Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46620 * 2 1 4 4 C 1.53002 * 109.47166 * 119.99768 * 2 1 3 5 5 C 1.50696 * 109.46600 * 65.00240 * 4 2 1 6 6 N 1.28653 * 124.72129 * 90.00331 * 5 4 2 7 7 C 1.33555 * 115.76567 * 179.97438 * 6 5 4 8 8 C 1.47265 * 123.13935 * 179.97438 * 7 6 5 9 9 O 1.21633 * 120.00190 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00005 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99814 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46941 * 180.02562 * 11 10 8 13 13 O 1.42905 * 113.28091 * 313.06421 * 12 11 10 14 14 C 1.53495 * 114.20669 * 180.02562 * 12 11 10 15 15 N 1.47066 * 87.98658 * 220.34216 * 14 12 11 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 12 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47441 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47001 * 120.00359 * 20 18 16 23 23 H 1.48499 * 109.47209 * 240.00202 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 12 25 25 C 1.35207 * 113.71964 * 0.24905 * 7 6 5 26 26 S 1.70768 * 124.72151 * 269.99672 * 5 4 2 27 27 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47118 * 299.99866 * 1 2 3 29 29 H 1.09000 * 109.47268 * 60.00128 * 1 2 3 30 30 H 1.08993 * 109.46986 * 240.00137 * 2 1 3 31 31 H 1.08999 * 109.46607 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47195 * 299.99916 * 3 2 1 33 33 H 1.08993 * 109.47329 * 60.00348 * 3 2 1 34 34 H 1.09001 * 109.47113 * 305.00516 * 4 2 1 35 35 H 1.08995 * 109.46869 * 184.99908 * 4 2 1 36 36 H 0.96992 * 119.99879 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47373 * 59.99924 * 11 10 8 38 38 H 1.08997 * 109.47135 * 299.99923 * 11 10 8 39 39 H 0.96696 * 113.99817 * 46.93921 * 13 12 11 40 40 H 1.09005 * 113.46950 * 105.56781 * 14 12 11 41 41 H 1.08998 * 113.47096 * 335.12425 * 14 12 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 43 43 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 44 44 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 45 45 H 1.08004 * 125.58554 * 179.75576 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 -2.1732 1.1888 6 7 2.3511 -3.1066 0.6594 7 6 1.8247 -4.3331 0.7053 8 6 2.4971 -5.5191 0.1486 9 8 1.9647 -6.6104 0.2214 10 7 3.7024 -5.3955 -0.4417 11 6 4.3716 -6.5755 -0.9951 12 6 5.7140 -6.1627 -1.6021 13 8 5.6247 -5.0064 -2.4369 14 6 6.5099 -7.3223 -2.2168 15 7 7.7250 -6.7235 -1.6443 16 6 9.0604 -6.7218 -1.9473 17 1 9.4198 -7.2684 -2.8066 18 6 9.9521 -6.0165 -1.1508 19 7 9.5140 -5.3499 -0.1038 20 14 11.7736 -6.0137 -1.5647 21 1 12.0061 -6.8325 -2.7815 22 1 12.2226 -4.6202 -1.8131 23 1 12.5403 -6.5857 -0.4288 24 6 6.8756 -6.1326 -0.5991 25 6 0.6141 -4.3833 1.3054 26 16 0.1848 -2.8088 1.8137 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 4.1268 -4.5253 -0.5002 37 1 3.7443 -7.0200 -1.7678 38 1 4.5406 -7.3030 -0.2012 39 1 5.1226 -4.2777 -2.0471 40 1 6.5000 -7.3260 -3.3068 41 1 6.2619 -8.2938 -1.7893 42 1 10.1371 -4.8574 0.4530 43 1 6.7249 -6.7872 0.2593 44 1 7.1765 -5.1247 -0.3136 45 1 0.0171 -5.2728 1.4427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672146639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -16.472708 kcal Electronic energy + Delta-G solvation = -26892.027033 eV Core-core repulsion = 23037.155808 eV Total energy + Delta-G solvation = -3854.871225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.71351 -40.79604 -39.67374 -37.26716 -36.65262 -35.32941 -34.09727 -32.19319 -30.47746 -28.73235 -28.21287 -27.99232 -26.60024 -25.75566 -23.79119 -22.73028 -21.38032 -21.03370 -20.55449 -19.96738 -18.89068 -18.17523 -17.29939 -17.05114 -16.74980 -16.73686 -16.09657 -15.96592 -15.79258 -15.70689 -15.42649 -15.00214 -14.80062 -14.47588 -14.41696 -14.15278 -13.92246 -13.50858 -13.48213 -13.04486 -13.03073 -12.98549 -12.86464 -12.68271 -12.54594 -12.21790 -12.06652 -11.82900 -11.80205 -11.56643 -11.50665 -11.25691 -10.98408 -10.82489 -10.72814 -10.58943 -10.30181 -9.79729 -8.97299 -7.93283 -5.26967 -0.52560 0.24547 0.57665 0.85696 1.43948 1.45901 1.56169 2.02258 2.23206 2.44572 2.89376 2.98923 3.28199 3.31306 3.54234 3.68310 3.84930 3.97210 4.01205 4.09287 4.19049 4.33184 4.37531 4.55207 4.63117 4.69110 4.73107 4.76245 4.82745 4.88705 4.89903 4.96796 5.05814 5.11502 5.11838 5.17093 5.27069 5.34198 5.44215 5.45954 5.49949 5.87921 6.17969 6.51483 6.72451 6.87086 6.99256 7.55762 8.54284 9.24329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002629 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.881365 B =10647.719202 C =11998.727181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.042 4.042 5 C 0.020 3.980 6 N -0.467 5.467 7 C -0.015 4.015 8 C 0.593 3.407 9 O -0.567 6.567 10 N -0.702 5.702 11 C 0.120 3.880 12 C 0.091 3.909 13 O -0.536 6.536 14 C 0.131 3.869 15 N -0.634 5.634 16 C -0.229 4.229 17 H 0.086 0.914 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.135 3.865 25 C -0.239 4.239 26 S 0.296 5.704 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.379 0.621 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.043 0.957 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.858 12.995 5.010 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.082 4.082 5 C -0.259 4.259 6 N -0.183 5.183 7 C -0.150 4.150 8 C 0.378 3.622 9 O -0.447 6.447 10 N -0.354 5.354 11 C -0.004 4.004 12 C 0.048 3.952 13 O -0.343 6.343 14 C 0.005 3.995 15 N -0.360 5.360 16 C -0.357 4.357 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.812 3.188 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.008 3.992 25 C -0.382 4.382 26 S 0.555 5.445 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.248 0.752 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.228 0.772 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -24.817 12.452 4.927 28.200 hybrid contribution 1.730 -0.453 -0.089 1.791 sum -23.087 12.000 4.838 26.465 Atomic orbital electron populations 1.22024 0.94194 1.01814 1.03339 1.21073 0.96729 0.96686 0.96503 1.21803 1.01100 0.94396 1.02860 1.20584 1.03288 0.83637 1.00726 1.27555 0.96415 1.01308 1.00627 1.66888 1.33713 0.98601 1.19126 1.20153 0.95364 0.92034 1.07450 1.17377 0.80686 0.86931 0.77230 1.90781 1.66313 1.27640 1.59971 1.45690 1.19282 1.12287 1.58177 1.21765 0.91917 0.88074 0.98691 1.22900 0.91358 0.88481 0.92499 1.86572 1.77799 1.25463 1.44427 1.22613 0.84238 0.94152 0.98512 1.45630 1.02109 1.58176 1.30037 1.19354 0.81348 1.25998 1.08951 0.89646 1.25685 1.02652 1.00157 0.97659 1.70023 1.34399 1.36988 1.18682 0.84931 0.79168 0.77196 0.77544 1.18892 1.21761 1.21711 1.22727 0.87388 0.97802 0.91258 1.26911 1.00303 1.06767 1.04262 1.82477 1.18399 0.93600 1.49987 0.93343 0.90549 0.91899 0.92426 0.92826 0.92092 0.91032 0.86768 0.89038 0.75189 0.89420 0.90144 0.77179 0.92626 0.90729 0.94276 0.95412 0.93888 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.89 71.98 0.64 -0.75 16 2 C -0.09 -1.03 2.91 -10.79 -0.03 -1.06 16 3 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 4 C -0.04 -0.50 5.27 29.85 0.16 -0.34 16 5 C 0.02 0.34 5.97 88.57 0.53 0.87 16 6 N -0.47 -11.12 10.12 -180.84 -1.83 -12.95 16 7 C -0.01 -0.38 6.70 40.56 0.27 -0.11 16 8 C 0.59 18.34 7.80 86.62 0.68 19.01 16 9 O -0.57 -20.21 16.71 -4.13 -0.07 -20.28 16 10 N -0.70 -21.02 5.34 -466.51 -2.49 -23.51 16 11 C 0.12 3.83 5.42 86.38 0.47 4.30 16 12 C 0.09 3.48 1.73 -10.46 -0.02 3.46 16 13 O -0.54 -20.77 13.56 -148.98 -2.02 -22.79 16 14 C 0.13 5.50 8.11 83.18 0.67 6.18 16 15 N -0.63 -34.16 3.78 -738.90 -2.79 -36.95 16 16 C -0.23 -13.40 10.75 84.03 0.90 -12.50 16 17 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 19 N -0.95 -59.03 11.51 21.65 0.25 -58.78 16 20 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 C 0.13 6.58 6.83 83.18 0.57 7.14 16 25 C -0.24 -4.74 10.62 67.12 0.71 -4.03 16 26 S 0.30 3.67 21.37 -56.49 -1.21 2.47 16 27 H 0.05 0.49 6.13 -2.39 -0.01 0.47 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.41 11.70 6.47 -92.71 -0.60 11.10 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.63 7.89 -2.39 -0.02 2.61 16 39 H 0.38 11.64 7.20 -74.06 -0.53 11.11 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.03 1.38 7.93 -2.38 -0.02 1.36 16 44 H 0.04 2.37 7.12 -2.39 -0.02 2.36 16 45 H 0.20 3.46 8.03 -2.91 -0.02 3.44 16 Total: -1.00 -77.26 385.37 -1.57 -78.83 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.11 Total: 26.97 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 6.68 Total: 17.92 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.87 Total: -132.19 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.09 Total: -43.08 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.21 Total: 2.47 kcal Total: -77.26 -1.57 -78.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672146639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds