Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47280 * 2 1 4 4 N 1.30173 * 126.80871 * 270.02594 * 3 2 1 5 5 O 1.20919 * 111.60633 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.57095 * 359.76538 * 5 4 3 7 7 C 1.35456 * 106.44470 * 0.38058 * 6 5 4 8 8 C 1.50694 * 128.00712 * 179.91465 * 7 6 5 9 9 N 1.46903 * 109.47135 * 259.67086 * 8 7 6 10 10 C 1.46897 * 111.00106 * 180.02562 * 9 8 7 11 11 H 1.08994 * 112.91030 * 23.75414 * 10 9 8 12 12 C 1.53787 * 113.61213 * 155.00606 * 10 9 8 13 13 C 1.53779 * 87.07963 * 139.98051 * 12 10 9 14 14 H 1.09007 * 113.61383 * 220.01369 * 13 12 10 15 15 N 1.46506 * 113.61276 * 89.20243 * 13 12 10 16 16 C 1.34776 * 119.99649 * 155.00300 * 15 13 12 17 17 O 1.21278 * 120.00456 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99546 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46940 * 179.97438 * 18 16 15 20 20 C 1.76208 * 100.00028 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99702 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00066 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47509 * 59.99672 * 24 22 20 26 26 H 1.48500 * 109.47380 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46788 * 299.99541 * 24 22 20 28 28 C 1.53779 * 87.08402 * 334.56577 * 13 12 10 29 29 H 1.08997 * 109.46671 * 299.99353 * 1 2 3 30 30 H 1.09000 * 109.46978 * 59.99177 * 1 2 3 31 31 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47080 * 240.00475 * 2 1 3 33 33 H 1.08999 * 109.47672 * 120.00542 * 2 1 3 34 34 H 1.07994 * 126.78425 * 180.28673 * 6 5 4 35 35 H 1.09001 * 109.47256 * 139.67658 * 8 7 6 36 36 H 1.08998 * 109.47421 * 19.67514 * 8 7 6 37 37 H 1.00901 * 110.99611 * 56.04511 * 9 8 7 38 38 H 1.08997 * 113.61028 * 254.53011 * 12 10 9 39 39 H 1.09000 * 113.61529 * 25.43150 * 12 10 9 40 40 H 0.96998 * 119.99623 * 334.98964 * 15 13 12 41 41 H 1.09001 * 109.47389 * 299.99123 * 18 16 15 42 42 H 1.09004 * 109.47734 * 59.99550 * 18 16 15 43 43 H 0.97000 * 119.99834 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.61557 * 270.88569 * 28 13 12 45 45 H 1.09004 * 113.61501 * 139.97990 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7251 6 6 2.7255 3.3983 0.6070 7 6 2.3147 2.2192 1.1322 8 6 2.1828 1.8470 2.5865 9 7 3.3484 1.0523 2.9962 10 6 3.2537 0.6699 4.4114 11 1 2.2283 0.6613 4.7809 12 6 4.0449 -0.6018 4.7601 13 6 4.4524 0.1040 6.0641 14 1 5.4904 -0.0691 6.3484 15 7 3.5157 -0.1171 7.1687 16 6 3.9417 -0.0185 8.4435 17 8 5.1006 0.2529 8.6764 18 6 2.9780 -0.2455 9.5796 19 16 3.8452 -0.0445 11.1556 20 6 2.5207 -0.3551 12.2755 21 1 1.5360 -0.5851 11.8965 22 6 2.7431 -0.3040 13.6446 23 7 3.9433 -0.0230 14.1064 24 14 1.3391 -0.6339 14.8317 25 1 0.8104 -2.0029 14.6050 26 1 1.8337 -0.5197 16.2273 27 1 0.2572 0.3581 14.6067 28 6 4.2303 1.4326 5.3222 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.0306 4.2783 1.1537 35 1 1.2749 1.2613 2.7307 36 1 2.1304 2.7530 3.1901 37 1 4.2073 1.5487 2.8120 38 1 3.4159 -1.4782 4.9162 39 1 4.8811 -0.7939 4.0879 40 1 2.5889 -0.3344 6.9824 41 1 2.1654 0.4783 9.5169 42 1 2.5714 -1.2548 9.5152 43 1 4.0987 0.0123 15.0632 44 1 5.1173 1.7966 4.8035 45 1 3.7511 2.1985 5.9320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566782520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = 12.923548 kcal Electronic energy + Delta-G solvation = -25620.665992 eV Core-core repulsion = 21767.069485 eV Total energy + Delta-G solvation = -3853.596508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.87546 -41.22234 -39.49590 -37.15202 -35.51359 -34.57697 -34.05028 -32.40532 -31.99712 -30.49854 -27.68580 -27.15925 -26.60095 -25.32338 -24.11570 -22.40505 -22.05771 -21.79499 -20.45071 -19.81852 -18.54093 -18.32449 -17.95939 -17.09048 -16.86856 -16.73164 -16.50363 -16.26075 -15.79714 -15.64340 -15.43625 -14.88761 -14.72452 -14.49434 -14.30979 -14.14949 -13.83650 -13.58401 -13.42649 -13.31509 -13.16178 -13.13000 -12.85821 -12.66364 -12.50542 -12.43257 -12.34910 -11.84093 -11.74092 -11.61072 -11.33540 -11.12073 -10.95078 -10.81471 -10.42390 -10.26875 -10.04476 -9.28786 -8.65921 -8.33748 -6.11916 0.60013 1.25466 1.27657 1.44565 1.47732 1.57243 1.61057 2.25987 2.30175 2.43400 3.00322 3.15901 3.32846 3.36917 3.59431 3.61954 3.75875 3.92140 3.95888 4.01629 4.12851 4.19897 4.32391 4.38423 4.39689 4.47751 4.52005 4.61628 4.70909 4.79890 4.83906 4.86441 4.92593 5.01104 5.04014 5.10307 5.13554 5.16937 5.18108 5.35343 5.42463 5.60466 6.09577 6.20390 6.43112 6.53648 7.07474 7.27544 7.37791 8.75101 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.592305 B =16985.347078 C =17411.895041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C 0.031 3.969 4 N -0.406 5.406 5 O 0.081 5.919 6 C -0.043 4.043 7 C -0.206 4.206 8 C 0.140 3.860 9 N -0.674 5.674 10 C 0.084 3.916 11 H 0.109 0.891 12 C -0.119 4.119 13 C 0.107 3.893 14 H 0.076 0.924 15 N -0.694 5.694 16 C 0.536 3.464 17 O -0.566 6.566 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.348 0.652 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.099 0.901 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 3.155 -29.583 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.128 4.128 4 N -0.114 5.114 5 O 0.020 5.980 6 C -0.125 4.125 7 C -0.211 4.211 8 C 0.011 3.989 9 N -0.304 5.304 10 C -0.027 4.027 11 H 0.127 0.873 12 C -0.157 4.157 13 C 0.001 3.999 14 H 0.094 0.906 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.214 4.214 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.235 2.856 -30.652 31.410 hybrid contribution -1.715 0.419 1.823 2.538 sum -7.951 3.275 -28.829 30.084 Atomic orbital electron populations 1.21682 0.93405 1.03088 1.01713 1.20013 0.96661 0.87508 1.04268 1.23883 1.00728 0.99767 0.88457 1.73861 1.18236 0.93663 1.25596 1.84790 1.62491 1.26428 1.24314 1.26570 1.01089 1.01970 0.82915 1.21357 1.08086 0.93900 0.97713 1.20145 0.94848 0.97034 0.86898 1.60406 1.05005 1.46942 1.18074 1.22992 0.98733 0.95011 0.85927 0.87337 1.23369 1.01184 0.97792 0.93396 1.21813 0.93816 0.98084 0.86219 0.90598 1.45411 1.14135 1.71661 1.03520 1.20071 0.87885 0.75506 0.84320 1.90691 1.20451 1.48545 1.84765 1.23375 1.01829 1.06595 0.96272 1.85600 1.18158 1.92741 0.96091 1.23178 0.97134 1.55538 0.93608 0.89819 1.26131 0.99427 0.94073 0.99554 1.70182 1.23176 1.46606 1.14799 0.85008 0.77404 0.79392 0.76230 1.18659 1.20504 1.18612 1.24141 1.01197 0.96874 0.99194 0.92075 0.93843 0.90265 0.90931 0.87982 0.73338 0.89226 0.92364 0.83218 0.89855 0.87905 0.74633 0.87108 0.87142 0.92024 0.88246 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.90 71.98 0.71 -0.75 16 2 C -0.05 -0.58 6.44 29.85 0.19 -0.39 16 3 C 0.03 0.49 6.58 43.58 0.29 0.77 16 4 N -0.41 -8.01 12.07 -49.56 -0.60 -8.61 16 5 O 0.08 1.32 11.20 71.66 0.80 2.12 16 6 C -0.04 -0.41 12.26 67.18 0.82 0.41 16 7 C -0.21 -2.35 5.84 -19.73 -0.12 -2.46 16 8 C 0.14 1.15 6.02 85.55 0.51 1.66 16 9 N -0.67 -6.16 6.61 -492.86 -3.26 -9.41 16 10 C 0.08 0.85 4.06 45.45 0.18 1.03 16 11 H 0.11 0.94 7.87 -2.39 -0.02 0.92 16 12 C -0.12 -1.49 7.63 31.12 0.24 -1.25 16 13 C 0.11 2.11 4.32 45.52 0.20 2.30 16 14 H 0.08 1.97 7.46 -2.38 -0.02 1.95 16 15 N -0.69 -15.72 5.27 -440.03 -2.32 -18.04 16 16 C 0.54 18.86 7.85 87.66 0.69 19.55 16 17 O -0.57 -25.68 15.46 -3.02 -0.05 -25.72 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 20 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 24 Si 1.00 42.95 29.55 68.60 2.03 44.97 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 28 C -0.17 -2.56 7.50 31.12 0.23 -2.32 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 35 H 0.09 0.72 8.13 -2.39 -0.02 0.70 16 36 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.35 3.06 8.19 -89.69 -0.73 2.32 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.42 6.44 8.70 -92.71 -0.81 5.63 16 41 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.10 1.29 7.82 -2.39 -0.02 1.28 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -79.47 396.72 0.71 -78.76 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.53 Total: 15.59 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.51 Total: -14.83 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -5.89 Total: -91.35 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.76 Total: -23.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -79.47 0.71 -78.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.680 kcal (2) G-P(sol) polarization free energy of solvation -79.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds