 15 13 12 17 17 O 1.21278 * 120.00456 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99546 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46940 * 179.97438 * 18 16 15 20 20 C 1.76208 * 100.00028 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99702 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00066 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47509 * 59.99672 * 24 22 20 26 26 H 1.48500 * 109.47380 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46788 * 299.99541 * 24 22 20 28 28 C 1.53779 * 87.08402 * 334.56577 * 13 12 10 29 29 H 1.08997 * 109.46671 * 299.99353 * 1 2 3 30 30 H 1.09000 * 109.46978 * 59.99177 * 1 2 3 31 31 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47080 * 240.00475 * 2 1 3 33 33 H 1.08999 * 109.47672 * 120.00542 * 2 1 3 34 34 H 1.07994 * 126.78425 * 180.28673 * 6 5 4 35 35 H 1.09001 * 109.47256 * 139.67658 * 8 7 6 36 36 H 1.08998 * 109.47421 * 19.67514 * 8 7 6 37 37 H 1.00901 * 110.99611 * 56.04511 * 9 8 7 38 38 H 1.08997 * 113.61028 * 254.53011 * 12 10 9 39 39 H 1.09000 * 113.61529 * 25.43150 * 12 10 9 40 40 H 0.96998 * 119.99623 * 334.98964 * 15 13 12 41 41 H 1.09001 * 109.47389 * 299.99123 * 18 16 15 42 42 H 1.09004 * 109.47734 * 59.99550 * 18 16 15 43 43 H 0.97000 * 119.99834 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.61557 * 270.88569 * 28 13 12 45 45 H 1.09004 * 113.61501 * 139.97990 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7251 6 6 2.7255 3.3983 0.6070 7 6 2.3147 2.2192 1.1322 8 6 2.1828 1.8470 2.5865 9 7 3.3484 1.0523 2.9962 10 6 3.2537 0.6699 4.4114 11 1 2.2283 0.6613 4.7809 12 6 4.0449 -0.6018 4.7601 13 6 4.4524 0.1040 6.0641 14 1 5.4904 -0.0691 6.3484 15 7 3.5157 -0.1171 7.1687 16 6 3.9417 -0.0185 8.4435 17 8 5.1006 0.2529 8.6764 18 6 2.9780 -0.2455 9.5796 19 16 3.8452 -0.0445 11.1556 20 6 2.5207 -0.3551 12.2755 21 1 1.5360 -0.5851 11.8965 22 6 2.7431 -0.3040 13.6446 23 7 3.9433 -0.0230 14.1064 24 14 1.3391 -0.6339 14.8317 25 1 0.8104 -2.0029 14.6050 26 1 1.8337 -0.5197 16.2273 27 1 0.2572 0.3581 14.6067 28 6 4.2303 1.4326 5.3222 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.0306 4.2783 1.1537 35 1 1.2749 1.2613 2.7307 36 1 2.1304 2.7530 3.1901 37 1 4.2073 1.5487 2.8120 38 1 3.4159 -1.4782 4.9162 39 1 4.8811 -0.7939 4.0879 40 1 2.5889 -0.3344 6.9824 41 1 2.1654 0.4783 9.5169 42 1 2.5714 -1.2548 9.5152 43 1 4.0987 0.0123 15.0632 44 1 5.1173 1.7966 4.8035 45 1 3.7511 2.1985 5.9320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566782520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = 37.952773 kcal Electronic energy + Delta-G solvation = -25619.580644 eV Core-core repulsion = 21767.069485 eV Total energy + Delta-G solvation = -3852.511159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.30471 -40.25471 -38.37224 -36.56373 -34.84121 -33.07351 -32.45004 -31.73004 -31.43139 -29.08297 -26.62190 -25.93538 -25.50826 -24.81192 -23.38316 -21.84102 -21.29453 -20.85854 -19.59771 -17.97393 -17.86019 -17.77093 -16.65538 -16.22324 -15.98152 -15.53674 -15.15128 -15.01291 -14.88534 -14.82503 -14.31133 -14.05018 -13.83781 -13.53808 -13.24307 -13.08177 -12.96890 -12.78225 -12.66076 -12.53827 -12.01255 -11.98841 -11.84062 -11.81562 -11.25921 -11.07130 -11.06010 -10.93545 -10.79405 -10.64318 -10.24090 -9.91016 -9.84240 -9.45679 -9.08795 -8.98663 -8.75370 -8.27132 -6.52871 -6.23820 -3.94814 1.08651 1.80222 2.86030 2.97573 3.01771 3.21633 3.25634 3.28626 3.64766 3.67322 3.88918 4.11014 4.18220 4.27592 4.37232 4.41869 4.63514 4.69515 4.72828 4.84604 4.87560 4.95085 5.05086 5.09767 5.11286 5.24956 5.30771 5.39162 5.45252 5.48872 5.56054 5.59838 5.62481 5.65275 5.75006 5.76238 5.83390 5.84843 5.96172 6.09876 6.51848 6.70026 6.89735 7.56874 7.65839 7.90775 8.32623 8.56585 9.21319 10.83507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.592305 B =16985.347078 C =17411.895041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.041 3.959 4 N -0.369 5.369 5 O 0.096 5.904 6 C -0.055 4.055 7 C -0.196 4.196 8 C 0.135 3.865 9 N -0.673 5.673 10 C 0.066 3.934 11 H 0.098 0.902 12 C -0.132 4.132 13 C 0.125 3.875 14 H 0.104 0.896 15 N -0.722 5.722 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.181 4.181 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.214 0.786 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.345 0.655 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 3.303 -28.720 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.118 4.118 4 N -0.074 5.074 5 O 0.032 5.968 6 C -0.138 4.138 7 C -0.201 4.201 8 C 0.006 3.994 9 N -0.304 5.304 10 C -0.044 4.044 11 H 0.116 0.884 12 C -0.171 4.171 13 C 0.018 3.982 14 H 0.122 0.878 15 N -0.375 5.375 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.221 4.221 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.231 0.769 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.845 3.001 -29.721 30.119 hybrid contribution -2.480 0.354 1.704 3.030 sum -6.325 3.355 -28.017 28.917 Atomic orbital electron populations 1.21717 0.94105 1.02390 1.02163 1.19973 0.96108 0.88168 1.04310 1.23499 1.01136 0.99155 0.88039 1.73861 1.16455 0.92809 1.24323 1.84835 1.62277 1.26795 1.22877 1.25858 1.02939 1.01090 0.83908 1.21200 1.07542 0.93804 0.97527 1.20144 0.95125 0.96558 0.87602 1.60448 1.04569 1.46492 1.18845 1.23141 0.98836 0.96513 0.85887 0.88442 1.23441 1.00790 0.97212 0.95694 1.21596 0.95510 0.95202 0.85905 0.87798 1.45715 1.12916 1.73845 1.05038 1.20338 0.89025 0.75574 0.82997 1.90702 1.18592 1.45728 1.83880 1.23536 1.02039 1.04799 1.00074 1.85409 1.14918 1.92258 0.90709 1.22825 0.96887 1.55746 0.93047 0.90969 1.24994 0.96516 0.94617 0.97440 1.70009 1.20592 1.45276 1.14376 0.86221 0.81138 0.78932 0.79193 1.19930 1.20795 1.19949 1.24159 1.00216 0.98364 0.99382 0.92412 0.92673 0.91539 0.90347 0.88582 0.76926 0.89521 0.93580 0.83561 0.90659 0.88484 0.76835 0.89247 0.89156 0.92107 0.89179 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.48 16 2 C -0.05 -0.32 6.44 -27.88 -0.18 -0.50 16 3 C 0.04 0.35 6.58 -82.10 -0.54 -0.19 16 4 N -0.37 -3.71 12.07 33.42 0.40 -3.30 16 5 O 0.10 0.82 11.20 17.18 0.19 1.01 16 6 C -0.06 -0.32 12.26 29.74 0.36 0.04 16 7 C -0.20 -1.33 5.84 -104.42 -0.61 -1.94 16 8 C 0.13 0.76 6.02 -4.98 -0.03 0.73 16 9 N -0.67 -4.12 6.61 -107.13 -0.71 -4.82 16 10 C 0.07 0.44 4.06 -66.90 -0.27 0.17 16 11 H 0.10 0.63 7.87 -51.93 -0.41 0.22 16 12 C -0.13 -1.01 7.63 -25.92 -0.20 -1.21 16 13 C 0.12 1.32 4.32 -67.12 -0.29 1.03 16 14 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16 15 N -0.72 -8.84 5.27 -53.01 -0.28 -9.12 16 16 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 17 O -0.52 -11.38 15.46 5.56 0.09 -11.29 16 18 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 24 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.18 -1.52 7.50 -25.92 -0.19 -1.71 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.35 2.03 8.19 -39.29 -0.32 1.71 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.72 8.70 -40.82 -0.36 3.36 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 0.68 7.82 -51.93 -0.41 0.27 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -34.95 396.72 -8.99 -43.94 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.92 Total: 0.67 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.25 Total: -10.20 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.15 Total: -42.44 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.28 Total: -10.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.95 -8.99 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.896 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds