Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47442 * 2 1 4 4 N 1.46507 * 109.46841 * 119.99775 * 2 1 3 5 5 C 1.46496 * 120.00056 * 300.53692 * 4 2 1 6 6 C 1.53000 * 109.47106 * 262.52840 * 5 4 2 7 7 N 1.46505 * 109.47010 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00162 * 270.00138 * 7 6 5 9 9 C 1.36937 * 119.99751 * 89.99850 * 7 6 5 10 10 H 1.07998 * 120.00251 * 318.53379 * 9 7 6 11 11 C 1.38820 * 119.99959 * 138.53284 * 9 7 6 12 12 N 1.31618 * 119.99902 * 344.24717 * 11 9 7 13 13 Si 1.86796 * 119.99869 * 164.24521 * 11 9 7 14 14 H 1.48502 * 109.46978 * 90.00273 * 13 11 9 15 15 H 1.48507 * 109.46921 * 209.99957 * 13 11 9 16 16 H 1.48495 * 109.47500 * 330.00225 * 13 11 9 17 17 C 1.34775 * 119.99830 * 120.54446 * 4 2 1 18 18 O 1.21624 * 120.00226 * 2.73421 * 17 4 2 19 19 C 1.47166 * 119.99949 * 182.73908 * 17 4 2 20 20 C 1.36617 * 125.16314 * 172.89900 * 19 17 4 21 21 C 1.36799 * 114.74851 * 179.97438 * 20 19 17 22 22 C 1.36616 * 114.74322 * 0.02562 * 21 20 19 23 23 C 1.47159 * 125.16263 * 179.97438 * 22 21 20 24 24 N 1.34782 * 120.00514 * 180.02562 * 23 22 21 25 25 O 1.21625 * 120.00026 * 0.02562 * 23 22 21 26 26 S 1.75834 * 125.16407 * 352.85338 * 19 17 4 27 27 H 1.09005 * 109.47224 * 300.00404 * 1 2 3 28 28 H 1.09001 * 109.46882 * 60.00094 * 1 2 3 29 29 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47120 * 239.99530 * 2 1 3 31 31 H 1.08995 * 109.47353 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46526 * 300.00020 * 3 2 1 33 33 H 1.08995 * 109.47347 * 59.99669 * 3 2 1 34 34 H 1.09001 * 109.47332 * 22.52703 * 5 4 2 35 35 H 1.08997 * 109.47267 * 142.52689 * 5 4 2 36 36 H 1.08996 * 109.47066 * 299.99684 * 6 5 4 37 37 H 1.08994 * 109.47290 * 60.00312 * 6 5 4 38 38 H 1.08990 * 109.46874 * 92.98232 * 8 7 6 39 39 H 1.08997 * 109.46925 * 212.98511 * 8 7 6 40 40 H 1.09003 * 109.46797 * 332.97891 * 8 7 6 41 41 H 0.96996 * 120.00414 * 179.97438 * 12 11 9 42 42 H 1.08004 * 122.62353 * 0.23467 * 20 19 17 43 43 H 1.07998 * 122.62950 * 180.02562 * 21 20 19 44 44 H 0.97000 * 119.99013 * 359.97438 * 24 23 22 45 45 H 0.96998 * 120.00323 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6547 -0.1970 2.5268 6 6 2.7886 0.6709 3.0762 7 7 2.4247 1.1651 4.4065 8 6 1.7125 2.4378 4.5457 9 6 2.7501 0.4373 5.5199 10 1 2.6344 -0.6365 5.5160 11 6 3.2288 1.0797 6.6536 12 7 3.6626 2.3198 6.5735 13 14 3.2572 0.1842 8.2926 14 1 4.5541 -0.5222 8.4483 15 1 3.0921 1.1650 9.3955 16 1 2.1480 -0.8021 8.3372 17 6 2.8021 -1.7800 1.0727 18 8 3.1450 -2.1605 -0.0304 19 6 3.2431 -2.5091 2.2725 20 6 3.9191 -3.6963 2.2676 21 6 4.2253 -4.1861 3.5077 22 6 3.8047 -3.4087 4.5494 23 6 4.0105 -3.7165 5.9736 24 7 3.5498 -2.8733 6.9189 25 8 4.5963 -4.7319 6.2979 26 16 2.9809 -1.9841 3.9300 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 0.7434 0.3971 2.4574 35 1 1.4875 -1.0419 3.1947 36 1 3.6998 0.0769 3.1456 37 1 2.9557 1.5160 2.4084 38 1 0.6389 2.2523 4.5719 39 1 2.0195 2.9267 5.4702 40 1 1.9496 3.0813 3.6984 41 1 3.9967 2.7688 7.3657 42 1 4.1942 -4.2060 1.3560 43 1 4.7577 -5.1146 3.6519 44 1 3.0830 -2.0634 6.6602 45 1 3.6858 -3.0761 7.8576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571615349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -6.775347 kcal Electronic energy + Delta-G solvation = -28988.752580 eV Core-core repulsion = 25134.301865 eV Total energy + Delta-G solvation = -3854.450716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03538 -39.21719 -37.29464 -36.28640 -35.52930 -33.54926 -32.89744 -31.53170 -29.38902 -28.44848 -27.23976 -26.22992 -25.55366 -23.93647 -22.27823 -21.37800 -20.97702 -19.63763 -18.90212 -18.01743 -17.38499 -16.86346 -16.63589 -15.89374 -15.34833 -15.13212 -15.00835 -14.56034 -14.47632 -14.14491 -14.01428 -13.73556 -13.40040 -13.19437 -12.99900 -12.88260 -12.85461 -12.40114 -12.14634 -12.05021 -11.80755 -11.72280 -11.43114 -11.23221 -11.18277 -11.11084 -10.80197 -10.57405 -10.49778 -10.31745 -10.17642 -9.70255 -9.54965 -9.50257 -8.93455 -8.71286 -8.44972 -7.99508 -6.83081 -6.09878 -3.83581 0.41473 1.82698 2.12087 2.31409 3.00573 3.03883 3.06252 3.15347 3.28217 3.51084 3.72315 4.09134 4.57566 4.96775 4.99560 5.06105 5.10911 5.13420 5.26703 5.40457 5.49033 5.57519 5.59938 5.62494 5.69029 5.75473 5.86751 5.91969 6.11438 6.14642 6.20494 6.28316 6.34248 6.52782 6.55461 6.58290 6.73016 6.84174 6.90015 7.25043 7.42503 7.45650 7.52621 8.15268 8.25317 8.37543 8.81339 9.40150 10.02256 10.84254 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.006425 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.714003 B = 4356.905018 C = 6815.125743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.599 5.599 5 C 0.070 3.930 6 C 0.117 3.883 7 N -0.582 5.582 8 C 0.122 3.878 9 C -0.265 4.265 10 H 0.053 0.947 11 C 0.029 3.971 12 N -0.869 5.869 13 Si 0.868 3.132 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.269 1.269 17 C 0.591 3.409 18 O -0.541 6.541 19 C -0.280 4.280 20 C -0.079 4.079 21 C -0.080 4.080 22 C -0.301 4.301 23 C 0.597 3.403 24 N -0.850 5.850 25 O -0.544 6.544 26 S 0.339 5.661 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.052 0.948 38 H -0.006 1.006 39 H 0.084 0.916 40 H 0.017 0.983 41 H 0.262 0.738 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.405 0.595 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -2.620 -7.126 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 C -0.221 4.221 4 N -0.331 5.331 5 C -0.057 4.057 6 C -0.011 4.011 7 N -0.304 5.304 8 C -0.023 4.023 9 C -0.396 4.396 10 H 0.070 0.930 11 C -0.175 4.175 12 N -0.509 5.509 13 Si 0.696 3.304 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.380 3.620 18 O -0.420 6.420 19 C -0.402 4.402 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.421 4.421 23 C 0.382 3.618 24 N -0.416 5.416 25 O -0.423 6.423 26 S 0.614 5.386 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.012 0.988 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.237 0.763 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.949 -2.072 -6.842 9.300 hybrid contribution 0.564 -1.183 0.721 1.496 sum -5.385 -3.255 -6.121 8.778 Atomic orbital electron populations 1.22161 0.94949 1.02352 1.02505 1.21057 0.93971 0.93347 0.88483 1.22223 1.01976 0.95386 1.02491 1.47945 1.49794 1.27828 1.07566 1.22961 1.02488 0.98978 0.81320 1.21617 0.94183 0.96536 0.88811 1.43549 1.64535 1.22564 0.99745 1.21170 0.92050 0.87115 1.01965 1.18500 1.40725 0.88879 0.91519 0.93038 1.25272 0.96410 0.96601 0.99191 1.69860 1.40190 1.11889 1.28958 0.86907 0.78830 0.80138 0.84573 1.19727 1.20595 1.19386 1.17181 0.77835 0.79646 0.87364 1.90739 1.57017 1.67771 1.26508 1.25459 1.12174 1.02335 1.00188 1.20311 0.98125 0.94287 0.98577 1.20317 1.00309 1.00639 0.90008 1.25854 1.12794 1.06169 0.97315 1.17169 0.77621 0.82636 0.84369 1.44135 1.61160 1.26546 1.09764 1.90784 1.42350 1.26550 1.82610 1.87095 1.47113 1.11500 0.92895 0.91949 0.91400 0.92358 0.88184 0.92058 0.91655 0.91589 0.88902 0.90786 0.92383 0.92960 0.98770 0.89770 0.96400 0.92771 0.83585 0.83754 0.76265 0.76434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.18 37.16 0.34 -1.32 16 2 C 0.13 1.68 3.24 -67.93 -0.22 1.46 16 3 C -0.16 -1.85 8.32 37.16 0.31 -1.54 16 4 N -0.60 -8.88 2.39 -167.46 -0.40 -9.28 16 5 C 0.07 1.07 4.46 -4.04 -0.02 1.05 16 6 C 0.12 2.10 5.03 -4.04 -0.02 2.08 16 7 N -0.58 -12.05 2.80 -181.12 -0.51 -12.56 16 8 C 0.12 2.46 10.38 59.85 0.62 3.08 16 9 C -0.26 -5.86 8.65 -15.06 -0.13 -5.99 16 10 H 0.05 1.08 2.70 -30.71 -0.08 0.99 16 11 C 0.03 0.68 5.09 -17.43 -0.09 0.59 16 12 N -0.87 -21.91 11.36 55.49 0.63 -21.28 16 13 Si 0.87 17.77 26.91 -169.99 -4.57 13.20 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.05 7.05 56.52 0.40 -4.65 16 17 C 0.59 10.05 7.59 -12.64 -0.10 9.95 16 18 O -0.54 -10.24 16.16 5.26 0.08 -10.15 16 19 C -0.28 -4.67 6.13 -36.54 -0.22 -4.90 16 20 C -0.08 -1.24 9.89 -40.69 -0.40 -1.64 16 21 C -0.08 -1.27 9.88 -40.69 -0.40 -1.67 16 22 C -0.30 -5.22 6.46 -36.55 -0.24 -5.46 16 23 C 0.60 10.95 8.07 -12.64 -0.10 10.85 16 24 N -0.85 -14.39 8.16 30.37 0.25 -14.15 16 25 O -0.54 -11.10 17.65 5.26 0.09 -11.01 16 26 S 0.34 5.74 10.96 -107.50 -1.18 4.56 16 27 H 0.06 0.64 6.65 -51.93 -0.35 0.29 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.35 6.90 -51.93 -0.36 0.99 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.78 6.72 -51.93 -0.35 0.43 16 34 H 0.09 1.31 6.42 -51.93 -0.33 0.97 16 35 H 0.08 1.19 4.34 -21.34 -0.09 1.10 16 36 H 0.06 1.13 6.02 -47.45 -0.29 0.85 16 37 H 0.05 0.91 6.00 -51.93 -0.31 0.60 16 38 H -0.01 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.08 1.94 5.56 -51.93 -0.29 1.65 16 40 H 0.02 0.32 7.86 -51.93 -0.41 -0.08 16 41 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 42 H 0.15 2.07 8.05 -52.48 -0.42 1.65 16 43 H 0.14 2.11 8.04 -52.49 -0.42 1.68 16 44 H 0.40 7.07 4.03 -40.82 -0.16 6.91 16 45 H 0.40 6.10 8.93 -40.82 -0.36 5.74 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -27.53 357.27 -6.37 -33.90 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.48 Total: 14.84 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.67 Total: 6.54 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.03 Total: -57.26 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.16 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.57 Total: 13.20 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.18 Total: 4.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.53 -6.37 -33.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.124 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds