Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47048 * 240.00479 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99715 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99898 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47271 * 90.00201 * 8 6 4 10 10 H 1.48505 * 109.46880 * 209.99681 * 8 6 4 11 11 H 1.48495 * 109.47179 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 13 13 N 1.46507 * 109.46773 * 299.99896 * 12 2 1 14 14 C 1.34774 * 119.99765 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99889 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.40105 * 119.99775 * 0.27790 * 16 14 13 18 18 C 1.39151 * 119.99621 * 179.72234 * 17 16 14 19 19 C 1.39162 * 119.93368 * 359.72648 * 18 17 16 20 20 C 1.37628 * 120.10058 * 179.72245 * 19 18 17 21 21 C 1.39830 * 119.96176 * 0.55415 * 20 19 18 22 22 C 1.47388 * 120.06495 * 179.74647 * 21 20 19 23 23 O 1.21519 * 119.99877 * 179.97438 * 22 21 20 24 24 O 1.34757 * 120.00272 * 359.97385 * 22 21 20 25 25 C 1.39865 * 119.86880 * 359.71908 * 21 20 19 26 26 C 1.37765 * 119.89409 * 0.02562 * 25 21 20 27 27 F 1.35102 * 119.98124 * 179.97438 * 26 25 21 28 28 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 33 33 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 34 34 H 0.97000 * 119.99706 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47266 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 12 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 13 12 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 16 14 13 39 39 H 0.97000 * 119.99844 * 359.72383 * 17 16 14 40 40 H 1.07998 * 119.94761 * 359.97408 * 19 18 17 41 41 H 1.08006 * 120.01862 * 180.25234 * 20 19 18 42 42 H 0.96699 * 117.00459 * 180.02562 * 24 22 21 43 43 H 1.07996 * 120.05530 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7580 -3.7124 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7700 17 7 0.6187 1.2803 4.6415 18 6 0.1506 1.9331 5.7777 19 6 0.4826 1.4527 7.0409 20 6 0.0262 2.0990 8.1670 21 6 -0.7818 3.2333 8.0420 22 6 -1.2764 3.9239 9.2465 23 8 -1.9782 4.9099 9.1365 24 8 -0.9505 3.4621 10.4698 25 6 -1.1193 3.7116 6.7718 26 6 -0.6550 3.0633 5.6483 27 9 -0.9804 3.5235 4.4205 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7080 1.1610 -3.4843 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 1.1027 0.5738 7.1376 41 1 0.2881 1.7274 9.1468 42 1 -1.2988 3.9480 11.2298 43 1 -1.7429 4.5876 6.6717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = -96.368559 kcal Electronic energy + Delta-G solvation = -28840.218664 eV Core-core repulsion = 24415.669719 eV Total energy + Delta-G solvation = -4424.548945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.13953 -40.78145 -40.24875 -39.06711 -36.79791 -36.46578 -36.26842 -33.45180 -32.37182 -31.19326 -30.77845 -29.02142 -25.82510 -25.80467 -25.03116 -24.55964 -23.44266 -21.76265 -20.94806 -19.45793 -18.98684 -18.65618 -18.51336 -17.70119 -16.77485 -16.20558 -16.19321 -15.92927 -15.88344 -15.79365 -15.46423 -14.92038 -14.80540 -14.30695 -14.21619 -13.83894 -13.69347 -13.41943 -13.00216 -12.98903 -12.81800 -12.29781 -12.13128 -11.85612 -11.77970 -11.49018 -11.29022 -10.99082 -10.94094 -10.75373 -10.48843 -10.39846 -10.19267 -9.81848 -9.74341 -9.44251 -9.39306 -8.88739 -8.67885 -8.43236 -7.69787 -6.08449 -4.18914 0.28804 0.74376 1.57070 2.12299 2.62755 3.15608 3.16872 3.24756 3.28174 3.32208 3.36343 3.73067 4.18719 4.33473 4.43977 4.61205 4.70062 4.80789 5.13454 5.18599 5.44243 5.53307 5.64597 5.77289 5.89415 6.08444 6.11446 6.21256 6.27848 6.37514 6.61008 6.70441 6.70758 6.82642 6.91903 6.97246 7.11702 7.26386 7.46454 7.54563 7.63144 7.92146 8.01030 8.14040 8.30517 8.55444 8.81560 9.47364 10.93081 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002198 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.418999 B =12735.550490 C =13709.899063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.727 5.727 14 C 0.707 3.293 15 O -0.574 6.574 16 N -0.540 5.540 17 N -0.524 5.524 18 C 0.236 3.764 19 C -0.195 4.195 20 C -0.007 4.007 21 C -0.174 4.174 22 C 0.535 3.465 23 O -0.520 6.520 24 O -0.514 6.514 25 C -0.029 4.029 26 C 0.013 3.987 27 F -0.131 7.131 28 H 0.003 0.997 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.390 0.610 38 H 0.430 0.570 39 H 0.433 0.567 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.414 0.586 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 5.517 22.517 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.449 6.449 16 N -0.297 5.297 17 N -0.249 5.249 18 C 0.126 3.874 19 C -0.218 4.218 20 C -0.026 4.026 21 C -0.178 4.178 22 C 0.380 3.620 23 O -0.410 6.410 24 O -0.326 6.326 25 C -0.049 4.049 26 C -0.012 4.012 27 F -0.110 7.110 28 H 0.021 0.979 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.226 0.774 38 H 0.276 0.724 39 H 0.277 0.723 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.273 0.727 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.384 4.750 21.740 22.509 hybrid contribution -0.296 0.390 -0.607 0.780 sum -3.680 5.140 21.133 22.058 Atomic orbital electron populations 1.21844 0.97705 0.99304 1.00026 1.18385 0.92833 0.92809 0.90473 1.21843 0.98733 0.98266 1.00023 1.20936 1.31696 1.12188 0.89702 0.92304 1.24886 0.94821 0.94899 0.98921 1.69794 1.36506 1.22672 1.23365 0.86546 0.79321 0.79373 0.82485 1.20684 1.21246 1.19877 1.21757 0.98267 0.95637 0.82003 1.45629 1.55035 1.32774 1.04818 1.15868 0.80606 0.82609 0.80287 1.91013 1.42997 1.26763 1.84084 1.44774 1.52474 1.22729 1.09759 1.43334 1.51015 1.23199 1.07320 1.18001 0.91813 0.90043 0.87541 1.20327 1.07943 1.04138 0.89423 1.21201 0.91002 0.91330 0.99100 1.18426 1.08499 1.00869 0.90049 1.20584 0.76753 0.81399 0.83236 1.90911 1.36466 1.26224 1.87415 1.84544 1.72359 1.59116 1.16579 1.20915 0.96178 0.98587 0.89220 1.16607 1.06137 0.97297 0.81170 1.91540 1.91569 1.88238 1.39674 0.97853 0.89401 0.95257 0.95253 0.89403 0.97856 0.92909 0.92355 0.92361 0.77429 0.72401 0.72308 0.84395 0.83571 0.72697 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 4 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.04 9.35 55.43 0.52 -22.52 16 8 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.15 2.94 4.50 -4.04 -0.02 2.92 16 13 N -0.73 -12.09 4.92 -65.22 -0.32 -12.41 16 14 C 0.71 11.34 8.68 -86.92 -0.75 10.58 16 15 O -0.57 -11.24 17.18 5.29 0.09 -11.15 16 16 N -0.54 -6.28 6.21 27.63 0.17 -6.11 16 17 N -0.52 -5.50 6.42 32.45 0.21 -5.29 16 18 C 0.24 2.21 6.73 -83.76 -0.56 1.64 16 19 C -0.19 -1.44 9.45 -39.46 -0.37 -1.81 16 20 C -0.01 -0.05 9.60 -39.21 -0.38 -0.42 16 21 C -0.17 -1.47 5.88 -104.97 -0.62 -2.08 16 22 C 0.53 4.64 8.26 34.45 0.28 4.92 16 23 O -0.52 -6.08 17.12 -19.28 -0.33 -6.41 16 24 O -0.51 -2.86 12.67 -40.65 -0.51 -3.37 16 25 C -0.03 -0.27 9.56 -39.15 -0.37 -0.64 16 26 C 0.01 0.13 7.30 -39.32 -0.29 -0.16 16 27 F -0.13 -1.47 16.62 2.25 0.04 -1.43 16 28 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 33 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 34 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.39 5.89 4.08 -40.82 -0.17 5.73 16 38 H 0.43 4.04 6.67 -182.59 -1.22 2.82 16 39 H 0.43 4.69 6.16 -182.59 -1.13 3.57 16 40 H 0.14 0.78 6.17 -52.49 -0.32 0.45 16 41 H 0.15 0.69 7.60 -52.48 -0.40 0.30 16 42 H 0.41 0.57 9.11 45.56 0.42 0.98 16 43 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -30.74 363.06 -8.41 -39.15 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.79 Total: 9.25 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.92 Total: -0.48 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.58 Total: -46.33 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.75 Total: -20.93 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.74 -8.41 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.220 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds