Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.47299 * 2 1 4 4 N 1.30181 * 126.79899 * 270.17081 * 3 2 1 5 5 O 1.20925 * 111.60163 * 180.24927 * 4 3 2 6 6 C 1.34045 * 111.56358 * 359.74298 * 5 4 3 7 7 C 1.35442 * 106.45209 * 0.02562 * 6 5 4 8 8 C 1.50698 * 128.01146 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46925 * 260.02453 * 8 7 6 10 10 C 1.46899 * 111.00031 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.91029 * 336.25226 * 10 9 8 12 12 C 1.53788 * 113.61350 * 107.50266 * 10 9 8 13 13 C 1.53781 * 87.08058 * 139.98066 * 12 10 9 14 14 H 1.08998 * 113.68851 * 89.12637 * 13 12 10 15 15 N 1.46497 * 113.61558 * 220.01543 * 13 12 10 16 16 C 1.34778 * 120.00309 * 252.50336 * 15 13 12 17 17 O 1.21276 * 119.99491 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99778 * 180.02562 * 16 15 13 19 19 S 1.81004 * 109.46742 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99907 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99832 * 180.27629 * 20 19 18 23 23 N 1.31634 * 120.00296 * 359.72198 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.72079 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47021 * 119.99666 * 24 22 20 27 27 H 1.48501 * 109.47039 * 240.00083 * 24 22 20 28 28 C 1.53776 * 113.61541 * 204.99702 * 10 9 8 29 29 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47130 * 300.00052 * 1 2 3 31 31 H 1.09007 * 109.47499 * 59.99798 * 1 2 3 32 32 H 1.08999 * 109.47130 * 239.99948 * 2 1 3 33 33 H 1.08998 * 109.47457 * 119.99875 * 2 1 3 34 34 H 1.08006 * 126.76958 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47405 * 140.02382 * 8 7 6 36 36 H 1.08994 * 109.47023 * 20.01569 * 8 7 6 37 37 H 1.00898 * 110.99922 * 303.94919 * 9 8 7 38 38 H 1.08997 * 113.61520 * 25.42901 * 12 10 9 39 39 H 1.08998 * 113.61016 * 254.53205 * 12 10 9 40 40 H 0.97005 * 119.99622 * 72.49536 * 15 13 12 41 41 H 1.09000 * 109.47396 * 59.99696 * 18 16 15 42 42 H 1.09001 * 109.47080 * 299.99119 * 18 16 15 43 43 H 0.96995 * 120.00136 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.61588 * 105.47327 * 28 10 9 45 45 H 1.09001 * 113.61707 * 334.56611 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2894 2.1571 -1.0424 5 8 2.6839 3.2553 -0.7254 6 6 2.7357 3.3947 0.6067 7 6 2.3152 2.2192 1.1320 8 6 2.1843 1.8466 2.5863 9 7 3.3475 1.0473 2.9936 10 6 3.2544 0.6655 4.4091 11 1 2.6215 1.3373 4.9890 12 6 2.9341 -0.8229 4.6259 13 6 3.9419 -0.7897 5.7870 14 1 3.4982 -0.5161 6.7443 15 7 4.7806 -1.9879 5.8706 16 6 4.5778 -2.8852 6.8556 17 8 3.7012 -2.7003 7.6731 18 6 5.4411 -4.1174 6.9418 19 16 4.9263 -5.1166 8.3606 20 6 6.0685 -6.4514 8.2254 21 1 6.7953 -6.4613 7.4265 22 6 6.0301 -7.4932 9.1417 23 7 5.1439 -7.4813 10.1151 24 14 7.2359 -8.9122 8.9937 25 1 8.1215 -8.6891 7.8228 26 1 8.0576 -8.9942 10.2279 27 1 6.4867 -10.1815 8.8124 28 6 4.6180 0.3863 5.0628 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0513 4.2711 1.1533 35 1 1.2744 1.2644 2.7318 36 1 2.1365 2.7525 3.1906 37 1 3.4512 0.2340 2.4056 38 1 3.2428 -1.4611 3.7979 39 1 1.9078 -1.0069 4.9435 40 1 5.4819 -2.1356 5.2168 41 1 6.4834 -3.8231 7.0642 42 1 5.3332 -4.7012 6.0277 43 1 5.1173 -8.2091 10.7557 44 1 4.9512 1.1785 5.7333 45 1 5.3871 0.0787 4.3543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661568519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = 10.512714 kcal Electronic energy + Delta-G solvation = -25623.483702 eV Core-core repulsion = 21769.782653 eV Total energy + Delta-G solvation = -3853.701049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.88382 -41.11279 -39.53655 -37.21277 -35.49985 -34.58864 -34.15176 -32.45969 -32.02700 -30.57165 -27.70102 -27.14450 -26.60406 -25.39214 -23.98227 -22.46719 -21.81908 -21.66509 -20.85602 -19.75488 -18.54459 -18.30069 -17.87770 -17.49541 -16.88349 -16.68380 -16.43686 -16.18182 -16.12420 -15.55183 -15.20183 -15.06788 -14.66758 -14.58306 -14.35223 -14.06317 -13.79360 -13.64477 -13.42122 -13.32642 -13.16405 -13.14046 -12.91296 -12.62956 -12.51870 -12.40628 -12.14113 -11.98937 -11.78282 -11.70573 -11.64332 -11.16074 -10.90842 -10.84268 -10.41537 -10.27085 -10.00487 -9.30328 -8.66538 -8.35112 -6.12918 0.61914 1.22139 1.28013 1.41191 1.47752 1.58795 1.61932 2.26317 2.33778 2.44168 2.99098 3.14801 3.31417 3.35590 3.57496 3.61103 3.71851 3.90987 3.95414 4.01880 4.07640 4.11033 4.29517 4.31607 4.32405 4.42619 4.51446 4.59537 4.67752 4.80780 4.82572 4.83462 4.87874 4.94026 5.04169 5.05909 5.12293 5.12868 5.16976 5.27271 5.42023 5.61525 6.06806 6.19869 6.37515 6.55618 7.06450 7.28176 7.36352 8.74325 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.001663 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.572962 B =16837.307192 C =17299.415767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.018 3.982 4 N -0.402 5.402 5 O 0.082 5.918 6 C -0.031 4.031 7 C -0.208 4.208 8 C 0.138 3.862 9 N -0.671 5.671 10 C 0.084 3.916 11 H 0.112 0.888 12 C -0.176 4.176 13 C 0.110 3.890 14 H 0.092 0.908 15 N -0.701 5.701 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.119 4.119 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.345 0.655 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 23.063 -21.261 31.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.142 4.142 4 N -0.109 5.109 5 O 0.020 5.980 6 C -0.113 4.113 7 C -0.212 4.212 8 C 0.010 3.990 9 N -0.301 5.301 10 C -0.027 4.027 11 H 0.130 0.870 12 C -0.216 4.216 13 C 0.005 3.995 14 H 0.110 0.890 15 N -0.354 5.354 16 C 0.320 3.680 17 O -0.446 6.446 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.157 4.157 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.269 0.731 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.491 23.691 -20.999 32.130 hybrid contribution 1.022 -2.025 -0.162 2.274 sum -4.469 21.666 -21.161 30.613 Atomic orbital electron populations 1.21690 0.93418 1.03081 1.01900 1.20013 0.96854 0.87613 1.04129 1.23898 1.01603 0.99812 0.88847 1.73858 1.17890 0.93700 1.25494 1.84792 1.62210 1.26483 1.24511 1.26554 1.00045 1.02145 0.82514 1.21325 1.08091 0.94453 0.97343 1.20182 0.92017 0.99075 0.87766 1.60483 1.40794 1.26201 1.02660 1.22724 0.97128 0.93584 0.89237 0.86965 1.24193 0.99699 0.98772 0.98941 1.22461 0.93201 0.85064 0.98780 0.88963 1.45744 1.37709 1.21806 1.30119 1.20078 0.83193 0.83987 0.80727 1.90679 1.34799 1.77076 1.42004 1.23392 1.03151 0.97544 1.04128 1.85564 1.48575 1.23228 1.35135 1.23243 1.20511 1.08117 1.17489 0.89934 1.26130 0.98089 1.01089 0.93897 1.70188 1.35654 1.33502 1.15423 0.84904 0.77558 0.76734 0.78744 1.18038 1.19917 1.19955 1.23389 0.97795 0.95977 0.98587 0.90431 0.92146 0.93479 0.90393 0.88692 0.73066 0.93287 0.87975 0.83593 0.88847 0.91881 0.74716 0.87297 0.87335 0.91995 0.89941 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.05 -0.58 6.44 29.85 0.19 -0.39 16 3 C 0.02 0.27 6.58 43.58 0.29 0.56 16 4 N -0.40 -7.84 12.07 -49.54 -0.60 -8.44 16 5 O 0.08 1.31 11.20 71.59 0.80 2.11 16 6 C -0.03 -0.29 12.26 67.17 0.82 0.53 16 7 C -0.21 -2.35 5.84 -19.74 -0.12 -2.47 16 8 C 0.14 1.15 6.02 85.56 0.51 1.66 16 9 N -0.67 -6.42 6.61 -492.86 -3.26 -9.68 16 10 C 0.08 0.90 4.18 45.44 0.19 1.09 16 11 H 0.11 1.04 7.87 -2.39 -0.02 1.02 16 12 C -0.18 -2.64 7.49 31.12 0.23 -2.41 16 13 C 0.11 2.17 4.24 45.52 0.19 2.36 16 14 H 0.09 2.30 7.46 -2.39 -0.02 2.28 16 15 N -0.70 -16.42 5.35 -440.05 -2.36 -18.78 16 16 C 0.53 19.12 7.85 87.66 0.69 19.81 16 17 O -0.57 -25.77 15.46 -3.02 -0.05 -25.82 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 24 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 C -0.12 -1.49 7.63 31.12 0.24 -1.25 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.88 7.76 -2.39 -0.02 0.86 16 34 H 0.25 0.10 8.06 -2.91 -0.02 0.08 16 35 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.10 0.57 8.13 -2.39 -0.02 0.55 16 37 H 0.34 3.44 7.80 -89.70 -0.70 2.74 16 38 H 0.09 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.42 6.96 8.73 -92.70 -0.81 6.15 16 41 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.10 1.11 8.12 -2.39 -0.02 1.10 16 Total: -1.00 -79.80 396.09 0.71 -79.09 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.49 Total: 16.42 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.51 Total: -15.25 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -5.92 Total: -92.45 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.75 Total: -23.71 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -79.80 0.71 -79.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661568519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.606 kcal (2) G-P(sol) polarization free energy of solvation -79.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds