Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99989 * 2 1 4 4 N 1.46500 * 109.47241 * 124.99307 * 3 2 1 5 5 C 1.46763 * 124.35160 * 270.00569 * 4 3 2 6 6 C 1.54832 * 105.49300 * 197.05872 * 5 4 3 7 7 C 1.54630 * 101.60622 * 334.56422 * 6 5 4 8 8 H 1.08998 * 110.49190 * 143.56920 * 7 6 5 9 9 N 1.46898 * 110.48693 * 266.08825 * 7 6 5 10 10 C 1.47961 * 111.00220 * 178.16193 * 9 7 6 11 11 C 1.53940 * 86.17865 * 222.41049 * 10 9 7 12 12 N 1.46499 * 113.73302 * 138.07181 * 11 10 9 13 13 C 1.34784 * 119.99893 * 155.00068 * 12 11 10 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 11 16 16 S 1.81008 * 109.46759 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99946 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99702 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47003 * 120.00084 * 21 19 17 24 24 H 1.48500 * 109.46787 * 239.99933 * 21 19 17 25 25 C 1.47956 * 111.00496 * 78.79240 * 9 7 6 26 26 C 1.34425 * 124.34570 * 90.02502 * 4 3 2 27 27 O 1.21279 * 124.93976 * 359.53878 * 26 4 3 28 28 H 1.08001 * 120.00607 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99812 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46458 * 4.99457 * 3 2 1 32 32 H 1.08999 * 109.47013 * 244.99654 * 3 2 1 33 33 H 1.09000 * 110.24242 * 316.03021 * 5 4 3 34 34 H 1.08998 * 110.24880 * 77.94664 * 5 4 3 35 35 H 1.08996 * 111.08099 * 216.48660 * 6 5 4 36 36 H 1.09000 * 111.01177 * 92.61175 * 6 5 4 37 37 H 1.08989 * 113.76746 * 108.09585 * 10 9 7 38 38 H 1.09007 * 113.85687 * 336.73513 * 10 9 7 39 39 H 1.08994 * 113.73620 * 269.25094 * 11 10 9 40 40 H 0.97005 * 120.00261 * 335.00280 * 12 11 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 42 42 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 43 43 H 0.97000 * 119.99806 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.75781 * 23.27068 * 25 9 7 45 45 H 1.08992 * 113.76166 * 251.89915 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6598 1.8434 2.4660 6 6 4.0183 2.0788 3.1706 7 6 4.9331 1.0806 2.4237 8 1 5.9312 1.4996 2.2962 9 7 5.0012 -0.1955 3.1481 10 6 5.8389 -1.1743 2.4205 11 6 4.7545 -2.2088 2.7724 12 7 4.4258 -3.1165 1.6704 13 6 3.9137 -4.3356 1.9315 14 8 3.7245 -4.6809 3.0786 15 6 3.5698 -5.2669 0.7977 16 16 2.9075 -6.8129 1.4667 17 6 2.5994 -7.6874 -0.0316 18 1 2.8232 -7.2259 -0.9820 19 6 2.0689 -8.9694 0.0096 20 7 1.7965 -9.5320 1.1680 21 14 1.7429 -9.8968 -1.5789 22 1 2.1327 -9.0505 -2.7351 23 1 2.5384 -11.1507 -1.5921 24 1 0.2979 -10.2262 -1.6720 25 6 3.7935 -1.0127 2.8975 26 6 4.2627 0.8918 1.0807 27 8 4.7929 0.4124 0.1009 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 2.1106 2.7814 2.3840 34 1 2.0707 1.1088 3.0150 35 1 3.9576 1.8340 4.2309 36 1 4.3604 3.1037 3.0273 37 1 6.8008 -1.3678 2.8950 38 1 5.9243 -0.9737 1.3525 39 1 4.9339 -2.7298 3.7128 40 1 4.5768 -2.8401 0.7529 41 1 2.8223 -4.7989 0.1571 42 1 4.4669 -5.4773 0.2155 43 1 1.4255 -10.4278 1.1968 44 1 3.2795 -0.7634 1.9691 45 1 3.1215 -1.0771 3.7531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567783967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -22.738038 kcal Electronic energy + Delta-G solvation = -27497.494674 eV Core-core repulsion = 23642.351764 eV Total energy + Delta-G solvation = -3855.142910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76865 -40.76793 -39.37441 -37.67861 -35.97701 -34.81372 -34.60371 -32.51805 -30.96023 -29.10881 -27.71085 -27.52558 -27.19764 -25.89929 -22.65184 -22.06604 -21.75125 -20.93731 -20.13598 -19.80287 -18.51847 -18.02898 -17.89405 -17.07716 -16.90670 -16.87368 -16.52695 -16.32830 -15.94833 -15.84366 -15.13142 -14.96485 -14.69658 -14.62732 -14.47039 -14.37306 -13.96609 -13.81989 -13.74330 -13.34282 -13.18961 -13.07919 -12.93653 -12.77141 -12.63961 -12.45184 -12.25015 -11.98219 -11.82589 -11.67618 -11.53539 -11.18011 -11.04024 -10.52628 -10.32112 -10.20908 -9.84187 -9.81803 -8.69534 -8.37251 -6.15447 1.10544 1.22040 1.33721 1.39433 1.44113 1.49821 1.55935 2.10381 2.14858 2.24641 2.70444 2.96804 3.25408 3.28257 3.31708 3.50772 3.64452 3.83840 3.88987 3.96530 4.01245 4.06731 4.09972 4.22358 4.29759 4.41648 4.43887 4.47302 4.56216 4.63874 4.66924 4.72036 4.83185 4.95075 4.95856 5.08801 5.11942 5.36516 5.37892 5.39624 5.59617 5.70327 5.75450 6.00987 6.17610 6.35348 6.98420 7.04107 7.12151 8.72245 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002698 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.338812 B =10375.262034 C =11380.395832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.195 4.195 3 C 0.154 3.846 4 N -0.609 5.609 5 C 0.092 3.908 6 C -0.111 4.111 7 C 0.015 3.985 8 H 0.126 0.874 9 N -0.437 5.437 10 C -0.007 4.007 11 C 0.113 3.887 12 N -0.706 5.706 13 C 0.539 3.461 14 O -0.557 6.557 15 C -0.132 4.132 16 S -0.142 6.142 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.016 4.016 26 C 0.485 3.515 27 O -0.566 6.566 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.410 0.590 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.272 0.728 44 H 0.079 0.921 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 31.203 0.439 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.214 4.214 3 C 0.033 3.967 4 N -0.342 5.342 5 C -0.030 4.030 6 C -0.149 4.149 7 C -0.098 4.098 8 H 0.143 0.857 9 N -0.160 5.160 10 C -0.136 4.136 11 C 0.007 3.993 12 N -0.359 5.359 13 C 0.325 3.675 14 O -0.435 6.435 15 C -0.283 4.283 16 S 0.085 5.915 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.820 3.180 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.146 4.146 26 C 0.272 3.728 27 O -0.444 6.444 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.247 0.753 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.344 30.496 2.536 30.691 hybrid contribution -0.214 -0.826 -3.370 3.476 sum 2.130 29.670 -0.834 29.758 Atomic orbital electron populations 1.24078 0.95223 1.03209 0.97139 1.23210 0.96760 0.98461 1.03003 1.20564 0.91765 0.95886 0.88527 1.48568 1.11626 1.61000 1.12999 1.22502 0.98551 1.00968 0.80945 1.22750 0.91718 0.99228 1.01209 1.23215 1.02457 0.94471 0.89616 0.85669 1.68823 1.05657 0.99945 1.41592 1.24571 0.98820 0.90046 1.00134 1.22987 0.95877 0.88701 0.91764 1.45838 1.64974 1.14521 1.10568 1.20061 0.75963 0.82062 0.89390 1.90685 1.53438 1.75919 1.23463 1.23381 1.05366 0.99128 1.00420 1.85502 1.82115 1.10057 1.13784 1.23223 1.49570 1.03706 0.93092 0.90205 1.26117 0.94180 0.97409 1.01327 1.70182 1.41911 1.15651 1.26851 0.84907 0.78184 0.77800 0.77063 1.18285 1.19778 1.19732 1.24693 0.95014 0.92467 1.02434 1.22027 0.83165 0.76851 0.90747 1.90699 1.69369 1.46051 1.38305 0.85685 0.88764 0.90136 0.86597 0.90468 0.87152 0.91064 0.87095 0.86978 0.86708 0.89285 0.87230 0.75333 0.87745 0.87481 0.91901 0.90317 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 14.32 67.78 0.97 -1.35 16 2 C -0.20 -3.43 9.79 25.65 0.25 -3.18 16 3 C 0.15 2.11 6.37 85.63 0.55 2.66 16 4 N -0.61 -8.72 2.23 -821.59 -1.83 -10.55 16 5 C 0.09 0.75 6.57 86.95 0.57 1.32 16 6 C -0.11 -0.78 6.79 31.77 0.22 -0.57 16 7 C 0.01 0.21 3.24 44.91 0.15 0.35 16 8 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 9 N -0.44 -7.63 6.22 -883.02 -5.49 -13.12 16 10 C -0.01 -0.13 7.56 86.41 0.65 0.52 16 11 C 0.11 2.83 4.43 46.56 0.21 3.04 16 12 N -0.71 -20.30 5.36 -446.11 -2.39 -22.70 16 13 C 0.54 20.91 7.85 87.65 0.69 21.59 16 14 O -0.56 -26.25 15.46 -3.04 -0.05 -26.30 16 15 C -0.13 -5.50 6.16 71.24 0.44 -5.06 16 16 S -0.14 -8.01 20.57 -56.49 -1.16 -9.18 16 17 C -0.55 -31.91 9.50 67.95 0.65 -31.27 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.84 5.49 84.86 0.47 1.31 16 20 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 21 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C -0.02 -0.34 6.30 86.41 0.54 0.20 16 26 C 0.49 9.34 4.98 87.90 0.44 9.78 16 27 O -0.57 -15.31 15.87 -3.03 -0.05 -15.36 16 28 H 0.13 1.12 7.84 -2.91 -0.02 1.10 16 29 H 0.09 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.08 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.12 0.84 7.79 -2.39 -0.02 0.82 16 32 H 0.08 1.28 7.93 -2.39 -0.02 1.26 16 33 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.68 7.71 -2.39 -0.02 0.66 16 35 H 0.11 0.70 8.08 -2.39 -0.02 0.69 16 36 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 1.97 5.87 -2.38 -0.01 1.95 16 39 H 0.11 3.18 7.46 -2.39 -0.02 3.16 16 40 H 0.41 10.32 8.73 -92.70 -0.81 9.51 16 41 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 42 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.08 1.76 5.17 -2.39 -0.01 1.75 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -80.18 384.96 -1.69 -81.86 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.19 Total: 25.70 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.78 Total: -0.67 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -9.43 Total: -102.33 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.10 Total: -41.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -80.18 -1.69 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.127 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds