Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47442 * 2 1 4 4 N 1.46507 * 109.46841 * 119.99775 * 2 1 3 5 5 C 1.46496 * 120.00056 * 300.53692 * 4 2 1 6 6 C 1.53000 * 109.47106 * 262.52840 * 5 4 2 7 7 N 1.46505 * 109.47010 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00162 * 270.00138 * 7 6 5 9 9 C 1.36937 * 119.99751 * 89.99850 * 7 6 5 10 10 H 1.07998 * 120.00251 * 318.53379 * 9 7 6 11 11 C 1.38820 * 119.99959 * 138.53284 * 9 7 6 12 12 N 1.31618 * 119.99902 * 344.24717 * 11 9 7 13 13 Si 1.86796 * 119.99869 * 164.24521 * 11 9 7 14 14 H 1.48502 * 109.46978 * 90.00273 * 13 11 9 15 15 H 1.48507 * 109.46921 * 209.99957 * 13 11 9 16 16 H 1.48495 * 109.47500 * 330.00225 * 13 11 9 17 17 C 1.34775 * 119.99830 * 120.54446 * 4 2 1 18 18 O 1.21624 * 120.00226 * 2.73421 * 17 4 2 19 19 C 1.47166 * 119.99949 * 182.73908 * 17 4 2 20 20 C 1.36617 * 125.16314 * 172.89900 * 19 17 4 21 21 C 1.36799 * 114.74851 * 179.97438 * 20 19 17 22 22 C 1.36616 * 114.74322 * 0.02562 * 21 20 19 23 23 C 1.47159 * 125.16263 * 179.97438 * 22 21 20 24 24 N 1.34782 * 120.00514 * 180.02562 * 23 22 21 25 25 O 1.21625 * 120.00026 * 0.02562 * 23 22 21 26 26 S 1.75834 * 125.16407 * 352.85338 * 19 17 4 27 27 H 1.09005 * 109.47224 * 300.00404 * 1 2 3 28 28 H 1.09001 * 109.46882 * 60.00094 * 1 2 3 29 29 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47120 * 239.99530 * 2 1 3 31 31 H 1.08995 * 109.47353 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46526 * 300.00020 * 3 2 1 33 33 H 1.08995 * 109.47347 * 59.99669 * 3 2 1 34 34 H 1.09001 * 109.47332 * 22.52703 * 5 4 2 35 35 H 1.08997 * 109.47267 * 142.52689 * 5 4 2 36 36 H 1.08996 * 109.47066 * 299.99684 * 6 5 4 37 37 H 1.08994 * 109.47290 * 60.00312 * 6 5 4 38 38 H 1.08990 * 109.46874 * 92.98232 * 8 7 6 39 39 H 1.08997 * 109.46925 * 212.98511 * 8 7 6 40 40 H 1.09003 * 109.46797 * 332.97891 * 8 7 6 41 41 H 0.96996 * 120.00414 * 179.97438 * 12 11 9 42 42 H 1.08004 * 122.62353 * 0.23467 * 20 19 17 43 43 H 1.07998 * 122.62950 * 180.02562 * 21 20 19 44 44 H 0.97000 * 119.99013 * 359.97438 * 24 23 22 45 45 H 0.96998 * 120.00323 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6547 -0.1970 2.5268 6 6 2.7886 0.6709 3.0762 7 7 2.4247 1.1651 4.4065 8 6 1.7125 2.4378 4.5457 9 6 2.7501 0.4373 5.5199 10 1 2.6344 -0.6365 5.5160 11 6 3.2288 1.0797 6.6536 12 7 3.6626 2.3198 6.5735 13 14 3.2572 0.1842 8.2926 14 1 4.5541 -0.5222 8.4483 15 1 3.0921 1.1650 9.3955 16 1 2.1480 -0.8021 8.3372 17 6 2.8021 -1.7800 1.0727 18 8 3.1450 -2.1605 -0.0304 19 6 3.2431 -2.5091 2.2725 20 6 3.9191 -3.6963 2.2676 21 6 4.2253 -4.1861 3.5077 22 6 3.8047 -3.4087 4.5494 23 6 4.0105 -3.7165 5.9736 24 7 3.5498 -2.8733 6.9189 25 8 4.5963 -4.7319 6.2979 26 16 2.9809 -1.9841 3.9300 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 0.7434 0.3971 2.4574 35 1 1.4875 -1.0419 3.1947 36 1 3.6998 0.0769 3.1456 37 1 2.9557 1.5160 2.4084 38 1 0.6389 2.2523 4.5719 39 1 2.0195 2.9267 5.4702 40 1 1.9496 3.0813 3.6984 41 1 3.9967 2.7688 7.3657 42 1 4.1942 -4.2060 1.3560 43 1 4.7577 -5.1146 3.6519 44 1 3.0830 -2.0634 6.6602 45 1 3.6858 -3.0761 7.8576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571615349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -24.479533 kcal Electronic energy + Delta-G solvation = -28989.520291 eV Core-core repulsion = 25134.301865 eV Total energy + Delta-G solvation = -3855.218427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30715 -40.64949 -38.63344 -37.67621 -36.94553 -34.97319 -34.18710 -33.07944 -30.68586 -29.87172 -28.11882 -27.89748 -26.86513 -25.40883 -23.49871 -22.71494 -22.53382 -20.77912 -20.28551 -19.34065 -18.89441 -18.31691 -18.01466 -17.21165 -16.78024 -16.46563 -16.43929 -15.99951 -15.76878 -15.65685 -15.30598 -15.00129 -14.81610 -14.51790 -14.25799 -14.16325 -14.11403 -13.64917 -13.28350 -13.19463 -13.13404 -12.97498 -12.93027 -12.76869 -12.63082 -12.21611 -12.16913 -12.09253 -11.82748 -11.70603 -11.63976 -11.06328 -10.99014 -10.94004 -10.59971 -10.05854 -9.74582 -9.32530 -8.52163 -7.81939 -5.58821 -0.92205 0.48295 0.79055 0.99332 1.39252 1.43156 1.50588 1.81176 1.90908 2.16404 2.34939 2.43863 3.24241 3.30583 3.71322 3.77300 3.92976 4.01563 4.12391 4.20921 4.34215 4.37100 4.37739 4.49543 4.63397 4.75567 4.79517 4.89789 4.95906 4.98233 5.00438 5.03987 5.12218 5.26690 5.28422 5.35339 5.37773 5.53948 5.56249 5.59680 5.78314 6.06267 6.18132 6.43179 6.95132 6.97908 7.11147 7.75031 8.32410 9.08613 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.006425 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.714003 B = 4356.905018 C = 6815.125743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.082 3.918 6 C 0.122 3.878 7 N -0.595 5.595 8 C 0.126 3.874 9 C -0.257 4.257 10 H 0.069 0.931 11 C -0.020 4.020 12 N -0.906 5.906 13 Si 0.905 3.095 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.241 1.241 17 C 0.587 3.413 18 O -0.564 6.564 19 C -0.284 4.284 20 C -0.074 4.074 21 C -0.070 4.070 22 C -0.317 4.317 23 C 0.597 3.403 24 N -0.843 5.843 25 O -0.568 6.568 26 S 0.329 5.671 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.011 0.989 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.254 0.746 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.403 0.597 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -3.268 -8.263 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.323 5.323 5 C -0.045 4.045 6 C -0.006 4.006 7 N -0.318 5.318 8 C -0.019 4.019 9 C -0.389 4.389 10 H 0.085 0.915 11 C -0.220 4.220 12 N -0.549 5.549 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.222 1.222 16 H -0.165 1.165 17 C 0.375 3.625 18 O -0.445 6.445 19 C -0.405 4.405 20 C -0.108 4.108 21 C -0.104 4.104 22 C -0.438 4.438 23 C 0.383 3.617 24 N -0.410 5.410 25 O -0.449 6.449 26 S 0.604 5.396 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.181 0.819 43 H 0.177 0.823 44 H 0.235 0.765 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.254 -2.717 -7.981 11.122 hybrid contribution 0.962 -0.990 0.939 1.669 sum -6.291 -3.708 -7.042 10.145 Atomic orbital electron populations 1.22121 0.92812 1.02476 1.03866 1.21302 0.95620 0.93483 0.86988 1.22184 1.00927 0.94768 1.03653 1.48017 1.48928 1.27159 1.08190 1.22713 1.01908 0.98564 0.81341 1.21587 0.94467 0.96779 0.87762 1.43740 1.64884 1.22702 1.00435 1.21077 0.92836 0.86981 1.01047 1.18931 1.38454 0.89905 0.91644 0.91504 1.25870 0.97091 0.97165 1.01829 1.69999 1.42505 1.13367 1.29000 0.86290 0.79661 0.79597 0.81325 1.19733 1.22213 1.16499 1.17287 0.77994 0.80147 0.87042 1.90728 1.58054 1.68589 1.27155 1.25531 1.12502 1.02770 0.99722 1.20509 0.97263 0.93876 0.99113 1.20520 0.99381 1.00779 0.89672 1.25894 1.13829 1.06832 0.97204 1.17293 0.77219 0.82351 0.84858 1.44085 1.60564 1.26067 1.10235 1.90769 1.43613 1.27542 1.83024 1.86951 1.47511 1.11812 0.93358 0.91593 0.89026 0.92853 0.89112 0.93662 0.89048 0.91848 0.87003 0.91017 0.94126 0.92453 0.97075 0.92678 0.95152 0.93670 0.81932 0.82321 0.76454 0.75429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.18 71.98 0.66 -2.05 16 2 C 0.13 2.91 3.24 44.99 0.15 3.05 16 3 C -0.16 -3.22 8.32 71.98 0.60 -2.62 16 4 N -0.59 -16.49 2.39 -801.99 -1.91 -18.41 16 5 C 0.08 2.34 4.46 86.38 0.39 2.73 16 6 C 0.12 4.23 5.03 86.38 0.43 4.66 16 7 N -0.59 -24.08 2.80 -726.94 -2.04 -26.12 16 8 C 0.13 4.94 10.38 127.77 1.33 6.27 16 9 C -0.26 -11.21 8.65 84.04 0.73 -10.48 16 10 H 0.07 2.69 2.70 -16.76 -0.05 2.64 16 11 C -0.02 -0.93 5.09 84.86 0.43 -0.50 16 12 N -0.91 -46.61 11.36 21.65 0.25 -46.36 16 13 Si 0.90 36.06 26.91 68.60 1.85 37.91 16 14 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 15 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.24 -8.40 7.05 99.48 0.70 -7.70 16 17 C 0.59 19.14 7.59 86.59 0.66 19.80 16 18 O -0.56 -20.67 16.16 -4.11 -0.07 -20.73 16 19 C -0.28 -9.07 6.13 24.24 0.15 -8.92 16 20 C -0.07 -2.18 9.89 21.55 0.21 -1.97 16 21 C -0.07 -2.11 9.88 21.55 0.21 -1.90 16 22 C -0.32 -10.60 6.46 24.23 0.16 -10.44 16 23 C 0.60 21.19 8.07 86.58 0.70 21.89 16 24 N -0.84 -27.35 8.16 -176.07 -1.44 -28.79 16 25 O -0.57 -22.60 17.65 -4.11 -0.07 -22.67 16 26 S 0.33 10.72 10.96 -56.49 -0.62 10.10 16 27 H 0.07 1.12 6.65 -2.38 -0.02 1.10 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 2.29 6.90 -2.39 -0.02 2.27 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.34 6.72 -2.39 -0.02 1.32 16 34 H 0.11 2.82 6.42 -2.39 -0.02 2.81 16 35 H 0.07 2.17 4.34 -21.84 -0.09 2.08 16 36 H 0.04 1.56 6.02 -5.24 -0.03 1.53 16 37 H 0.06 1.92 6.00 -2.39 -0.01 1.91 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.05 2.55 5.56 -2.39 -0.01 2.54 16 40 H 0.03 1.08 7.86 -2.39 -0.02 1.06 16 41 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 42 H 0.16 4.26 8.05 -2.91 -0.02 4.23 16 43 H 0.16 4.31 8.04 -2.91 -0.02 4.29 16 44 H 0.40 13.46 4.03 -92.71 -0.37 13.09 16 45 H 0.41 11.79 8.93 -92.71 -0.83 10.97 16 Total: -1.00 -58.61 357.27 2.46 -56.15 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.28 Total: 39.40 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 6.80 Total: 19.52 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.14 Total: -119.68 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.14 Total: -43.40 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 1.85 Total: 37.91 kcal Atomic # 16 Polarization: 10.72 SS G_CDS: -0.62 Total: 10.10 kcal Total: -58.61 2.46 -56.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.670 kcal (2) G-P(sol) polarization free energy of solvation -58.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds