Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99989 * 2 1 4 4 N 1.46500 * 109.47241 * 124.99307 * 3 2 1 5 5 C 1.46763 * 124.35160 * 270.00569 * 4 3 2 6 6 C 1.54832 * 105.49300 * 197.05872 * 5 4 3 7 7 C 1.54630 * 101.60622 * 334.56422 * 6 5 4 8 8 H 1.08998 * 110.49190 * 143.56920 * 7 6 5 9 9 N 1.46898 * 110.48693 * 266.08825 * 7 6 5 10 10 C 1.47961 * 111.00220 * 178.16193 * 9 7 6 11 11 C 1.53940 * 86.17865 * 222.41049 * 10 9 7 12 12 N 1.46499 * 113.73302 * 138.07181 * 11 10 9 13 13 C 1.34784 * 119.99893 * 155.00068 * 12 11 10 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 11 16 16 S 1.81008 * 109.46759 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99946 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99702 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47003 * 120.00084 * 21 19 17 24 24 H 1.48500 * 109.46787 * 239.99933 * 21 19 17 25 25 C 1.47956 * 111.00496 * 78.79240 * 9 7 6 26 26 C 1.34425 * 124.34570 * 90.02502 * 4 3 2 27 27 O 1.21279 * 124.93976 * 359.53878 * 26 4 3 28 28 H 1.08001 * 120.00607 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99812 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46458 * 4.99457 * 3 2 1 32 32 H 1.08999 * 109.47013 * 244.99654 * 3 2 1 33 33 H 1.09000 * 110.24242 * 316.03021 * 5 4 3 34 34 H 1.08998 * 110.24880 * 77.94664 * 5 4 3 35 35 H 1.08996 * 111.08099 * 216.48660 * 6 5 4 36 36 H 1.09000 * 111.01177 * 92.61175 * 6 5 4 37 37 H 1.08989 * 113.76746 * 108.09585 * 10 9 7 38 38 H 1.09007 * 113.85687 * 336.73513 * 10 9 7 39 39 H 1.08994 * 113.73620 * 269.25094 * 11 10 9 40 40 H 0.97005 * 120.00261 * 335.00280 * 12 11 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 42 42 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 43 43 H 0.97000 * 119.99806 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.75781 * 23.27068 * 25 9 7 45 45 H 1.08992 * 113.76166 * 251.89915 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6598 1.8434 2.4660 6 6 4.0183 2.0788 3.1706 7 6 4.9331 1.0806 2.4237 8 1 5.9312 1.4996 2.2962 9 7 5.0012 -0.1955 3.1481 10 6 5.8389 -1.1743 2.4205 11 6 4.7545 -2.2088 2.7724 12 7 4.4258 -3.1165 1.6704 13 6 3.9137 -4.3356 1.9315 14 8 3.7245 -4.6809 3.0786 15 6 3.5698 -5.2669 0.7977 16 16 2.9075 -6.8129 1.4667 17 6 2.5994 -7.6874 -0.0316 18 1 2.8232 -7.2259 -0.9820 19 6 2.0689 -8.9694 0.0096 20 7 1.7965 -9.5320 1.1680 21 14 1.7429 -9.8968 -1.5789 22 1 2.1327 -9.0505 -2.7351 23 1 2.5384 -11.1507 -1.5921 24 1 0.2979 -10.2262 -1.6720 25 6 3.7935 -1.0127 2.8975 26 6 4.2627 0.8918 1.0807 27 8 4.7929 0.4124 0.1009 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 2.1106 2.7814 2.3840 34 1 2.0707 1.1088 3.0150 35 1 3.9576 1.8340 4.2309 36 1 4.3604 3.1037 3.0273 37 1 6.8008 -1.3678 2.8950 38 1 5.9243 -0.9737 1.3525 39 1 4.9339 -2.7298 3.7128 40 1 4.5768 -2.8401 0.7529 41 1 2.8223 -4.7989 0.1571 42 1 4.4669 -5.4773 0.2155 43 1 1.4255 -10.4278 1.1968 44 1 3.2795 -0.7634 1.9691 45 1 3.1215 -1.0771 3.7531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567783967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = 4.313010 kcal Electronic energy + Delta-G solvation = -27496.321652 eV Core-core repulsion = 23642.351764 eV Total energy + Delta-G solvation = -3853.969888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99622 -39.55142 -38.22578 -36.93103 -35.23222 -33.59990 -32.42238 -31.74179 -29.56910 -28.23647 -26.83912 -26.35619 -25.53861 -25.04583 -22.01285 -21.11548 -20.45567 -20.11734 -19.38132 -17.85441 -17.60231 -17.24445 -16.60665 -16.14814 -15.89627 -15.46406 -15.34339 -14.80038 -14.74122 -14.40744 -14.22450 -14.00919 -13.78003 -13.76787 -13.33452 -13.04635 -12.96550 -12.81250 -12.52093 -12.44220 -12.26426 -11.97732 -11.62381 -11.57393 -11.21413 -11.06552 -11.02089 -10.97733 -10.74163 -10.72119 -9.86250 -9.79836 -9.47794 -9.17906 -9.07474 -9.02671 -8.88406 -8.22852 -6.49364 -6.21354 -3.91637 1.76777 2.08451 2.72082 2.99600 3.03960 3.21960 3.27306 3.31897 3.46946 3.74751 3.91733 3.96355 4.20833 4.32135 4.40374 4.51312 4.57268 4.61639 4.67030 4.93175 5.02789 5.05468 5.06318 5.13941 5.15325 5.21038 5.23255 5.37780 5.42503 5.52050 5.58477 5.61143 5.62720 5.78967 5.89237 5.95818 5.99416 6.15266 6.27640 6.38845 6.50108 6.62363 6.65750 7.60668 7.68537 7.71003 8.36191 8.59413 9.24248 10.86127 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002698 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.338812 B =10375.262034 C =11380.395832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.179 4.179 3 C 0.152 3.848 4 N -0.613 5.613 5 C 0.097 3.903 6 C -0.122 4.122 7 C 0.018 3.982 8 H 0.117 0.883 9 N -0.446 5.446 10 C -0.018 4.018 11 C 0.127 3.873 12 N -0.729 5.729 13 C 0.534 3.466 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.026 4.026 26 C 0.494 3.506 27 O -0.523 6.523 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.400 0.600 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.083 0.917 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 28.590 1.366 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.031 3.969 4 N -0.347 5.347 5 C -0.026 4.026 6 C -0.160 4.160 7 C -0.095 4.095 8 H 0.135 0.865 9 N -0.169 5.169 10 C -0.147 4.147 11 C 0.020 3.980 12 N -0.382 5.382 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.156 4.156 26 C 0.280 3.720 27 O -0.398 6.398 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.144 0.856 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.606 27.814 3.456 28.149 hybrid contribution -0.296 -0.143 -3.679 3.693 sum 2.310 27.672 -0.222 27.769 Atomic orbital electron populations 1.23939 0.95646 1.02355 0.98834 1.23299 0.96337 0.98877 1.01332 1.20514 0.91620 0.95711 0.89042 1.48432 1.12253 1.62111 1.11951 1.22270 0.98001 0.99847 0.82437 1.22694 0.93002 0.98928 1.01384 1.23076 1.01286 0.94760 0.90353 0.86529 1.68792 1.06925 0.99542 1.41688 1.24653 0.98807 0.91011 1.00258 1.22758 0.93560 0.88626 0.93059 1.46051 1.66895 1.15985 1.09303 1.20366 0.75823 0.81083 0.90654 1.90697 1.51187 1.74825 1.22215 1.23541 1.04716 1.02332 0.99871 1.85375 1.80976 1.05405 1.11501 1.22911 1.49272 1.03069 0.93028 0.90900 1.24993 0.94825 0.96474 0.97311 1.70031 1.41062 1.15061 1.24138 0.86117 0.78075 0.79386 0.81931 1.19615 1.20544 1.20578 1.24827 0.94838 0.93364 1.02570 1.21646 0.82413 0.77301 0.90599 1.90729 1.68287 1.44040 1.36731 0.88452 0.87745 0.87052 0.89813 0.89145 0.90087 0.90623 0.87794 0.89386 0.88092 0.88649 0.85647 0.76551 0.89328 0.89157 0.92248 0.89911 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 14.32 29.02 0.42 -0.94 16 2 C -0.18 -1.62 9.79 -36.02 -0.35 -1.98 16 3 C 0.15 1.17 6.37 -5.19 -0.03 1.13 16 4 N -0.61 -4.95 2.23 -173.55 -0.39 -5.33 16 5 C 0.10 0.54 6.57 -2.93 -0.02 0.52 16 6 C -0.12 -0.63 6.79 -24.91 -0.17 -0.80 16 7 C 0.02 0.14 3.24 -67.72 -0.22 -0.08 16 8 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 9 N -0.45 -4.22 6.22 -230.45 -1.43 -5.65 16 10 C -0.02 -0.19 7.56 -2.76 -0.02 -0.21 16 11 C 0.13 1.60 4.43 -69.62 -0.31 1.29 16 12 N -0.73 -10.44 5.36 -54.94 -0.29 -10.73 16 13 C 0.53 10.17 7.85 -10.98 -0.09 10.09 16 14 O -0.52 -11.72 15.46 5.56 0.09 -11.64 16 15 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.03 -0.28 6.30 -2.76 -0.02 -0.30 16 26 C 0.49 5.03 4.98 -10.86 -0.05 4.98 16 27 O -0.52 -7.09 15.87 5.56 0.09 -7.00 16 28 H 0.10 0.59 7.84 -52.49 -0.41 0.18 16 29 H 0.10 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 32 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.46 7.71 -51.93 -0.40 0.06 16 35 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.94 8.14 -51.94 -0.42 0.52 16 38 H 0.10 1.08 5.87 -51.93 -0.30 0.78 16 39 H 0.13 1.78 7.46 -51.93 -0.39 1.40 16 40 H 0.40 5.08 8.73 -40.82 -0.36 4.72 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 42 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 0.94 5.17 -51.93 -0.27 0.68 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -35.49 384.96 -9.80 -45.29 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.71 Total: 4.41 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.45 Total: -2.33 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.38 Total: -47.27 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.49 -9.80 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.603 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds