Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09000 * 109.46662 * 55.00238 * 3 2 1 5 5 C 1.52996 * 109.47336 * 174.99994 * 3 2 1 6 6 N 1.46498 * 109.47059 * 175.00083 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46850 * 90.00589 * 15 13 11 17 17 H 1.48498 * 109.47329 * 210.00016 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.01003 * 15 13 11 19 19 N 1.46494 * 109.47171 * 295.00630 * 3 2 1 20 20 C 1.34779 * 120.00531 * 84.99693 * 19 3 2 21 21 O 1.21277 * 119.99526 * 0.02562 * 20 19 3 22 22 C 1.50699 * 120.00383 * 179.97438 * 20 19 3 23 23 C 1.50695 * 109.47352 * 180.02562 * 22 20 19 24 24 C 1.34857 * 125.88870 * 274.69213 * 23 22 20 25 25 C 1.40895 * 107.41422 * 179.88709 * 24 23 22 26 26 C 1.34850 * 107.41566 * 0.37405 * 25 24 23 27 27 N 1.36341 * 125.89049 * 95.00151 * 23 22 20 28 28 H 0.96996 * 125.64121 * 359.95206 * 27 23 22 29 29 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47199 * 299.99158 * 1 2 3 31 31 H 1.08995 * 109.47432 * 60.00127 * 1 2 3 32 32 H 1.08997 * 109.47199 * 240.00842 * 2 1 3 33 33 H 1.08995 * 109.47432 * 119.99873 * 2 1 3 34 34 H 1.09004 * 109.47066 * 55.00351 * 5 3 2 35 35 H 1.08994 * 109.46974 * 295.00498 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 40 40 H 0.97009 * 119.99912 * 264.99313 * 19 3 2 41 41 H 1.09001 * 109.46793 * 300.00372 * 22 20 19 42 42 H 1.09005 * 109.46880 * 59.99506 * 22 20 19 43 43 H 1.07995 * 126.29256 * 0.02562 * 24 23 22 44 44 H 1.07998 * 126.28834 * 180.13129 * 25 24 23 45 45 H 1.08000 * 125.88816 * 179.73444 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0629 2.8170 0.0060 7 6 5.3850 3.0639 0.0919 8 8 6.1629 2.1493 0.2633 9 6 5.8970 4.4764 -0.0250 10 16 7.7004 4.4794 0.1295 11 6 8.0192 6.2039 -0.0403 12 1 7.2004 6.8924 -0.1889 13 6 9.3225 6.6778 0.0180 14 7 10.3204 5.8387 0.1996 15 14 9.6606 8.5060 -0.1628 16 1 9.6305 9.1496 1.1752 17 1 10.9980 8.7037 -0.7770 18 1 8.6221 9.1181 -1.0299 19 7 1.6523 2.0976 -1.2517 20 6 0.4349 2.6644 -1.3668 21 8 -0.3394 2.6327 -0.4339 22 6 0.0364 3.3387 -2.6543 23 6 -1.3611 3.8870 -2.5225 24 6 -2.5026 3.2020 -2.7377 25 6 -3.5750 4.0850 -2.5022 26 6 -3.0478 5.2781 -2.1601 27 7 -1.6893 5.1628 -2.1709 28 1 -1.0604 5.8712 -1.9625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9954 0.8313 -0.6660 35 1 3.8498 1.0378 1.0959 36 1 3.4408 3.5485 -0.1308 37 1 5.6151 4.8859 -0.9950 38 1 5.4631 5.0869 0.7670 39 1 11.2311 6.1699 0.2400 40 1 2.2718 2.1233 -1.9977 41 1 0.7278 4.1542 -2.8664 42 1 0.0678 2.6147 -3.4685 43 1 -2.5805 2.1664 -3.0339 44 1 -4.6260 3.8505 -2.5846 45 1 -3.6055 6.1711 -1.9196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759301201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -64.944843 kcal Electronic energy + Delta-G solvation = -26215.641415 eV Core-core repulsion = 22358.668280 eV Total energy + Delta-G solvation = -3856.973134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04859 -41.06727 -40.30584 -37.56504 -34.97062 -34.57803 -33.76879 -32.31678 -31.75621 -31.42699 -29.07708 -27.66631 -27.27074 -24.35842 -22.63952 -21.72707 -21.47678 -21.39570 -20.94717 -19.86937 -18.56223 -18.14248 -17.76942 -17.45848 -16.95396 -16.87208 -16.53801 -16.34700 -15.76801 -15.23039 -14.89993 -14.79884 -14.56676 -14.53239 -14.43535 -14.28431 -14.10772 -13.90087 -13.47355 -13.36696 -13.16307 -13.09439 -12.96454 -12.88010 -12.64107 -12.48858 -12.42951 -12.14136 -11.77394 -11.72101 -11.14328 -10.98197 -10.84826 -10.26926 -10.16311 -10.02444 -9.69005 -8.89055 -8.65884 -8.34628 -6.12195 1.26920 1.32696 1.42274 1.47264 1.56987 1.60990 1.71028 2.04672 2.22098 2.28009 2.38531 2.59864 2.99662 3.32134 3.56182 3.78830 3.92126 4.03476 4.09870 4.15136 4.28232 4.29638 4.40726 4.48569 4.51364 4.55918 4.60046 4.68404 4.70923 4.82679 4.89383 4.94846 5.09669 5.18156 5.36939 5.38017 5.42115 5.45000 5.46790 5.54622 6.12306 6.19856 6.26489 6.44659 6.57725 6.83678 7.06994 7.21702 7.32549 8.74384 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002265 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.154496 B =12358.380723 C =14394.427870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.082 0.918 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.130 4.130 10 S -0.150 6.150 11 C -0.545 4.545 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.257 1.257 19 N -0.717 5.717 20 C 0.515 3.485 21 O -0.558 6.558 22 C -0.070 4.070 23 C 0.024 3.976 24 C -0.209 4.209 25 C -0.229 4.229 26 C -0.015 4.015 27 N -0.551 5.551 28 H 0.423 0.577 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.415 0.585 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.719 -4.757 -7.476 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.100 0.900 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.077 5.923 11 C -0.693 4.693 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.181 1.181 19 N -0.371 5.371 20 C 0.302 3.698 21 O -0.436 6.436 22 C -0.110 4.110 23 C -0.089 4.089 24 C -0.234 4.234 25 C -0.253 4.253 26 C -0.146 4.146 27 N -0.146 5.146 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.251 0.749 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -25.721 -6.225 -6.472 27.243 hybrid contribution -0.208 2.395 -0.291 2.421 sum -25.929 -3.830 -6.762 27.068 Atomic orbital electron populations 1.21688 0.95310 1.00702 1.01655 1.21866 0.96252 0.94723 1.03838 1.21093 0.91821 0.94841 0.87934 0.90034 1.21693 0.92487 0.83173 1.03426 1.45687 1.06003 1.10411 1.74467 1.20001 0.82696 0.89768 0.75342 1.90710 1.56990 1.47056 1.49257 1.23373 1.00995 0.97085 1.06713 1.85581 0.99486 1.11783 1.95401 1.23195 0.96129 0.92530 1.57468 0.89927 1.26115 0.94800 1.04360 0.93917 1.70177 1.00052 1.37089 1.47399 0.84971 0.77960 0.76334 0.78827 1.19509 1.20368 1.18094 1.45999 1.16723 1.57638 1.16745 1.20856 0.81122 0.77915 0.89918 1.90765 1.51750 1.59383 1.41694 1.20224 0.91994 1.02514 0.96255 1.19800 0.95504 0.85617 1.08017 1.20838 0.92280 0.99892 1.10373 1.21148 0.99441 0.94299 1.10441 1.22232 0.82910 1.01058 1.08437 1.41986 1.07603 1.10900 1.54142 0.73944 0.92699 0.94103 0.93360 0.90171 0.89999 0.90259 0.90601 0.75089 0.86923 0.87651 0.92021 0.74865 0.85663 0.84618 0.85149 0.84312 0.79594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.51 71.98 0.61 -1.70 16 2 C -0.13 -1.72 5.61 30.60 0.17 -1.55 16 3 C 0.15 2.12 2.41 44.99 0.11 2.23 16 4 H 0.08 1.47 7.58 -2.39 -0.02 1.45 16 5 C 0.12 2.07 5.23 86.38 0.45 2.53 16 6 N -0.71 -15.18 5.39 -463.07 -2.49 -17.67 16 7 C 0.54 17.94 7.85 87.66 0.69 18.63 16 8 O -0.56 -24.22 15.86 -3.04 -0.05 -24.27 16 9 C -0.13 -4.81 6.16 71.24 0.44 -4.38 16 10 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 11 C -0.55 -30.29 9.50 67.96 0.65 -29.64 16 12 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 13 C 0.01 0.72 5.49 84.86 0.47 1.18 16 14 N -0.91 -55.02 13.22 21.65 0.29 -54.73 16 15 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 19 N -0.72 -7.95 4.47 -442.55 -1.98 -9.93 16 20 C 0.51 7.53 6.39 87.66 0.56 8.09 16 21 O -0.56 -13.00 13.17 -3.02 -0.04 -13.04 16 22 C -0.07 -0.68 6.24 29.10 0.18 -0.50 16 23 C 0.02 0.39 5.66 41.08 0.23 0.62 16 24 C -0.21 -4.01 10.77 22.14 0.24 -3.77 16 25 C -0.23 -4.20 10.86 22.14 0.24 -3.96 16 26 C -0.01 -0.22 11.94 83.21 0.99 0.77 16 27 N -0.55 -7.79 6.07 -182.77 -1.11 -8.90 16 28 H 0.42 3.83 8.96 -92.71 -0.83 3.00 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.04 0.84 7.85 -2.39 -0.02 0.83 16 31 H 0.05 0.91 5.65 -2.39 -0.01 0.90 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 6.67 8.14 -92.71 -0.75 5.92 16 37 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 38 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.27 15.20 8.31 -92.72 -0.77 14.43 16 40 H 0.41 2.91 8.60 -92.70 -0.80 2.11 16 41 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -82.57 392.60 0.16 -82.41 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -1.35 Total: 22.11 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 6.03 Total: -11.44 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -5.30 Total: -91.23 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.09 Total: -37.31 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -82.57 0.16 -82.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759301201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.469 kcal (2) G-P(sol) polarization free energy of solvation -82.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds