Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47048 * 240.00479 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99715 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99898 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47271 * 90.00201 * 8 6 4 10 10 H 1.48505 * 109.46880 * 209.99681 * 8 6 4 11 11 H 1.48495 * 109.47179 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 13 13 N 1.46507 * 109.46773 * 299.99896 * 12 2 1 14 14 C 1.34774 * 119.99765 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99889 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.40105 * 119.99775 * 0.27790 * 16 14 13 18 18 C 1.39151 * 119.99621 * 179.72234 * 17 16 14 19 19 C 1.39162 * 119.93368 * 359.72648 * 18 17 16 20 20 C 1.37628 * 120.10058 * 179.72245 * 19 18 17 21 21 C 1.39830 * 119.96176 * 0.55415 * 20 19 18 22 22 C 1.47388 * 120.06495 * 179.74647 * 21 20 19 23 23 O 1.21519 * 119.99877 * 179.97438 * 22 21 20 24 24 O 1.34757 * 120.00272 * 359.97385 * 22 21 20 25 25 C 1.39865 * 119.86880 * 359.71908 * 21 20 19 26 26 C 1.37765 * 119.89409 * 0.02562 * 25 21 20 27 27 F 1.35102 * 119.98124 * 179.97438 * 26 25 21 28 28 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 33 33 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 34 34 H 0.97000 * 119.99706 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47266 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 12 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 13 12 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 16 14 13 39 39 H 0.97000 * 119.99844 * 359.72383 * 17 16 14 40 40 H 1.07998 * 119.94761 * 359.97408 * 19 18 17 41 41 H 1.08006 * 120.01862 * 180.25234 * 20 19 18 42 42 H 0.96699 * 117.00459 * 180.02562 * 24 22 21 43 43 H 1.07996 * 120.05530 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7580 -3.7124 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7700 17 7 0.6187 1.2803 4.6415 18 6 0.1506 1.9331 5.7777 19 6 0.4826 1.4527 7.0409 20 6 0.0262 2.0990 8.1670 21 6 -0.7818 3.2333 8.0420 22 6 -1.2764 3.9239 9.2465 23 8 -1.9782 4.9099 9.1365 24 8 -0.9505 3.4621 10.4698 25 6 -1.1193 3.7116 6.7718 26 6 -0.6550 3.0633 5.6483 27 9 -0.9804 3.5235 4.4205 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7080 1.1610 -3.4843 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 1.1027 0.5738 7.1376 41 1 0.2881 1.7274 9.1468 42 1 -1.2988 3.9480 11.2298 43 1 -1.7429 4.5876 6.6717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -116.566082 kcal Electronic energy + Delta-G solvation = -28841.094494 eV Core-core repulsion = 24415.669719 eV Total energy + Delta-G solvation = -4425.424775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.93435 -41.61863 -41.23585 -39.89333 -38.29215 -37.45097 -36.98885 -35.04367 -33.40271 -32.47137 -31.81817 -29.81780 -27.59150 -27.51860 -26.77764 -25.27388 -24.21280 -22.55374 -22.05032 -20.81022 -20.14209 -19.72669 -19.25076 -18.42633 -17.91692 -17.55176 -17.00805 -16.94322 -16.72144 -16.71280 -16.60804 -16.43797 -16.17709 -15.37015 -14.93330 -14.92309 -14.89155 -14.76445 -14.21020 -14.11548 -14.02265 -13.49198 -13.25538 -13.12441 -12.85532 -12.69472 -12.60117 -12.49945 -12.46475 -12.27580 -12.14984 -11.71567 -11.70008 -11.51274 -11.21609 -10.74202 -10.72684 -10.40536 -10.09022 -10.01382 -8.54094 -8.02533 -6.18033 -0.39201 0.09406 0.65241 1.43238 1.44852 1.46647 1.54200 1.93478 1.96429 2.08221 2.46955 2.58879 3.04264 3.21688 3.48872 3.60481 3.99815 4.08279 4.11580 4.32194 4.46563 4.50992 4.67425 4.78393 4.84930 4.96291 5.01353 5.01448 5.05140 5.15537 5.17375 5.18514 5.26690 5.49907 5.56587 5.63726 5.65145 5.67575 5.90009 6.13114 6.15826 6.20546 6.42242 6.86210 6.95789 7.03031 7.32539 7.49934 8.96410 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002198 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.418999 B =12735.550490 C =13709.899063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.163 3.837 13 N -0.724 5.724 14 C 0.710 3.290 15 O -0.612 6.612 16 N -0.519 5.519 17 N -0.529 5.529 18 C 0.228 3.772 19 C -0.187 4.187 20 C 0.007 3.993 21 C -0.178 4.178 22 C 0.541 3.459 23 O -0.557 6.557 24 O -0.502 6.502 25 C -0.035 4.035 26 C 0.002 3.998 27 F -0.143 7.143 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.399 0.601 38 H 0.444 0.556 39 H 0.431 0.569 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.434 0.566 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 5.406 24.769 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.039 3.961 13 N -0.380 5.380 14 C 0.409 3.591 15 O -0.489 6.489 16 N -0.276 5.276 17 N -0.255 5.255 18 C 0.120 3.880 19 C -0.210 4.210 20 C -0.012 4.012 21 C -0.182 4.182 22 C 0.387 3.613 23 O -0.450 6.450 24 O -0.316 6.316 25 C -0.055 4.055 26 C -0.023 4.023 27 F -0.122 7.122 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.236 0.764 38 H 0.292 0.708 39 H 0.274 0.726 40 H 0.178 0.822 41 H 0.192 0.808 42 H 0.296 0.704 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.337 4.674 24.085 24.760 hybrid contribution -0.356 0.477 -1.120 1.268 sum -3.693 5.150 22.965 23.824 Atomic orbital electron populations 1.21687 0.97228 0.98823 1.00220 1.18373 0.93159 0.93010 0.90425 1.21685 0.98149 0.97899 1.00214 1.21242 1.31666 1.12185 0.91279 0.93324 1.25461 0.95205 0.95587 1.01036 1.69908 1.37007 1.23308 1.23588 0.85756 0.78700 0.78418 0.79899 1.20585 1.21094 1.19924 1.21281 0.97321 0.94972 0.82558 1.45307 1.55386 1.32954 1.04352 1.15788 0.80332 0.82321 0.80665 1.90993 1.44606 1.28449 1.84832 1.44311 1.51613 1.22597 1.09048 1.43275 1.51561 1.22991 1.07720 1.18132 0.92084 0.89969 0.87857 1.20625 1.07360 1.04436 0.88620 1.21471 0.89475 0.90098 1.00178 1.18580 1.08572 1.01338 0.89719 1.20593 0.75924 0.80666 0.84075 1.90906 1.38191 1.27854 1.88016 1.84493 1.71840 1.58943 1.16308 1.20952 0.96335 0.98649 0.89593 1.16739 1.06823 0.97831 0.80882 1.91507 1.91787 1.88482 1.40444 0.94899 0.91874 0.96002 0.95990 0.91877 0.94906 0.93083 0.93634 0.93618 0.76407 0.70806 0.72582 0.82228 0.80790 0.70412 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 4 C -0.53 -26.86 8.01 25.60 0.21 -26.66 16 5 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 6 C 0.03 1.39 5.15 84.65 0.44 1.82 16 7 N -0.90 -47.21 9.35 21.45 0.20 -47.01 16 8 Si 0.95 41.89 29.54 68.60 2.03 43.91 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.16 6.52 4.50 86.38 0.39 6.91 16 13 N -0.72 -23.21 4.92 -478.52 -2.36 -25.57 16 14 C 0.71 21.76 8.68 179.06 1.55 23.31 16 15 O -0.61 -23.41 17.18 -3.99 -0.07 -23.48 16 16 N -0.52 -10.91 6.21 -184.75 -1.15 -12.06 16 17 N -0.53 -10.02 6.42 -51.24 -0.33 -10.35 16 18 C 0.23 3.76 6.73 38.48 0.26 4.02 16 19 C -0.19 -2.15 9.45 22.35 0.21 -1.94 16 20 C 0.01 0.07 9.60 22.51 0.22 0.28 16 21 C -0.18 -2.61 5.88 -20.09 -0.12 -2.73 16 22 C 0.54 8.31 8.26 70.23 0.58 8.89 16 23 O -0.56 -12.50 17.12 19.77 0.34 -12.16 16 24 O -0.50 -4.04 12.67 -56.67 -0.72 -4.76 16 25 C -0.04 -0.61 9.56 22.55 0.22 -0.40 16 26 C 0.00 0.04 7.30 22.44 0.16 0.20 16 27 F -0.14 -3.13 16.62 44.97 0.75 -2.38 16 28 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 33 H 0.03 1.17 6.86 -2.38 -0.02 1.16 16 34 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.40 11.36 4.08 -92.71 -0.38 10.98 16 38 H 0.44 7.03 6.67 -213.32 -1.42 5.61 16 39 H 0.43 8.60 6.16 -213.32 -1.31 7.29 16 40 H 0.16 1.13 6.17 -2.91 -0.02 1.11 16 41 H 0.17 0.83 7.60 -2.91 -0.02 0.80 16 42 H 0.43 -0.07 9.11 -74.06 -0.67 -0.75 16 43 H 0.15 2.63 7.64 -2.91 -0.02 2.61 16 Total: -1.00 -66.58 363.06 1.27 -65.31 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -2.67 Total: 21.89 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 5.25 Total: 6.65 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.63 Total: -94.98 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.45 Total: -40.40 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.75 Total: -2.38 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -66.58 1.27 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.256 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds